Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 4.3e-56 221.1 111 100.0
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 4.0e-46 188.0 110 84.5
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 4.0e-38 161.4 110 74.5
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 2.0e-37 159.1 110 73.6
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 1.6e-31 139.4 110 68.2
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 6.2e-31 137.5 110 63.6
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 2.4e-30 135.6 109 60.6
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 1.2e-29 133.3 105 65.7
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 5.8e-29 131.0 109 67.0
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 2.2e-28 129.0 98 66.3
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 5.5e-27 124.4 98 68.4
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 9.3e-27 123.6 98 65.3
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 9.3e-27 123.6 110 62.7
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 1.2e-26 123.2 114 60.5
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 1.2e-26 123.2 96 68.8
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 3.5e-26 121.7 99 65.7
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 4.6e-26 121.3 111 59.5
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 6.0e-26 120.9 101 70.3
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 6.0e-26 120.9 101 70.3
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 2.3e-25 119.0 99 64.6
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.3e-25 119.0 92 70.7
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 3.0e-25 118.6 101 62.4
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 3.0e-25 118.6 103 59.2
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 8.7e-25 117.1 84 71.4
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 1.1e-24 116.7 105 60.0
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 1.5e-24 116.3 99 64.6
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 1.9e-24 115.9 99 62.6
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 2.5e-24 115.5 99 63.6
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 2.5e-24 115.5 103 58.3
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 3.3e-24 115.2 112 55.4
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 7.4e-24 114.0 106 57.5
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 9.6e-24 113.6 92 64.1
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 1.6e-23 112.8 113 54.0
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.1e-23 112.5 111 58.6
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 2.8e-23 112.1 94 63.8
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 3.7e-23 111.7 111 55.9
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 1.8e-22 109.4 101 60.4
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 3.1e-22 108.6 112 57.1
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 4.0e-22 108.2 99 61.6
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 4.0e-22 108.2 94 57.4
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 4.0e-22 108.2 97 59.8
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 6.9e-22 107.5 66 77.3
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 1.0e-20 103.6 100 58.0
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.3e-20 103.2 121 53.7
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 1.7e-20 102.8 110 55.5
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 1.7e-20 102.8 96 58.3
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 1.7e-20 102.8 106 53.8
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 2.2e-20 102.4 102 53.9
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 2.9e-20 102.1 110 55.5
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 8.4e-20 100.5 107 53.3
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 1.1e-19 100.1 106 54.7
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 1.1e-19 100.1 110 51.8
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 4.2e-19 98.2 82 62.2
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.2e-18 96.7 99 51.5
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.2e-18 96.7 71 67.6
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.6e-18 96.3 100 56.0
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.1e-18 95.9 98 53.1
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 2.7e-18 95.5 114 50.9
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 3.5e-18 95.1 95 55.8
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 3.5e-18 95.1 110 50.9
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.5e-18 95.1 98 52.0
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 3.5e-18 95.1 62 71.0
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.3e-17 93.2 99 52.5
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 1.8e-17 92.8 113 49.6
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 1.8e-17 92.8 99 55.6
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 1.8e-17 92.8 114 48.2
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 1.1e-16 90.1 91 53.8
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 1.1e-16 90.1 112 51.8
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.5e-16 89.0 71 66.2
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 3.3e-16 88.6 85 54.1
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 3.3e-16 88.6 85 54.1
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 7.4e-16 87.4 62 66.1
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 7.4e-16 87.4 110 50.0
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 7.4e-16 87.4 75 58.7
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 9.7e-16 87.0 75 58.7
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 1.6e-15 86.3 70 60.0
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 6.3e-15 84.3 62 62.9
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 8.2e-15 84.0 103 48.5
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 1.1e-14 83.6 99 50.5
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 1.8e-14 82.8 102 49.0
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 4.1e-14 81.6 81 55.6
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 4.1e-14 81.6 81 55.6
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 4.1e-14 81.6 81 55.6
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 4.1e-14 81.6 106 47.2
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 5.3e-14 81.3 89 50.6
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 4.5e-13 78.2 90 52.2
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 7.6e-13 77.4 87 54.0
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 1.0e-12 77.0 85 50.6
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 1.3e-12 76.6 106 49.1
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 3.8e-12 75.1 76 53.9
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 3.8e-12 75.1 67 59.7
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 6.5e-12 74.3 58 60.3
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 6.5e-12 74.3 102 49.0
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 8.5e-12 73.9 109 44.0
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.4e-11 73.2 114 43.0
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 1.4e-11 73.2 55 67.3
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 3.2e-11 72.0 90 45.6
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 4.2e-11 71.6 94 50.0
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 7.2e-11 70.9 89 51.7
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 9.4e-11 70.5 73 49.3
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 1.2e-10 70.1 95 49.5
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 2.1e-10 69.3 59 54.2
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 1.0e-09 67.0 71 49.3
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 1.0e-09 67.0 66 56.1
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 1.9e-08 62.8 54 63.0
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 9.7e-08 60.5 70 51.4
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 2.2e-07 59.3 70 51.4
arahy.Tifrunner.gnm1.ann1.K9PA59 Arachis hypogaea HOM05D006882 ORTHO05D008688 8.2e-07 57.4 44 63.6
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 8.2e-07 57.4 77 45.5
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 5.3e-06 54.7 79 45.6


User provided reference genes

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