Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 2.9e-233 811.6 440 100.0
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 3.6e-138 495.7 449 64.6
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 4.4e-136 488.8 449 66.6
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 3.5e-125 452.6 441 59.9
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 4.9e-111 405.6 454 53.7
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.3e-108 397.5 453 58.3
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 4.6e-101 372.5 445 51.5
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 5.0e-100 369.0 462 50.9
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 1.1e-99 367.9 451 52.8
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 3.6e-98 362.8 454 51.5
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 4.7e-98 362.5 444 49.5
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 3.1e-97 359.8 461 49.2
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 6.8e-97 358.6 450 50.0
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 8.9e-97 358.2 462 52.2
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.2e-96 357.8 446 50.0
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 2.6e-96 356.7 447 51.9
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 3.7e-95 352.8 447 50.1
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 3.7e-95 352.8 447 51.0
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 1.9e-94 350.5 450 48.2
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 9.2e-94 348.2 446 49.1
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 5.1e-92 342.4 455 48.6
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 1.9e-91 340.5 445 51.9
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.6e-90 337.4 445 45.8
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.4e-89 334.3 449 51.7
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 2.3e-89 333.6 447 47.4
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.2e-88 331.3 449 51.9
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 2.0e-88 330.5 455 47.0
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 5.8e-88 328.9 452 48.9
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.3e-87 327.8 449 50.8
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.7e-87 327.4 455 45.5
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 6.4e-87 325.5 458 49.1
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 8.3e-87 325.1 464 49.4
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 6.0e-85 318.9 463 48.8
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 5.6e-83 312.4 447 45.4
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 8.1e-82 308.5 457 45.7
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 8.9e-81 305.1 449 47.7
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 1.3e-79 301.2 447 44.7
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 3.2e-78 296.6 459 44.2
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.6e-77 292.7 447 43.8
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 6.0e-77 292.4 446 43.5
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 5.1e-76 289.3 385 51.9
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 5.1e-76 289.3 440 45.5
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 6.6e-76 288.9 447 45.0
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 8.7e-76 288.5 447 44.3
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.1e-75 288.1 446 44.8
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.6e-74 284.3 449 42.5
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 1.1e-73 281.6 454 43.8
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 1.4e-73 281.2 449 45.4
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 6.9e-73 278.9 453 44.8
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 9.0e-73 278.5 454 48.0
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 5.8e-72 275.8 460 45.2
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 8.4e-71 271.9 458 43.9
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 1.2e-69 268.1 443 42.7
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 1.7e-68 264.2 489 40.3
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 8.7e-68 261.9 452 43.4
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 5.6e-67 259.2 462 42.4
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 7.3e-67 258.8 453 43.3
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 9.6e-67 258.5 449 42.1
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 5.3e-65 252.7 454 41.4
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 6.9e-65 252.3 461 39.0
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 2.0e-64 250.8 434 40.8
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 2.0e-64 250.8 444 39.6
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 2.6e-64 250.4 461 40.6
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 9.9e-64 248.4 449 41.6
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 1.7e-63 247.7 462 40.3
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 2.2e-63 247.3 451 42.1
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 4.9e-63 246.1 453 43.0
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 6.4e-63 245.7 487 37.8
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 6.4e-63 245.7 449 41.6
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 6.4e-63 245.7 441 40.8
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 2.4e-62 243.8 446 41.7
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 7.1e-62 242.3 449 38.8
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.2e-61 241.5 448 38.4
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 2.1e-61 240.7 448 41.1
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.1e-61 240.7 444 42.1
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 6.0e-61 239.2 448 40.8
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 1.0e-60 238.4 454 39.2
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 1.3e-60 238.0 496 36.5
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.8e-60 237.7 364 43.7
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 3.0e-60 236.9 463 40.6
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.9e-59 234.2 458 40.0
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 7.4e-59 232.3 502 38.4
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 3.7e-58 229.9 454 40.5
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.7e-58 229.9 388 39.2
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 8.1e-58 228.8 365 42.5
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 8.1e-58 228.8 444 41.9
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 8.1e-58 228.8 464 39.0
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 3.1e-57 226.9 454 39.6
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 4.0e-57 226.5 446 39.2
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 4.0e-57 226.5 466 39.1
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 5.3e-57 226.1 464 37.9
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 1.5e-56 224.6 448 40.2
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 1.5e-56 224.6 443 37.0
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 2.6e-56 223.8 465 35.3
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 5.8e-56 222.6 482 38.0
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 1.0e-55 221.9 445 40.4
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.3e-55 221.5 451 38.6
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.3e-55 221.5 451 39.9
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 6.5e-55 219.2 448 36.6
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.4e-54 218.0 444 39.4
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 5.5e-54 216.1 447 37.6
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 3.5e-53 213.4 457 35.9
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 3.0e-52 210.3 445 36.9
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 4.3e-51 206.5 444 40.3
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 3.1e-49 200.3 453 35.1
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 5.3e-49 199.5 562 33.6
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 5.3e-49 199.5 444 35.4
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 1.3e-47 194.9 445 34.4
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 1.7e-47 194.5 444 34.5
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 3.8e-47 193.4 445 34.4
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 6.5e-47 192.6 414 36.2
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 8.4e-47 192.2 450 35.1
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 2.5e-46 190.7 462 36.6
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 7.2e-46 189.1 449 37.4
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 9.3e-46 188.7 403 39.0
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 1.2e-45 188.3 445 35.7
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 2.1e-45 187.6 445 35.3
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.7e-45 187.2 452 35.0
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.7e-45 187.2 451 35.7
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.5e-45 186.8 444 34.2
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 4.6e-45 186.4 447 35.3
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 7.9e-45 185.7 466 35.2
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.8e-44 184.5 447 35.1
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.3e-44 184.1 434 33.2
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 1.1e-43 181.8 317 38.2
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 1.9e-43 181.0 439 35.1
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 1.9e-43 181.0 450 34.7
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 5.7e-43 179.5 442 35.1
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 7.4e-43 179.1 465 35.1
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.2e-42 177.6 440 32.7
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 3.7e-42 176.8 439 35.8
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 4.8e-42 176.4 446 34.3
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 6.3e-42 176.0 450 35.6
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 8.2e-42 175.6 446 34.3
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.4e-41 174.9 420 33.1
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 2.4e-41 174.1 454 32.6
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.4e-41 174.1 449 35.2
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 9.0e-41 172.2 448 35.0
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 3.4e-40 170.2 439 34.9
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 8.5e-39 165.6 450 34.4
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.5e-38 164.1 280 38.6
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 3.2e-38 163.7 442 33.3
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 4.2e-38 163.3 280 41.8
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 5.1e-36 156.4 447 32.7
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 6.7e-36 156.0 444 32.7
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 1.3e-34 151.8 448 33.3
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.3e-34 151.8 450 33.3
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 8.2e-34 149.1 452 31.2
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.1e-33 147.1 440 32.3
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 6.9e-33 146.0 445 30.8
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 1.2e-32 145.2 371 33.4
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 3.4e-32 143.7 372 33.9
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 3.4e-32 143.7 447 32.0
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 7.7e-32 142.5 373 35.9
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.7e-31 141.4 443 30.9
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 2.2e-31 141.0 374 34.0
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 8.5e-31 139.0 327 35.5
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 5.5e-30 136.3 327 35.5
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 7.9e-29 132.5 316 36.1
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 1.4e-28 131.7 445 31.2
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.5e-27 128.3 448 30.1
RcHm_v2.0_Chr3g0475791 Rosa chinensis HOM05D003379 ORTHO05D003862 5.7e-27 126.3 431 30.9
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 4.1e-25 120.2 336 36.0
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 7.2e-22 109.4 448 29.0
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 7.2e-22 109.4 289 35.3
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 2.1e-21 107.8 165 46.7
FAN05G5404 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.7e-18 98.2 374 31.0
FvH4_6g20211 Fragaria vesca HOM05D003379 ORTHO05D003862 1.8e-17 94.7 450 28.4
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 2.5e-14 84.3 416 25.0
Pp3c5_23700 Physcomitrium patens HOM05D003379 ORTHO05D003862 4.2e-14 83.6 377 27.9
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 1.2e-13 82.0 157 39.5
BcaNung03374 Brassica carinata HOM05D003379 ORTHO05D003862 1.6e-13 81.6 203 33.5
Hma1.2p1_0421F.1_g149960 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 1.6e-13 81.6 97 47.4
FAN05G4320 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.3e-12 77.8 190 34.7
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 6.8e-12 76.3 428 25.7
RcHm_v2.0_Chr2g0176501 Rosa chinensis HOM05D003379 ORTHO05D003862 8.8e-12 75.9 153 41.2
CARHR199410 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.0e-11 74.7 137 38.7
A05p12750 Brassica napus HOM05D003379 ORTHO05D003862 8.3e-10 69.3 128 40.6
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 7.0e-09 66.2 199 32.2
BcaC04g20129 Brassica carinata HOM05D003379 ORTHO05D003862 1.6e-08 65.1 90 46.7
C03p62180 Brassica napus HOM05D003379 ORTHO05D003862 2.0e-08 64.7 103 43.7
FAN14G0132 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.7e-08 64.3 374 26.7
BcaC01g02664 Brassica carinata HOM05D003379 ORTHO05D003862 5.9e-08 63.2 103 41.7
BolC3t18480H Brassica oleracea HOM05D003379 ORTHO05D003862 1.0e-07 62.4 103 41.7
BraA05t20213Z Brassica rapa HOM05D003379 ORTHO05D003862 6.5e-07 59.7 83 45.8
SalBow6G4465 Salvia bowleyana HOM05D003379 ORTHO05D003862 7.2e-06 56.2 163 33.7


User provided reference genes

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