Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 2.4e-227 792.0 433 100.0
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.2e-181 640.2 393 85.8
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 3.3e-176 622.1 391 83.4
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 5.4e-171 604.7 395 79.2
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 8.6e-169 597.4 394 77.7
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 9.5e-168 594.0 438 76.5
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.3e-164 583.6 404 75.7
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 2.9e-164 582.4 397 75.6
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.4e-163 580.1 439 75.6
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 2.4e-163 579.3 391 76.5
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 2.4e-163 579.3 401 74.8
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 2.7e-162 575.9 391 76.5
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 6.0e-162 574.7 401 75.1
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 8.6e-161 570.9 393 75.8
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.5e-160 570.1 437 74.8
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 2.5e-160 569.3 439 74.0
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 3.3e-160 568.9 398 75.1
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.3e-160 568.9 398 75.1
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 4.3e-160 568.5 440 71.6
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 4.3e-160 568.5 401 74.6
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.6e-159 566.6 398 74.9
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.1e-158 563.9 398 74.4
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.1e-158 563.9 398 74.6
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 4.4e-157 558.5 395 73.2
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 4.4e-157 558.5 392 74.7
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 9.8e-157 557.4 392 75.0
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.3e-156 557.0 395 73.2
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 1.3e-156 557.0 388 71.1
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 3.7e-156 555.4 407 72.0
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 6.4e-156 554.7 401 71.3
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 6.4e-156 554.7 392 76.3
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 1.9e-155 553.1 395 73.9
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.2e-154 550.4 388 70.4
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 3.5e-154 548.9 391 73.4
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 7.8e-154 547.7 389 69.9
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 7.8e-154 547.7 394 74.4
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.7e-153 546.6 392 73.7
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 3.0e-153 545.8 393 70.5
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 3.0e-153 545.8 402 70.4
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 3.9e-153 545.4 396 74.2
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.9e-152 543.1 390 72.8
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.3e-152 542.0 389 69.9
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 4.3e-152 542.0 389 69.9
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 5.6e-152 541.6 389 71.7
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 7.3e-152 541.2 399 73.4
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.1e-151 537.7 438 72.4
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 8.1e-151 537.7 390 71.5
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.1e-150 535.8 438 71.0
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 3.1e-150 535.8 404 71.5
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 8.9e-150 534.3 393 71.0
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.9e-150 534.3 438 71.7
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.6e-149 532.7 395 71.6
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 2.6e-149 532.7 393 71.2
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 3.4e-149 532.3 404 71.5
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 3.7e-148 528.9 399 70.2
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 5.4e-147 525.0 399 69.4
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 9.2e-147 524.2 388 66.2
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.7e-146 522.7 401 65.8
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.0e-145 520.8 396 70.7
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 2.3e-145 519.6 391 70.1
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 3.0e-145 519.2 405 66.4
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 5.1e-145 518.5 395 72.2
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 6.6e-145 518.1 397 71.8
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 5.6e-144 515.0 393 72.0
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 7.3e-144 514.6 393 67.9
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 2.8e-143 512.7 395 67.1
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 6.2e-143 511.5 400 68.2
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 8.1e-143 511.1 395 68.9
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.4e-142 510.4 391 69.1
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.4e-142 510.4 393 66.9
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 2.4e-142 509.6 397 67.8
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 5.2e-142 508.4 389 69.4
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 5.2e-142 508.4 397 68.5
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.2e-141 507.3 398 67.8
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.5e-141 506.9 385 70.1
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 9.9e-141 504.2 360 72.2
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.7e-140 503.4 390 69.7
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 2.9e-140 502.7 411 65.2
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.4e-139 499.6 389 68.4
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 3.2e-139 499.2 392 68.6
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 5.4e-139 498.4 415 64.8
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 2.1e-138 496.5 389 67.6
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 2.7e-138 496.1 388 67.0
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 3.5e-138 495.7 395 68.9
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 4.6e-138 495.4 390 67.9
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 6.0e-138 495.0 389 67.4
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 6.0e-138 495.0 389 67.4
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 7.8e-138 494.6 389 67.1
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.7e-137 493.4 389 68.9
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.9e-136 490.0 385 67.0
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 5.6e-136 488.4 396 68.7
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 9.6e-136 487.6 393 67.2
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 2.8e-135 486.1 396 68.4
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 6.2e-135 485.0 398 66.8
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 8.1e-135 484.6 397 65.5
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.1e-134 484.2 394 66.8
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.4e-134 483.0 396 66.7
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.9e-131 473.4 397 63.0
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 3.2e-131 472.6 414 63.3
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 9.3e-131 471.1 395 65.1
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 7.8e-130 468.0 393 65.4
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.5e-128 463.8 395 63.5
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 3.1e-126 456.1 399 66.4
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 3.1e-126 456.1 399 64.9
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 4.0e-126 455.7 399 64.9
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 3.4e-125 452.6 395 64.8
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 9.9e-125 451.1 396 62.1
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.3e-124 450.7 395 64.6
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.1e-123 447.6 387 61.0
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.2e-123 445.7 406 59.1
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 7.1e-123 444.9 386 60.9
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.2e-122 444.1 406 58.9
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.3e-121 439.9 405 58.5
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 6.5e-116 421.8 414 56.0
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 8.4e-116 421.4 398 58.0
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.4e-115 420.6 322 68.0
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 5.1e-113 412.1 402 57.2
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 1.4e-107 394.0 310 67.7
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.7e-106 389.8 392 52.8
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.3e-105 387.5 384 55.5
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 2.8e-103 379.8 385 53.8
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 8.5e-92 341.7 427 49.9
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.7e-90 335.9 371 52.3
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.5e-85 320.9 239 70.3
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.6e-69 267.7 291 47.8
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.1e-67 261.5 223 61.4
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 2.7e-66 256.9 241 60.2
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.4e-65 254.6 396 39.1
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 6.6e-60 235.7 265 49.4
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.1e-59 235.0 168 70.2
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.5e-59 233.8 203 62.1
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 8.9e-57 225.3 157 79.6
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.0e-53 214.2 154 75.3
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 3.5e-53 213.4 153 73.2
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.6e-45 188.0 147 63.3
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 4.3e-43 179.9 422 32.9
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.3e-39 168.3 311 34.7
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.5e-16 91.7 112 47.3
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.4e-14 85.1 75 54.7
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 6.0e-13 79.7 72 59.7
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 1.5e-08 65.1 161 31.7
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 6.4e-07 59.7 36 66.7


User provided reference genes

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