Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 2.2e-154 548.9 271 100.0
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.7e-106 389.8 215 87.0
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 7.1e-105 384.4 215 86.0
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.7e-96 355.9 213 79.8
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 8.8e-95 350.9 212 76.9
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.9e-94 349.7 213 76.1
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 3.3e-94 349.0 215 75.8
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 3.3e-94 349.0 213 75.1
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 1.3e-93 347.1 212 75.5
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.7e-93 346.7 210 76.7
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 2.2e-93 346.3 221 73.3
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 2.2e-93 346.3 213 77.5
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 8.2e-93 344.4 222 74.8
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.8e-92 343.2 223 73.1
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.8e-92 343.2 212 72.6
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 6.9e-92 341.3 213 73.2
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 1.2e-91 340.5 210 74.8
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.5e-91 340.1 212 74.1
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 2.0e-91 339.7 212 75.5
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.6e-91 339.3 213 73.7
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 2.6e-91 339.3 213 73.7
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 5.9e-91 338.2 209 76.1
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.0e-90 337.4 206 76.7
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.3e-90 337.0 210 73.3
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 1.3e-90 337.0 211 73.5
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 1.3e-90 337.0 213 72.8
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.7e-90 336.7 213 73.2
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 2.2e-90 336.3 212 72.6
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.2e-90 336.3 210 73.8
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 2.9e-90 335.9 212 70.3
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 2.9e-90 335.9 213 72.8
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 1.1e-89 334.0 216 72.2
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 1.9e-89 333.2 214 73.8
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 1.9e-89 333.2 204 77.0
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 2.5e-89 332.8 213 70.4
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 3.2e-89 332.4 221 70.1
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 3.2e-89 332.4 216 70.8
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 3.2e-89 332.4 213 71.8
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 5.5e-89 331.6 216 71.3
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 5.5e-89 331.6 209 71.8
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 7.2e-89 331.3 220 71.8
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 1.2e-88 330.5 217 71.0
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.2e-88 330.5 212 70.8
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 1.2e-88 330.5 209 71.8
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.6e-88 330.1 209 72.2
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 2.1e-88 329.7 212 73.6
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 2.7e-88 329.3 210 70.5
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 1.4e-87 327.0 209 70.8
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.4e-87 327.0 220 70.5
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.4e-87 327.0 211 69.7
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 1.4e-87 327.0 210 72.9
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 1.4e-87 327.0 214 70.6
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 3.0e-87 325.9 207 72.9
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 5.1e-87 325.1 215 70.7
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 6.7e-87 324.7 210 69.5
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 8.8e-87 324.3 213 70.9
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.5e-86 323.6 213 69.0
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 4.4e-86 322.0 215 68.8
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 4.4e-86 322.0 210 70.0
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 7.4e-86 321.2 206 71.8
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 6.3e-85 318.2 209 68.4
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.1e-84 317.4 216 66.7
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 5.3e-84 315.1 212 69.8
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 7.0e-84 314.7 212 69.3
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 7.0e-84 314.7 232 65.5
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 9.1e-84 314.3 206 70.4
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.2e-83 313.9 217 68.2
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 1.5e-83 313.5 212 69.3
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.5e-83 313.5 212 69.8
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 1.5e-83 313.5 208 69.7
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 2.0e-83 313.2 205 70.7
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 4.5e-83 312.0 217 67.3
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 4.5e-83 312.0 217 68.2
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 7.7e-83 311.2 212 69.3
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 7.7e-83 311.2 212 69.3
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 1.0e-82 310.8 213 67.6
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 2.2e-82 309.7 212 67.9
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 6.5e-82 308.1 215 64.2
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 8.5e-82 307.8 213 65.7
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 8.5e-82 307.8 245 61.2
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 8.5e-82 307.8 212 67.0
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 1.4e-81 307.0 211 68.7
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 1.4e-81 307.0 212 67.0
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.2e-81 305.8 212 67.0
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 7.2e-81 304.7 212 67.0
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 7.2e-81 304.7 206 67.5
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.7e-80 302.8 225 63.1
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 4.7e-80 302.0 203 69.0
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 7.4e-78 294.7 207 63.3
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 1.7e-77 293.5 211 65.9
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 8.2e-77 291.2 147 92.5
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 1.1e-76 290.8 207 64.7
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.5e-75 285.8 207 66.7
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 4.5e-75 285.4 211 64.0
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 1.0e-74 284.3 214 60.7
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 8.5e-74 281.2 209 63.6
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 3.2e-73 279.3 191 65.4
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.2e-73 279.3 194 66.0
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 1.6e-72 276.9 192 68.2
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 6.1e-72 275.0 211 60.7
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.4e-71 273.9 219 58.4
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 1.8e-71 273.5 218 60.6
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.3e-69 267.3 196 63.8
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 2.2e-69 266.5 206 57.8
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 3.7e-69 265.8 177 70.1
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.0e-67 260.0 196 63.3
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 2.7e-67 259.6 205 56.6
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.5e-67 259.2 205 57.1
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.1e-65 254.2 206 59.7
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.3e-63 246.5 189 64.6
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 4.0e-63 245.7 205 55.6
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.2e-63 245.4 169 66.9
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.0e-58 231.1 207 55.1
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 2.3e-58 229.9 207 54.6
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 2.3e-58 229.9 203 51.2
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 1.9e-57 226.9 151 72.2
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 4.2e-57 225.7 145 66.9
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 4.7e-56 222.2 145 68.3
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.2e-55 218.8 207 52.7
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.1e-52 209.1 238 47.9
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.2e-51 207.6 186 51.1
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.8e-48 196.4 126 69.8
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.2e-45 186.8 166 52.4
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.6e-43 180.6 209 41.6
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.7e-43 179.9 199 46.7
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.8e-43 178.3 163 52.1
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.6e-42 174.9 202 46.0
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 6.0e-35 152.1 107 66.4
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 1.5e-33 147.5 110 62.7
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 1.5e-33 147.5 146 55.5
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 9.5e-33 144.8 146 54.1
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 9.9e-30 134.8 120 60.0
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 3.2e-28 129.8 79 68.4
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 7.8e-27 125.2 230 34.3
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 1.3e-26 124.4 218 33.5
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.2e-24 117.9 138 48.6
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 6.8e-23 112.1 209 34.9
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 8.9e-23 111.7 76 69.7
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 3.4e-22 109.8 80 66.2
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 3.2e-20 103.2 66 69.7
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.3e-17 93.2 201 30.3
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 1.2e-14 84.7 200 27.5
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.3e-13 81.3 108 44.4
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.7e-13 80.9 45 73.3
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 3.2e-12 76.6 44 77.3
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.2e-12 76.3 84 46.4
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 5.4e-12 75.9 175 28.6
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 3.5e-11 73.2 47 68.1
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 2.3e-10 70.5 201 24.9
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 3.3e-09 66.6 81 48.1
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 9.6e-09 65.1 79 48.1
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 9.6e-09 65.1 40 72.5


User provided reference genes

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