Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 1.5e-50 202.6 104 100.0
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.8e-40 169.1 103 84.5
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 9.0e-32 140.2 103 69.9
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 2.2e-30 135.6 103 68.0
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.4e-29 132.9 103 68.0
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.9e-26 122.5 103 62.1
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 2.4e-24 115.5 103 56.3
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 3.2e-21 105.1 99 57.6
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 4.2e-21 104.8 101 51.5
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 7.2e-21 104.0 102 55.9
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 7.2e-21 104.0 103 49.5
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 2.1e-20 102.4 99 55.6
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 4.6e-20 101.3 103 52.4
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 7.9e-20 100.5 96 54.2
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 1.3e-19 99.8 103 51.5
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.3e-19 99.8 103 47.6
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.3e-19 99.8 103 50.5
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 3.9e-19 98.2 99 54.5
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 5.1e-19 97.8 99 53.5
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 5.1e-19 97.8 101 50.5
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 6.7e-19 97.4 103 54.4
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 6.7e-19 97.4 96 54.2
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 8.7e-19 97.1 103 54.4
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.5e-18 96.3 95 53.7
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 1.5e-18 96.3 102 49.0
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 1.9e-18 95.9 103 51.5
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.9e-18 95.9 96 54.2
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 2.5e-18 95.5 95 52.6
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 2.5e-18 95.5 99 52.5
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 4.3e-18 94.7 95 50.5
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 9.7e-18 93.6 102 46.1
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.3e-17 93.2 99 51.5
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 1.3e-17 93.2 95 51.6
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.6e-17 92.8 103 49.5
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 2.2e-17 92.4 99 50.5
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 6.3e-17 90.9 102 48.0
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 1.8e-16 89.4 95 50.5
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 1.8e-16 89.4 101 49.5
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.4e-16 89.0 100 50.0
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.4e-16 89.0 100 50.0
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 3.1e-16 88.6 99 52.5
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 4.1e-16 88.2 100 50.0
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 4.1e-16 88.2 100 50.0
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 4.1e-16 88.2 95 48.4
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 5.3e-16 87.8 95 48.4
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 1.5e-15 86.3 96 47.9
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 2.0e-15 85.9 95 48.4
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 2.6e-15 85.5 102 49.0
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.6e-15 85.5 96 55.2
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 2.6e-15 85.5 95 47.4
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 3.4e-15 85.1 102 49.0
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 4.5e-15 84.7 95 48.4
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 5.9e-15 84.3 102 49.0
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 7.7e-15 84.0 96 49.0
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 1.7e-14 82.8 95 48.4
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 3.8e-14 81.6 95 47.4
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 3.8e-14 81.6 100 43.0
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 5.0e-14 81.3 94 52.1
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.1e-13 80.1 96 50.0
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.4e-13 79.7 98 44.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 1.9e-13 79.3 95 46.3
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.9e-13 79.3 95 48.4
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 2.5e-13 79.0 95 49.5
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 5.5e-13 77.8 95 45.3
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 5.5e-13 77.8 95 45.3
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 9.4e-13 77.0 103 38.8
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 1.2e-12 76.6 90 50.0
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 1.2e-12 76.6 96 49.0
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 1.2e-12 76.6 96 44.8
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 1.2e-12 76.6 96 47.9
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 3.6e-12 75.1 95 41.1
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 6.1e-12 74.3 96 47.9
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 1.0e-11 73.6 96 46.9
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 1.8e-11 72.8 95 43.2
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 5.1e-11 71.2 108 41.7
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 5.1e-11 71.2 98 41.8
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 6.7e-11 70.9 95 43.2
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 6.7e-11 70.9 98 41.8
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 6.7e-11 70.9 104 44.2
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 2.0e-10 69.3 103 40.8
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 3.3e-10 68.6 55 54.5
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 3.3e-10 68.6 103 37.9
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.7e-09 66.2 92 39.1
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 2.8e-09 65.5 95 41.1
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 3.7e-09 65.1 102 36.3
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.7e-09 65.1 95 44.2
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 3.7e-09 65.1 98 41.8
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 4.8e-09 64.7 98 41.8
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 6.3e-09 64.3 95 44.2
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 6.3e-09 64.3 92 39.1
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 8.2e-09 63.9 92 38.0
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 8.2e-09 63.9 92 42.4
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 2.4e-08 62.4 92 39.1
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 3.1e-08 62.0 96 35.4
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 3.1e-08 62.0 92 42.4
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 9.1e-08 60.5 92 37.0
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 9.1e-08 60.5 48 64.6
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 1.2e-07 60.1 92 41.3
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 1.5e-07 59.7 102 37.3
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 2.0e-07 59.3 96 38.5
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 2.0e-07 59.3 92 37.0
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 3.4e-07 58.5 76 39.5
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 3.4e-07 58.5 101 35.6
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 3.4e-07 58.5 92 40.2
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 3.4e-07 58.5 95 41.1
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 4.5e-07 58.2 95 37.9
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 5.9e-07 57.8 96 36.5
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 5.9e-07 57.8 94 39.4
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 5.9e-07 57.8 95 40.0
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 7.7e-07 57.4 102 33.3
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 1.7e-06 56.2 102 36.3
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 1.7e-06 56.2 103 36.9
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 1.7e-06 56.2 94 38.3
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 3.8e-06 55.1 100 38.0
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 3.8e-06 55.1 97 36.1
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 3.8e-06 55.1 96 34.4
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 6.5e-06 54.3 96 32.3
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 8.5e-06 53.9 96 31.2


User provided reference genes

Program Settings