Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 8.4e-32 139.8 74 100.0
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 2.1e-27 125.2 68 95.6
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.3e-24 115.9 68 86.8
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 2.9e-24 114.8 67 89.6
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 6.4e-24 113.6 67 88.1
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 8.4e-24 113.2 66 92.4
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 5.4e-23 110.5 67 88.1
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 9.3e-23 109.8 68 85.3
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 2.1e-22 108.6 67 82.1
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 2.7e-22 108.2 67 82.1
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.7e-22 108.2 67 82.1
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 7.8e-22 106.7 67 80.6
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 7.8e-22 106.7 68 80.9
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 7.8e-22 106.7 67 82.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.0e-21 106.3 67 82.1
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.0e-21 106.3 64 82.8
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.7e-21 105.5 68 79.4
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 2.3e-21 105.1 67 79.1
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.3e-21 105.1 67 79.1
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 2.3e-21 105.1 68 79.4
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 3.0e-21 104.8 68 77.9
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 3.0e-21 104.8 67 79.1
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 3.0e-21 104.8 68 77.9
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 3.9e-21 104.4 67 82.1
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.9e-21 104.4 68 77.9
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.9e-21 104.4 68 77.9
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.1e-21 104.0 68 77.9
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 5.1e-21 104.0 64 82.8
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 5.1e-21 104.0 68 77.9
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 6.6e-21 103.6 67 79.1
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 6.6e-21 103.6 68 76.5
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 8.7e-21 103.2 67 79.1
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.1e-20 102.8 66 80.3
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.1e-20 102.8 68 77.9
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.5e-20 102.4 66 80.3
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.5e-20 102.4 67 77.6
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.5e-20 102.4 68 80.9
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.9e-20 102.1 67 77.6
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.9e-20 102.1 67 77.6
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.9e-20 102.1 67 77.6
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 3.3e-20 101.3 66 80.3
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 4.3e-20 100.9 66 77.3
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 7.3e-20 100.1 64 79.7
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 9.6e-20 99.8 64 79.7
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 9.6e-20 99.8 66 75.8
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.3e-19 99.4 66 78.8
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.3e-19 99.4 64 79.7
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.6e-19 99.0 64 76.6
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 1.6e-19 99.0 64 76.6
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.6e-19 99.0 66 77.3
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.6e-19 99.0 64 81.2
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.1e-19 98.6 64 81.2
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.1e-19 98.6 64 76.6
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 2.1e-19 98.6 67 73.1
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 3.6e-19 97.8 64 75.0
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 3.6e-19 97.8 67 73.1
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.8e-19 97.4 64 78.1
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 4.8e-19 97.4 64 73.4
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 4.8e-19 97.4 64 73.4
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 4.8e-19 97.4 66 75.8
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.8e-19 97.4 66 75.8
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.8e-19 97.4 66 75.8
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 4.8e-19 97.4 64 76.6
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 4.8e-19 97.4 66 77.3
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 4.8e-19 97.4 66 74.2
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 6.2e-19 97.1 64 78.1
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 6.2e-19 97.1 64 73.4
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 6.2e-19 97.1 64 75.0
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 6.2e-19 97.1 66 75.8
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 6.2e-19 97.1 64 79.7
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 8.1e-19 96.7 64 75.0
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 8.1e-19 96.7 64 73.4
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 8.1e-19 96.7 64 75.0
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 8.1e-19 96.7 64 73.4
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 8.1e-19 96.7 64 79.7
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.1e-18 96.3 66 75.8
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 1.1e-18 96.3 68 72.1
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.1e-18 96.3 64 76.6
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.1e-18 96.3 64 76.6
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.4e-18 95.9 64 76.6
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.4e-18 95.9 64 75.0
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-18 95.5 64 73.4
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 1.8e-18 95.5 64 73.4
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 1.8e-18 95.5 64 73.4
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.8e-18 95.5 64 75.0
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.8e-18 95.5 64 75.0
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 2.4e-18 95.1 67 73.1
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.4e-18 95.1 64 71.9
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.4e-18 95.1 67 71.6
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 3.1e-18 94.7 64 73.4
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 3.1e-18 94.7 64 71.9
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 3.1e-18 94.7 64 71.9
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 3.1e-18 94.7 64 71.9
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 3.1e-18 94.7 64 71.9
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 4.0e-18 94.4 66 71.2
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 4.0e-18 94.4 64 75.0
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 4.0e-18 94.4 64 75.0
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 4.0e-18 94.4 64 73.4
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 4.0e-18 94.4 66 74.2
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 5.3e-18 94.0 66 74.2
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.3e-18 94.0 64 76.6
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 9.0e-18 93.2 66 72.7
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 2.6e-17 91.7 64 71.9
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.4e-17 91.3 66 71.2
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 4.5e-17 90.9 64 70.3
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 4.5e-17 90.9 66 71.2
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 4.5e-17 90.9 66 71.2
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 5.8e-17 90.5 64 71.9
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 7.6e-17 90.1 64 70.3
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.9e-17 89.7 66 69.7
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 9.9e-17 89.7 67 68.7
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.2e-16 88.6 68 72.1
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.2e-16 88.6 64 68.8
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 3.8e-16 87.8 64 68.8
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.8e-16 87.8 68 69.1
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.8e-16 87.8 68 69.1
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 6.4e-16 87.0 64 67.2
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 1.1e-15 86.3 64 68.8
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 1.4e-15 85.9 48 91.7
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.9e-15 85.5 64 65.6
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 2.4e-15 85.1 64 70.3
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 4.2e-15 84.3 64 67.2
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.7e-14 81.6 66 66.7
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 4.6e-14 80.9 69 63.8
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.0e-14 80.5 66 65.2
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 6.0e-14 80.5 64 65.6
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 6.0e-14 80.5 56 73.2
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 6.0e-14 80.5 66 63.6
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 6.0e-14 80.5 67 59.7
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.3e-13 79.3 48 83.3
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.3e-13 79.3 64 65.6
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 2.3e-13 78.6 54 72.2
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 6.7e-13 77.0 47 83.0
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 6.7e-13 77.0 47 83.0
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 6.7e-13 77.0 63 65.1
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.7e-13 76.6 49 79.6
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.5e-12 75.9 64 60.9
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.5e-12 75.1 49 77.6
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.3e-11 72.8 64 57.8
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.1e-11 72.0 68 58.8
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.1e-11 72.0 64 62.5
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 3.7e-11 71.2 41 87.8
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.1e-10 69.7 64 59.4
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 1.8e-10 68.9 54 64.8
QL02p069049 Quercus lobata HOM05D004185 ORTHO05D337452 2.0e-09 65.5 33 100.0
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.5e-08 60.5 48 66.7
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 6.5e-08 60.5 61 50.8
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.2e-06 56.2 40 65.0


User provided reference genes

Program Settings