Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 2.7e-85 318.5 151 100.0
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 9.3e-70 266.9 151 80.8
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 1.8e-65 252.7 125 90.4
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 3.1e-65 251.9 119 94.1
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 3.1e-65 251.9 147 82.3
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 4.0e-65 251.5 144 81.9
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 4.5e-64 248.1 151 78.1
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 2.9e-63 245.4 152 77.0
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 6.4e-63 244.2 144 82.6
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 5.4e-62 241.1 143 79.0
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 9.3e-62 240.4 143 79.0
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.1e-61 239.2 141 79.4
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 2.7e-61 238.8 151 74.8
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 2.7e-61 238.8 145 77.2
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 2.7e-61 238.8 151 78.1
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.7e-61 238.8 149 75.2
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 7.9e-61 237.3 141 78.7
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 1.0e-60 236.9 149 76.5
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 2.3e-60 235.7 119 87.4
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 2.3e-60 235.7 148 76.4
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 1.5e-59 233.0 121 84.3
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 1.9e-59 232.6 147 75.5
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 5.6e-59 231.1 149 74.5
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 9.6e-59 230.3 129 79.8
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 9.6e-59 230.3 145 75.2
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 1.3e-58 229.9 146 74.7
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 1.3e-58 229.9 117 85.5
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 1.6e-58 229.6 144 73.6
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 2.1e-58 229.2 149 75.2
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 2.8e-58 228.8 151 70.2
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 6.2e-58 227.6 142 76.1
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.2e-58 227.6 151 71.5
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 8.1e-58 227.3 143 74.8
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 1.8e-57 226.1 122 82.8
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 2.4e-57 225.7 153 72.5
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 5.3e-57 224.6 128 81.2
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 9.0e-57 223.8 131 76.3
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.2e-56 223.4 120 79.2
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 2.0e-56 222.6 153 70.6
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 2.0e-56 222.6 146 70.5
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 2.6e-56 222.2 153 71.2
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 5.8e-56 221.1 151 69.5
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 7.6e-56 220.7 135 77.0
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 7.6e-56 220.7 149 70.5
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 9.9e-56 220.3 149 68.5
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 9.9e-56 220.3 146 70.5
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 9.9e-56 220.3 143 73.4
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 1.3e-55 219.9 131 74.8
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 1.7e-55 219.5 144 72.9
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.2e-55 219.2 149 67.8
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.8e-55 218.4 151 69.5
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 4.9e-55 218.0 151 69.5
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 6.4e-55 217.6 151 66.9
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 8.4e-55 217.2 146 69.9
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 8.4e-55 217.2 149 69.1
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 8.4e-55 217.2 146 73.3
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.1e-54 216.9 151 68.2
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 1.4e-54 216.5 140 72.9
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.9e-54 216.1 152 71.7
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 2.4e-54 215.7 141 68.1
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.4e-54 215.7 151 68.9
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 2.4e-54 215.7 149 69.1
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 2.4e-54 215.7 109 88.1
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 4.2e-54 214.9 147 69.4
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 4.2e-54 214.9 140 72.1
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 5.5e-54 214.5 145 69.7
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 7.1e-54 214.2 147 68.0
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 7.1e-54 214.2 146 68.5
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 1.2e-53 213.4 147 70.7
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 1.2e-53 213.4 147 70.1
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.2e-53 213.4 149 65.8
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 2.1e-53 212.6 147 68.0
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 2.1e-53 212.6 147 70.1
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 2.7e-53 212.2 135 70.4
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 2.7e-53 212.2 157 65.0
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 3.5e-53 211.8 147 69.4
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 3.5e-53 211.8 147 69.4
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 3.5e-53 211.8 147 70.7
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 3.5e-53 211.8 150 68.7
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 6.0e-53 211.1 119 79.8
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 1.0e-52 210.3 147 69.4
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.0e-52 210.3 140 70.7
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 1.8e-52 209.5 147 70.1
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 1.8e-52 209.5 147 68.7
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 2.3e-52 209.1 128 75.0
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.3e-51 205.3 141 67.4
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 5.6e-51 204.5 147 65.3
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.6e-50 203.0 120 70.0
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 2.1e-50 202.6 143 67.1
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 3.7e-50 201.8 167 59.9
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 8.1e-50 200.7 151 65.6
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.1e-49 200.3 134 67.9
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 1.1e-49 200.3 122 70.5
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.2e-48 196.8 144 70.1
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.2e-48 196.8 148 62.8
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 1.2e-48 196.8 148 62.8
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.6e-48 195.7 122 69.7
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 3.4e-48 195.3 150 59.3
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 1.0e-47 193.7 121 67.8
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 2.5e-46 189.1 143 66.4
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 6.5e-39 164.5 85 84.7
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 2.7e-37 159.1 148 58.1
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 4.3e-35 151.8 124 55.6
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 1.3e-34 150.2 80 81.2
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 1.8e-33 146.4 117 56.4
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 3.1e-33 145.6 82 79.3
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 2.1e-29 132.9 92 64.1
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 2.7e-29 132.5 96 57.3
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 3.6e-29 132.1 92 64.1
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 5.7e-27 124.8 114 45.6
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 5.7e-27 124.8 119 54.6
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.8e-26 122.5 140 49.3
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 3.7e-26 122.1 144 49.3
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 4.8e-26 121.7 74 70.3
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 2.6e-24 115.9 89 52.8
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 5.9e-24 114.8 59 84.7
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 5.9e-24 114.8 93 50.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 2.3e-20 102.8 92 51.1
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 3.0e-20 102.4 93 50.5
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 5.7e-19 98.2 99 42.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 5.0e-15 85.1 67 56.7
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 5.5e-14 81.6 56 62.5
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 2.6e-11 72.8 71 54.9
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 1.7e-10 70.1 64 48.4
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 2.4e-09 66.2 40 70.0
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 2.4e-09 66.2 40 65.0
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.6e-08 63.5 39 71.8
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.0e-07 60.8 71 50.7
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 1.3e-07 60.5 88 42.0
FAN15G0330 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.2e-06 55.5 41 48.8
GSVIVG01029385001 Vitis vinifera HOM05D005641 ORTHO05D007953 9.4e-06 54.3 32 68.8


User provided reference genes

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