Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p069938 Quercus lobata HOM05D003555 ORTHO05D004542 6.6e-165 583.9 293 100.0
QL02p062748 Quercus lobata HOM05D003555 ORTHO05D004542 1.3e-141 506.5 376 71.8
Prupe.3G312200 Prunus persica HOM05D003555 ORTHO05D004542 4.5e-137 491.5 376 69.9
Cfa007176 Carpinus fangiana HOM05D003555 ORTHO05D004542 7.7e-137 490.7 376 71.3
Thecc.04G045300 Theobroma cacao HOM05D003555 ORTHO05D004542 2.9e-136 488.8 375 70.9
RcHm_v2.0_Chr2g0176361 Rosa chinensis HOM05D003555 ORTHO05D004542 4.2e-135 485.0 376 69.7
Duzib264G0281 Durio zibethinus HOM05D003555 ORTHO05D004542 5.5e-135 484.6 375 70.1
Manes.04G091900 Manihot esculenta HOM05D003555 ORTHO05D004542 7.2e-135 484.2 376 69.1
COL.COLO4_10540 Corchorus olitorius HOM05D003555 ORTHO05D004542 9.4e-135 483.8 375 69.9
Gorai.012G082900 Gossypium raimondii HOM05D003555 ORTHO05D004542 2.1e-134 482.6 375 69.6
CiPaw.04G001900 Carya illinoinensis HOM05D003555 ORTHO05D004542 3.6e-134 481.9 375 69.1
Duzib187G1504 Durio zibethinus HOM05D003555 ORTHO05D004542 3.6e-134 481.9 375 69.9
Gohir.D11G067700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 1.0e-133 480.3 375 69.1
FvH4_6g54180 Fragaria vesca HOM05D003555 ORTHO05D004542 1.8e-133 479.6 375 69.1
FAN09G3428 Fragaria x ananassa HOM05D003555 ORTHO05D004542 3.9e-133 478.4 377 68.7
Gohir.A05G334700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 5.1e-133 478.0 377 69.2
Gohir.A11G063400 Gossypium hirsutum HOM05D003555 ORTHO05D004542 5.1e-133 478.0 375 68.3
MD09G1004500 Malus domestica HOM05D003555 ORTHO05D004542 6.7e-133 477.6 376 68.4
Ciclev10015638m.g Citrus clementina HOM05D003555 ORTHO05D004542 3.3e-132 475.3 376 68.9
MD17G1008500 Malus domestica HOM05D003555 ORTHO05D004542 3.3e-132 475.3 376 67.8
Gohir.D04G073600 Gossypium hirsutum HOM05D003555 ORTHO05D004542 4.3e-132 474.9 375 69.1
CsaV3_5G020170 Cucumis sativus L. HOM05D003555 ORTHO05D004542 5.7e-132 474.6 375 68.3
TWI34G1938 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 5.7e-132 474.6 376 68.1
TWI60G1549 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 5.7e-132 474.6 376 68.1
MELO3C025061.2 Cucumis melo HOM05D003555 ORTHO05D004542 1.3e-131 473.4 375 68.3
Lalb_Chr14g0363981 Lupinus albus HOM05D003555 ORTHO05D004542 1.3e-131 473.4 376 67.8
Glyma.16G146600 Glycine max HOM05D003555 ORTHO05D004542 2.8e-131 472.2 376 68.1
Glyma.02G065500 Glycine max HOM05D003555 ORTHO05D004542 8.2e-131 470.7 376 68.1
GSVIVG01033006001 Vitis vinifera HOM05D003555 ORTHO05D004542 8.2e-131 470.7 376 68.4
ClCG01G008140 Citrullus lanatus HOM05D003555 ORTHO05D004542 1.8e-130 469.5 375 68.0
THA.LOC104805306 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 1.8e-130 469.5 376 67.8
TAR374G1733 Trochodendron aralioides HOM05D003555 ORTHO05D004542 2.4e-130 469.2 376 68.1
Potri.017G061100 Populus trichocarpa HOM05D003555 ORTHO05D004542 3.1e-130 468.8 376 67.0
Haze_14935 Corylus avellana HOM05D003555 ORTHO05D004542 4.1e-130 468.4 437 61.8
Lalb_Chr24g0403201 Lupinus albus HOM05D003555 ORTHO05D004542 9.1e-130 467.2 376 66.5
VMungo0464G0001 Vigna mungo HOM05D003555 ORTHO05D004542 1.5e-129 466.5 377 67.6
Duzib147G0304 Durio zibethinus HOM05D003555 ORTHO05D004542 2.0e-129 466.1 375 67.5
GSVIVG01008626001 Vitis vinifera HOM05D003555 ORTHO05D004542 3.4e-129 465.3 376 66.8
Glyma.16G050200 Glycine max HOM05D003555 ORTHO05D004542 4.5e-129 464.9 375 66.1
Glyma.19G101000 Glycine max HOM05D003555 ORTHO05D004542 7.7e-129 464.2 376 66.8
Potri.001G322500 Populus trichocarpa HOM05D003555 ORTHO05D004542 1.0e-128 463.8 376 66.5
Atru.chr6.2636 Acer truncatum HOM05D003555 ORTHO05D004542 1.3e-128 463.4 376 66.0
THA.LOC104823995 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 1.7e-128 463.0 376 65.7
TAR629G2425 Trochodendron aralioides HOM05D003555 ORTHO05D004542 1.7e-128 463.0 376 67.6
THA.LOC104825653 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 2.2e-128 462.6 376 66.5
Phvul.004G070900 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 3.8e-128 461.8 377 67.1
CANSAT64G0789 Cannabis sativa HOM05D003555 ORTHO05D004542 6.5e-128 461.1 376 66.2
TPR.G17457 Trifolium pratense HOM05D003555 ORTHO05D004542 1.1e-127 460.3 378 65.3
Dinv23202 Davidia involucrata HOM05D003555 ORTHO05D004542 2.5e-127 459.1 376 66.8
Medtr7g083720 Medicago truncatula HOM05D003555 ORTHO05D004542 5.5e-127 458.0 386 65.3
Sed0000891 Sechium edule HOM05D003555 ORTHO05D004542 1.2e-126 456.8 375 65.9
TAR622G0101 Trochodendron aralioides HOM05D003555 ORTHO05D004542 1.2e-126 456.8 373 67.3
Dinv11219 Davidia involucrata HOM05D003555 ORTHO05D004542 1.6e-126 456.4 376 66.5
Sed0008328 Sechium edule HOM05D003555 ORTHO05D004542 1.6e-126 456.4 375 65.9
Hma1.2p1_1187F.1_g265140 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 2.7e-126 455.7 376 66.0
Sp1g11410 Schrenkiella parvula HOM05D003555 ORTHO05D004542 3.6e-126 455.3 377 64.5
A08p32590 Brassica napus HOM05D003555 ORTHO05D004542 4.7e-126 454.9 375 64.0
C08p15700 Brassica napus HOM05D003555 ORTHO05D004542 4.7e-126 454.9 375 64.0
Lj5A90G23 Lonicera japonica HOM05D003555 ORTHO05D004542 4.7e-126 454.9 375 65.6
Lj1g0000762 Lotus japonicus HOM05D003555 ORTHO05D004542 4.7e-126 454.9 376 64.9
Phvul.001G086700 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 4.7e-126 454.9 375 65.1
PGR083G2609 Punica granatum HOM05D003555 ORTHO05D004542 4.7e-126 454.9 378 65.3
BcaB03g13163 Brassica carinata HOM05D003555 ORTHO05D004542 6.1e-126 454.5 375 64.0
BolC8t49197H Brassica oleracea HOM05D003555 ORTHO05D004542 7.9e-126 454.1 375 64.0
BraA08t35183Z Brassica rapa HOM05D003555 ORTHO05D004542 7.9e-126 454.1 375 64.0
PSO478G0165 Papaver somniferum HOM05D003555 ORTHO05D004542 7.9e-126 454.1 376 65.2
BcaC05g25110 Brassica carinata HOM05D003555 ORTHO05D004542 1.4e-125 453.4 375 63.7
CARHR013160 Cardamine hirsuta HOM05D003555 ORTHO05D004542 1.4e-125 453.4 377 64.2
arahy.Tifrunner.gnm1.ann1.N4MBCZ Arachis hypogaea HOM05D003555 ORTHO05D004542 3.0e-125 452.2 401 62.8
arahy.Tifrunner.gnm1.ann1.HQ0MCX Arachis hypogaea HOM05D003555 ORTHO05D004542 6.7e-125 451.1 399 62.9
Eucgr.G01943 Eucalyptus grandis HOM05D003555 ORTHO05D004542 6.7e-125 451.1 378 65.3
FAN14G0379 Fragaria x ananassa HOM05D003555 ORTHO05D004542 6.7e-125 451.1 370 66.5
AL1G24480 Arabidopsis lyrata HOM05D003555 ORTHO05D004542 8.8e-125 450.7 377 63.9
A06p08830 Brassica napus HOM05D003555 ORTHO05D004542 2.0e-124 449.5 375 63.7
BraA06t24078Z Brassica rapa HOM05D003555 ORTHO05D004542 2.0e-124 449.5 375 63.7
Thhalv10007948m.g Eutrema salsugineum HOM05D003555 ORTHO05D004542 3.3e-124 448.7 375 64.0
Nn4g22182 Nelumbo nucifera HOM05D003555 ORTHO05D004542 3.3e-124 448.7 373 66.8
Cc05_g01690 Coffea canephora HOM05D003555 ORTHO05D004542 4.4e-124 448.4 378 65.3
FAN02G1454 Fragaria x ananassa HOM05D003555 ORTHO05D004542 4.4e-124 448.4 370 65.9
AT1G12840 Arabidopsis thaliana HOM05D003555 ORTHO05D004542 5.7e-124 448.0 375 64.5
HanXRQChr16g0528421 Helianthus annuus HOM05D003555 ORTHO05D004542 5.7e-124 448.0 376 64.1
A09p63580 Brassica napus HOM05D003555 ORTHO05D004542 1.3e-123 446.8 377 63.4
BolC8t50972H Brassica oleracea HOM05D003555 ORTHO05D004542 1.3e-123 446.8 377 63.4
BraA09t41708Z Brassica rapa HOM05D003555 ORTHO05D004542 1.3e-123 446.8 377 63.4
BcaC07g40270 Brassica carinata HOM05D003555 ORTHO05D004542 2.8e-123 445.7 377 63.1
BcaC07g41676 Brassica carinata HOM05D003555 ORTHO05D004542 2.8e-123 445.7 377 63.1
MBI11_g08158_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 2.8e-123 445.7 376 64.9
C05p10440 Brassica napus HOM05D003555 ORTHO05D004542 1.1e-122 443.7 377 63.4
C08p47080 Brassica napus HOM05D003555 ORTHO05D004542 1.1e-122 443.7 375 63.2
BolC5t29790H Brassica oleracea HOM05D003555 ORTHO05D004542 1.1e-122 443.7 377 63.4
C08p33730 Brassica napus HOM05D003555 ORTHO05D004542 1.4e-122 443.4 377 63.1
CSS0013918 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 1.4e-122 443.4 376 65.2
BcaB08g34247 Brassica carinata HOM05D003555 ORTHO05D004542 1.8e-122 443.0 377 62.9
CSS0044185 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 1.8e-122 443.0 376 64.9
vmacro19161 Vaccinium macrocarpon HOM05D003555 ORTHO05D004542 1.8e-122 443.0 376 64.6
ATR0582G027 Amborella trichopoda HOM05D003555 ORTHO05D004542 2.4e-122 442.6 376 64.1
FAN05G2121 Fragaria x ananassa HOM05D003555 ORTHO05D004542 2.4e-122 442.6 369 65.3
BcaC05g25150 Brassica carinata HOM05D003555 ORTHO05D004542 5.3e-122 441.4 377 63.1
Actinidia36835 Actinidia chinensis HOM05D003555 ORTHO05D004542 9.1e-122 440.7 376 64.4
Aa31LG1G1920 Aethionema arabicum HOM05D003555 ORTHO05D004542 1.2e-121 440.3 406 59.9
SalBow1G4818 Salvia bowleyana HOM05D003555 ORTHO05D004542 1.5e-121 439.9 378 63.5
Ah.07g207280 Amaranthus hybridus HOM05D003555 ORTHO05D004542 2.0e-121 439.5 376 62.8
DCAR_016355 Daucus carota HOM05D003555 ORTHO05D004542 2.0e-121 439.5 377 64.2
Hund11754 Selenicereus undatus HOM05D003555 ORTHO05D004542 2.6e-121 439.1 376 63.8
DCAR_021412 Daucus carota HOM05D003555 ORTHO05D004542 3.5e-121 438.7 378 63.5
Oeu058121.1 Olea europaea HOM05D003555 ORTHO05D004542 3.5e-121 438.7 379 63.3
Ah.13g068520 Amaranthus hybridus HOM05D003555 ORTHO05D004542 5.9e-121 438.0 376 62.5
Carub.0001s1258 Capsella rubella HOM05D003555 ORTHO05D004542 7.7e-121 437.6 375 62.7
EL10Ac3g05664 Beta vulgaris HOM05D003555 ORTHO05D004542 1.7e-120 436.4 376 62.2
Solyc03g097800.4 Solanum lycopersicum HOM05D003555 ORTHO05D004542 1.7e-120 436.4 378 62.4
AUR62015995 Chenopodium quinoa HOM05D003555 ORTHO05D004542 2.2e-120 436.0 376 62.8
Sopen03g028540 Solanum pennellii HOM05D003555 ORTHO05D004542 2.2e-120 436.0 378 62.4
CAN.G637.54 Capsicum annuum HOM05D003555 ORTHO05D004542 5.0e-120 434.9 378 62.4
ECA232G4336 Erigeron canadensis HOM05D003555 ORTHO05D004542 8.5e-120 434.1 378 62.7
Peaxi162Scf00171g01130 Petunia axillaris HOM05D003555 ORTHO05D004542 1.1e-119 433.7 378 62.7
MSTRG.22881 Avicennia marina HOM05D003555 ORTHO05D004542 1.4e-119 433.3 378 63.8
Migut.D01225 Erythranthe guttata HOM05D003555 ORTHO05D004542 1.4e-119 433.3 378 63.2
BolC8t52247H Brassica oleracea HOM05D003555 ORTHO05D004542 2.5e-119 432.6 375 61.9
CAN.G257.127 Capsicum annuum HOM05D003555 ORTHO05D004542 2.5e-119 432.6 379 62.3
Zm00001eb345260 Zea mays HOM05D003555 ORTHO05D004542 6.1e-118 427.9 379 61.2
Os05g0593100 Oryza sativa ssp. japonica HOM05D003555 ORTHO05D004542 1.0e-117 427.2 379 61.2
Lsat_1_v5_gn_4_84140 Lactuca sativa HOM05D003555 ORTHO05D004542 1.4e-117 426.8 376 60.9
VMungo1383G1114 Vigna mungo HOM05D003555 ORTHO05D004542 1.8e-117 426.4 361 64.0
MSTRG.11256 Avicennia marina HOM05D003555 ORTHO05D004542 3.9e-117 425.2 378 61.9
CDE05G2896 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 5.2e-117 424.9 375 60.8
MBI07_g40357_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 1.1e-116 423.7 374 63.6
unitig_61.g26203 Utricularia gibba HOM05D003555 ORTHO05D004542 2.6e-116 422.5 378 62.7
Hund04735 Selenicereus undatus HOM05D003555 ORTHO05D004542 3.3e-116 422.2 406 58.4
COL.COLO4_13344 Corchorus olitorius HOM05D003555 ORTHO05D004542 2.8e-115 419.1 375 63.2
Nn3g16313 Nelumbo nucifera HOM05D003555 ORTHO05D004542 2.4e-114 416.0 352 64.8
Psat0s1497g0040 Pisum sativum HOM05D003555 ORTHO05D004542 2.0e-113 412.9 338 66.3
Sabra16G0204700 Salix brachista HOM05D003555 ORTHO05D004542 4.5e-113 411.8 414 56.8
Manes.11G078200 Manihot esculenta HOM05D003555 ORTHO05D004542 1.3e-112 410.2 340 66.5
Ca_08125_v3 Cicer arietinum L. HOM05D003555 ORTHO05D004542 1.1e-111 407.1 371 60.9
Rhsim08G0195300 Rhododendron simsii HOM05D003555 ORTHO05D004542 1.1e-111 407.1 455 52.5
Sc13g0008590 Simmondsia chinensis HOM05D003555 ORTHO05D004542 1.9e-111 406.4 336 65.8
SGA_v2.0_scaffold14G07035 Striga asiatica HOM05D003555 ORTHO05D004542 3.6e-110 402.1 360 62.8
Zm00001eb163710 Zea mays HOM05D003555 ORTHO05D004542 3.0e-109 399.1 379 57.8
Nn5g27103 Nelumbo nucifera HOM05D003555 ORTHO05D004542 4.0e-109 398.7 334 64.4
Actinidia18318 Actinidia chinensis HOM05D003555 ORTHO05D004542 5.2e-109 398.3 330 66.1
Sc25g0000460 Simmondsia chinensis HOM05D003555 ORTHO05D004542 3.5e-105 385.6 339 63.1
ECA246G0182 Erigeron canadensis HOM05D003555 ORTHO05D004542 2.2e-104 382.9 244 79.1
Actinidia25536 Actinidia chinensis HOM05D003555 ORTHO05D004542 5.0e-104 381.7 316 65.8
SEGI_35214 Sequoiadendron giganteum HOM05D003555 ORTHO05D004542 7.2e-103 377.9 375 54.9
Lsat_1_v5_gn_4_84120 Lactuca sativa HOM05D003555 ORTHO05D004542 9.8e-100 367.5 244 75.0
Zm00001eb297260 Zea mays HOM05D003555 ORTHO05D004542 2.2e-99 366.3 319 62.1
CDE05G1333 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 7.0e-98 361.3 375 54.4
Lj9A484G61 Lonicera japonica HOM05D003555 ORTHO05D004542 9.1e-98 360.9 265 70.6
SMO200G0006 Selaginella moellendorffii HOM05D003555 ORTHO05D004542 6.6e-96 354.8 374 51.1
Mapoly0126s0013 Marchantia polymorpha HOM05D003555 ORTHO05D004542 9.5e-95 350.9 377 48.8
Sabra17G0054300 Salix brachista HOM05D003555 ORTHO05D004542 1.2e-92 344.0 384 54.2
Pp3c13_14220 Physcomitrium patens HOM05D003555 ORTHO05D004542 2.0e-92 343.2 374 50.3
Cpa.g.sc70.83 Carica papaya HOM05D003555 ORTHO05D004542 3.7e-91 339.0 288 64.6
Hma1.2p1_1187F.1_g265130 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 2.7e-89 332.8 290 63.4
Lsat_1_v5_gn_6_50360 Lactuca sativa HOM05D003555 ORTHO05D004542 9.8e-84 314.3 299 58.2
Oeu058117.1 Olea europaea HOM05D003555 ORTHO05D004542 3.5e-81 305.8 283 61.1
HPP92_022913 Vanilla planifolia HOM05D003555 ORTHO05D004542 4.6e-81 305.4 288 57.3
HanXRQChr09g0273581 Helianthus annuus HOM05D003555 ORTHO05D004542 1.5e-79 300.4 244 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2553 Anthoceros agrestis HOM05D003555 ORTHO05D004542 2.9e-75 286.2 360 45.0
CBR_g724 Chara braunii HOM05D003555 ORTHO05D004542 2.4e-74 283.1 255 55.3
Gorai.007G072500 Gossypium raimondii HOM05D003555 ORTHO05D004542 2.1e-73 280.0 251 62.2
Nitab4.5_0007858g0030 Nicotiana tabacum HOM05D003555 ORTHO05D004542 3.3e-71 272.7 377 45.9
Lsat_1_v5_gn_5_10760 Lactuca sativa HOM05D003555 ORTHO05D004542 1.6e-70 270.4 237 62.9
PRCOL_00003348 Prasinoderma coloniale HOM05D003555 ORTHO05D004542 1.2e-68 264.2 355 42.5
Pp3c9_8980 Physcomitrium patens HOM05D003555 ORTHO05D004542 1.2e-65 254.2 378 39.2
FAN09G3010 Fragaria x ananassa HOM05D003555 ORTHO05D004542 3.5e-65 252.7 183 73.2
CSS0036109 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 7.8e-65 251.5 271 56.5
MCO15G152 Micromonas commoda HOM05D003555 ORTHO05D004542 3.1e-61 239.6 388 37.6
Cre06.g250250 Chlamydomonas reinhardtii HOM05D003555 ORTHO05D004542 3.4e-60 236.1 369 38.5
AUR62021202 Chenopodium quinoa HOM05D003555 ORTHO05D004542 3.8e-59 232.6 369 42.8
Actinidia08900 Actinidia chinensis HOM05D003555 ORTHO05D004542 3.0e-56 223.0 376 41.5
THA.LOC104805959 Tarenaya hassleriana HOM05D003555 ORTHO05D022543 2.9e-51 206.5 132 80.3
Eucgr.G01949 Eucalyptus grandis HOM05D003555 ORTHO05D004542 2.3e-48 196.8 211 55.5
Nitab4.5_0005207g0040 Nicotiana tabacum HOM05D003555 ORTHO05D004542 1.8e-45 187.2 209 52.6
Haze_27306 Corylus avellana HOM05D003555 ORTHO05D163602 9.3e-34 148.3 296 31.4
Cfa026601 Carpinus fangiana HOM05D003555 ORTHO05D123537 2.5e-31 140.2 302 30.1
Eucgr.G01948 Eucalyptus grandis HOM05D003555 ORTHO05D022543 8.4e-27 125.2 69 85.5
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 2.7e-25 120.2 130 51.5
Nitab4.5_0005207g0030 Nicotiana tabacum HOM05D003555 ORTHO05D022543 6.7e-24 115.5 83 69.9
BcaB01g02330 Brassica carinata HOM05D003555 ORTHO05D002990 2.0e-20 104.0 113 56.6
MBI07_g36274_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D022543 3.6e-17 93.2 67 74.6
Hma1.2p1_0403F.1_g145240 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 1.0e-16 91.7 80 58.8
Glyma.01G064050 Glycine max HOM05D003555 ORTHO05D022543 3.3e-15 86.7 63 66.7
RcHm_v2.0_Chr5g0048981 Rosa chinensis HOM05D003555 ORTHO05D004542 9.1e-13 78.6 81 56.8
Duzib114G0355 Durio zibethinus HOM05D003555 ORTHO05D186121 1.0e-11 75.1 41 82.9
BcaC02g12651 Brassica carinata HOM05D003555 ORTHO05D095367 9.4e-10 68.6 108 43.5
Oeu042080.1 Olea europaea HOM05D003555 ORTHO05D022543 2.7e-09 67.0 42 78.6


User provided reference genes

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