Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p069683 Quercus lobata HOM05D003827 ORTHO05D004518 5.7e-68 260.8 130 100.0
QL02p063392 Quercus lobata HOM05D000573 ORTHO05D000425 1.4e-37 159.8 102 80.4
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 4.4e-36 154.8 111 74.8
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 1.1e-23 113.6 133 54.9
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 1.9e-23 112.8 133 54.1
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 3.6e-22 108.6 117 56.4
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 3.1e-21 105.5 89 65.2
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 4.0e-21 105.1 100 64.0
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 1.5e-20 103.2 110 54.5
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 2.6e-20 102.4 100 58.0
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 3.4e-20 102.1 131 51.9
Nn3g19462 Nelumbo nucifera HOM05D003827 ORTHO05D004518 3.4e-20 102.1 128 50.0
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 7.6e-20 100.9 100 58.0
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 9.9e-20 100.5 91 62.6
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 9.9e-20 100.5 91 62.6
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.3e-19 100.1 100 57.0
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 2.2e-19 99.4 98 61.2
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 2.2e-19 99.4 128 50.0
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 3.8e-19 98.6 91 61.5
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 3.8e-19 98.6 91 61.5
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 3.8e-19 98.6 91 61.5
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 6.4e-19 97.8 90 62.2
TAR633G1445 Trochodendron aralioides HOM05D003827 ORTHO05D004518 8.4e-19 97.4 91 61.5
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 2.4e-18 95.9 123 44.7
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.4e-18 95.9 90 63.3
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 3.2e-18 95.5 130 47.7
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 9.2e-18 94.0 100 52.0
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 1.2e-17 93.6 96 58.3
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 2.1e-17 92.8 115 49.6
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 2.1e-17 92.8 115 49.6
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 3.5e-17 92.0 128 50.8
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 3.5e-17 92.0 100 54.0
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 3.5e-17 92.0 129 45.0
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 4.6e-17 91.7 110 52.7
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 6.0e-17 91.3 126 47.6
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 6.0e-17 91.3 102 55.9
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 6.0e-17 91.3 131 48.9
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 6.0e-17 91.3 129 46.5
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 7.8e-17 90.9 123 49.6
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 7.8e-17 90.9 129 44.2
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 1.0e-16 90.5 90 60.0
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 1.3e-16 90.1 90 60.0
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 1.7e-16 89.7 108 53.7
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.7e-16 89.7 120 45.8
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 1.7e-16 89.7 125 46.4
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 3.0e-16 89.0 131 47.3
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.9e-16 88.6 129 45.0
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 5.1e-16 88.2 91 57.1
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 6.6e-16 87.8 116 47.4
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 8.7e-16 87.4 100 53.0
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 8.7e-16 87.4 115 47.0
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.1e-15 87.0 101 50.5
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.3e-14 83.6 102 51.0
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 2.8e-14 82.4 101 52.5
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 2.8e-14 82.4 122 44.3
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 3.6e-14 82.0 125 47.2
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 6.2e-14 81.3 127 46.5
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 6.2e-14 81.3 84 56.0
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 8.1e-14 80.9 102 53.9
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 8.1e-14 80.9 128 45.3
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.1e-14 80.9 86 53.5
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 1.4e-13 80.1 134 43.3
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 2.4e-13 79.3 86 55.8
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 2.4e-13 79.3 101 51.5
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 2.4e-13 79.3 128 46.9
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.1e-13 79.0 86 52.3
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 4.0e-13 78.6 117 52.1
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 4.0e-13 78.6 117 52.1
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 6.9e-13 77.8 115 47.0
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.2e-12 77.0 123 46.3
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.0e-12 76.3 132 40.2
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.6e-12 75.9 83 53.0
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 2.6e-12 75.9 130 44.6
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 7.6e-12 74.3 120 49.2
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 7.6e-12 74.3 65 60.0
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 9.9e-12 73.9 114 43.9
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 9.9e-12 73.9 131 43.5
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 9.9e-12 73.9 120 43.3
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 9.9e-12 73.9 116 45.7
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 1.3e-11 73.6 90 52.2
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 1.3e-11 73.6 83 53.0
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.2e-11 72.8 117 42.7
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 4.9e-11 71.6 125 39.2
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 4.9e-11 71.6 97 46.4
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 4.9e-11 71.6 84 56.0
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 8.4e-11 70.9 122 43.4
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 8.4e-11 70.9 129 40.3
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 1.1e-10 70.5 131 41.2
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 1.1e-10 70.5 122 38.5
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 1.9e-10 69.7 64 60.9
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 1.9e-10 69.7 94 52.1
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 3.2e-10 68.9 126 45.2
Oeu011513.1 Olea europaea HOM05D003827 ORTHO05D004518 4.2e-10 68.6 88 50.0
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 5.4e-10 68.2 88 54.5
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 7.1e-10 67.8 99 47.5
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 7.1e-10 67.8 87 49.4
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 9.3e-10 67.4 129 38.8
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 2.7e-09 65.9 106 40.6
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 2.7e-09 65.9 62 58.1
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 3.5e-09 65.5 95 51.6
HanXRQChr10g0282171 Helianthus annuus HOM05D003827 ORTHO05D004518 6.0e-09 64.7 62 59.7
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 6.0e-09 64.7 99 42.4
HanXRQChr15g0466901 Helianthus annuus HOM05D003827 ORTHO05D004518 1.0e-08 63.9 74 48.6
AUR62041345 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.7e-08 63.2 111 39.6
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 3.0e-08 62.4 91 48.4
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 3.9e-08 62.0 127 37.8
SGA_v2.0_scaffold214G42261 Striga asiatica HOM05D003827 ORTHO05D004518 3.9e-08 62.0 76 48.7
TPR.G39068 Trifolium pratense HOM05D003827 ORTHO05D000002 3.9e-08 62.0 91 48.4
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 5.1e-08 61.6 79 49.4
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 6.6e-08 61.2 124 37.9
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 6.6e-08 61.2 89 48.3
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 8.7e-08 60.8 84 44.0
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 1.9e-07 59.7 115 35.7
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.9e-07 59.7 95 40.0
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 2.5e-07 59.3 88 45.5
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 5.6e-07 58.2 111 40.5
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 5.6e-07 58.2 80 50.0
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 7.3e-07 57.8 98 46.9
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 7.3e-07 57.8 117 39.3
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 2.8e-06 55.8 84 42.9
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 6.2e-06 54.7 110 39.1
HPP92_024347 Vanilla planifolia HOM05D003827 ORTHO05D004518 6.2e-06 54.7 100 39.0
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 8.1e-06 54.3 29 89.7
HPP92_020343 Vanilla planifolia HOM05D003827 ORTHO05D004518 8.1e-06 54.3 97 42.3


User provided reference genes

Program Settings