Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.2e-56 223.0 114 100.0
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 1.8e-33 146.0 113 73.5
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 6.4e-23 110.9 67 88.1
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.1e-22 110.2 70 84.3
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 7.8e-21 104.0 70 77.1
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.0e-20 103.6 69 81.2
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 2.3e-20 102.4 69 79.7
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.1e-19 100.1 70 78.6
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 7.3e-19 97.4 69 73.9
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.3e-18 96.7 69 73.9
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 1.3e-18 96.7 69 75.4
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.6e-18 96.3 70 72.9
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.1e-18 95.9 70 72.9
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 2.1e-18 95.9 69 72.5
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.1e-18 95.9 69 72.5
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 2.8e-18 95.5 70 72.9
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 3.6e-18 95.1 70 71.4
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 3.6e-18 95.1 66 74.2
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.8e-18 94.7 70 71.4
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.8e-18 94.7 70 71.4
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 4.8e-18 94.7 70 71.4
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.2e-18 94.4 70 71.4
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 8.1e-18 94.0 69 71.0
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 8.1e-18 94.0 69 71.0
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 8.1e-18 94.0 69 72.5
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 8.1e-18 94.0 70 70.0
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.1e-17 93.6 70 70.0
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.8e-17 92.8 66 74.2
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.8e-17 92.8 70 70.0
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.4e-17 92.4 69 71.0
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 2.4e-17 92.4 69 69.6
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 2.4e-17 92.4 69 71.0
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.4e-17 92.4 70 72.9
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 3.1e-17 92.0 69 71.0
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 3.1e-17 92.0 69 72.5
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 4.0e-17 91.7 68 72.1
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.3e-17 91.3 68 72.1
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 6.9e-17 90.9 66 72.7
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 9.0e-17 90.5 68 73.5
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 9.0e-17 90.5 66 74.2
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.2e-16 90.1 68 72.1
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.5e-16 89.7 68 69.1
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.5e-16 89.7 68 69.1
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.5e-16 89.7 69 68.1
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.5e-16 89.7 69 68.1
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.5e-16 89.7 66 71.2
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 2.6e-16 89.0 66 71.2
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 2.6e-16 89.0 116 50.9
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 2.6e-16 89.0 66 69.7
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 2.6e-16 89.0 66 69.7
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.6e-16 89.0 66 69.7
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 3.4e-16 88.6 66 71.2
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 3.4e-16 88.6 69 66.7
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 4.5e-16 88.2 66 69.7
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 5.8e-16 87.8 66 68.2
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 5.8e-16 87.8 66 68.2
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 5.8e-16 87.8 66 68.2
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 5.8e-16 87.8 66 68.2
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 5.8e-16 87.8 66 72.7
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 7.6e-16 87.4 66 72.7
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.3e-15 86.7 66 69.7
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.3e-15 86.7 66 69.7
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.3e-15 86.7 69 65.2
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.3e-15 86.7 66 72.7
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.7e-15 86.3 66 69.7
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.7e-15 86.3 68 67.6
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-15 86.3 68 67.6
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.7e-15 86.3 68 67.6
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.7e-15 86.3 68 67.6
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.7e-15 86.3 66 68.2
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 1.7e-15 86.3 68 69.1
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.7e-15 86.3 66 66.7
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.7e-15 86.3 68 66.2
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.2e-15 85.9 66 69.7
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 2.2e-15 85.9 66 65.2
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 2.2e-15 85.9 66 66.7
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 2.2e-15 85.9 66 66.7
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 2.2e-15 85.9 66 66.7
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.2e-15 85.9 68 67.6
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 2.2e-15 85.9 66 66.7
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.2e-15 85.9 66 71.2
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 2.9e-15 85.5 66 66.7
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 2.9e-15 85.5 66 66.7
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.9e-15 85.5 69 65.2
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.8e-15 85.1 68 67.6
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 3.8e-15 85.1 66 68.2
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 3.8e-15 85.1 66 68.2
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 4.9e-15 84.7 66 68.2
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 4.9e-15 84.7 66 66.7
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 4.9e-15 84.7 70 64.3
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 6.4e-15 84.3 66 65.2
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 6.4e-15 84.3 66 65.2
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 6.4e-15 84.3 66 65.2
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 6.4e-15 84.3 68 64.7
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 8.4e-15 84.0 68 69.1
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 8.4e-15 84.0 67 64.2
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.1e-14 83.6 66 65.2
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.4e-14 83.2 66 66.7
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.4e-14 83.2 66 66.7
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.4e-14 83.2 68 66.2
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.9e-14 82.8 66 68.2
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.2e-14 82.0 68 64.7
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.2e-14 82.0 68 64.7
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 7.1e-14 80.9 66 65.2
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 9.3e-14 80.5 66 63.6
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 9.3e-14 80.5 66 63.6
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 9.3e-14 80.5 66 63.6
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 9.3e-14 80.5 70 65.7
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.2e-13 80.1 67 67.2
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.6e-13 79.7 77 54.5
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.6e-13 79.7 68 63.2
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 1.6e-13 79.7 68 63.2
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.1e-13 79.3 66 63.6
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.5e-13 78.6 64 67.2
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.5e-13 78.6 68 61.8
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 4.6e-13 78.2 66 62.1
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 4.6e-13 78.2 66 62.1
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 4.6e-13 78.2 66 63.6
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 7.9e-13 77.4 66 60.6
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 3.0e-12 75.5 66 62.1
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 3.0e-12 75.5 45 88.9
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 3.9e-12 75.1 66 59.1
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 3.9e-12 75.1 66 60.6
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 3.9e-12 75.1 74 55.4
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.9e-11 72.8 68 61.8
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 2.5e-11 72.4 58 67.2
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 2.5e-11 72.4 56 67.9
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 2.5e-11 72.4 66 59.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 3.3e-11 72.0 66 59.1
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.3e-11 71.6 68 60.3
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 4.3e-11 71.6 66 60.6
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 4.3e-11 71.6 69 55.1
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 5.6e-11 71.2 50 76.0
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.8e-10 68.9 49 75.5
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.8e-10 68.9 49 75.5
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.6e-10 68.6 51 72.5
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.1e-10 67.4 70 55.7
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.1e-09 67.0 51 70.6
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.4e-09 65.9 68 58.8
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 5.3e-09 64.7 66 53.0
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 9.0e-09 63.9 66 53.0
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.5e-08 63.2 43 79.1
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.5e-08 63.2 66 57.6
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.0e-08 62.8 56 62.5
QL02p069049 Quercus lobata HOM05D004185 ORTHO05D337452 7.6e-08 60.8 33 93.9
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.4e-06 55.8 63 55.6
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 2.4e-06 55.8 75 44.0


User provided reference genes

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