Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 2.2e-260 901.7 441 100.0
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 1.6e-210 736.1 438 85.2
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 5.1e-185 651.4 438 75.6
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 1.1e-179 633.6 439 73.3
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 2.1e-170 602.8 438 69.6
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 1.5e-168 596.7 477 63.3
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 3.3e-168 595.5 437 68.6
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 4.3e-168 595.1 444 67.1
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 2.8e-167 592.4 438 67.4
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 1.4e-166 590.1 438 68.5
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 4.5e-165 585.1 455 65.1
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 5.9e-165 584.7 477 62.3
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 5.9e-165 584.7 434 65.0
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 8.5e-164 580.9 434 64.5
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 1.2e-162 577.0 438 64.2
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 3.6e-162 575.5 431 64.7
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 7.9e-162 574.3 438 66.4
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 3.0e-161 572.4 436 65.8
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 8.8e-161 570.9 438 65.1
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 2.2e-159 566.2 438 64.8
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 1.8e-158 563.1 438 65.5
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 5.3e-158 561.6 500 59.6
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 5.3e-158 561.6 440 63.6
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 6.9e-158 561.2 438 63.2
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 2.6e-157 559.3 477 59.5
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 5.9e-157 558.1 438 62.6
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 7.7e-157 557.8 438 63.7
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 7.7e-157 557.8 438 63.5
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 1.0e-156 557.4 438 63.7
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 6.5e-156 554.7 438 64.6
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 1.1e-155 553.9 443 64.3
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 7.2e-155 551.2 477 58.9
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 1.2e-154 550.4 464 59.7
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 1.2e-154 550.4 438 62.8
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 7.9e-154 547.7 442 61.5
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 1.0e-153 547.4 438 63.9
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 3.0e-153 545.8 438 63.7
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 3.9e-153 545.4 438 63.9
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 5.1e-153 545.0 438 62.6
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 8.8e-153 544.3 437 62.9
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 1.1e-152 543.9 439 62.0
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 2.6e-152 542.7 454 60.6
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 3.3e-152 542.3 438 63.0
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 4.4e-152 542.0 438 63.5
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 5.7e-152 541.6 468 59.8
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 9.7e-152 540.8 438 61.6
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 2.2e-151 539.7 437 62.0
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 3.7e-151 538.9 511 56.0
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 4.8e-151 538.5 439 61.5
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 7.0e-150 534.6 392 67.1
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 2.6e-149 532.7 438 61.2
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 1.3e-148 530.4 438 61.9
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 4.2e-147 525.4 438 61.0
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 4.2e-147 525.4 438 61.0
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 1.6e-146 523.5 457 59.5
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 3.6e-146 522.3 434 61.8
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 3.6e-146 522.3 438 61.0
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 8.0e-146 521.2 438 61.0
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 1.4e-145 520.4 438 60.5
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 1.5e-144 516.9 438 60.7
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 1.5e-144 516.9 438 60.7
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 5.7e-144 515.0 414 67.9
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-143 513.8 438 60.3
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.7e-143 513.5 438 59.6
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 2.8e-143 512.7 438 60.3
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 7.0e-142 508.1 438 58.2
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 7.0e-142 508.1 431 60.1
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 5.9e-141 505.0 438 59.1
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 3.8e-140 502.3 451 59.0
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 3.8e-140 502.3 434 58.1
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 1.9e-139 500.0 431 59.6
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 9.4e-139 497.7 438 57.1
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 1.6e-138 496.9 456 57.9
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 4.0e-137 492.3 437 60.2
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 6.8e-137 491.5 441 59.2
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 2.2e-135 486.5 438 55.9
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 3.7e-135 485.7 471 55.0
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.1e-134 484.2 438 58.2
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 1.1e-134 484.2 441 59.0
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 9.1e-134 481.1 477 52.2
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 3.5e-133 479.2 353 64.6
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 5.0e-132 475.3 437 55.4
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 1.1e-131 474.2 480 50.8
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 4.7e-130 468.8 440 54.5
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 1.5e-128 463.8 455 53.0
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 1.7e-127 460.3 388 65.2
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.6e-125 453.8 424 55.2
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 1.9e-123 446.8 357 60.8
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 1.9e-123 446.8 357 60.8
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 7.2e-123 444.9 437 54.7
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 3.6e-122 442.6 369 62.3
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 1.4e-121 440.7 423 54.1
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 2.3e-121 439.9 362 60.5
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 4.0e-121 439.1 362 60.5
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 1.6e-117 427.2 434 53.2
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 4.7e-114 415.6 437 52.6
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 8.9e-113 411.4 355 59.2
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.2e-109 401.0 353 57.5
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.5e-107 394.0 431 47.6
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.5e-107 394.0 431 47.6
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 7.5e-104 381.7 438 49.8
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.1e-102 377.9 377 53.3
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 2.9e-95 353.2 379 50.9
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 4.9e-95 352.4 307 57.3
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 6.4e-95 352.1 340 56.5
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 6.6e-92 342.0 430 42.6
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.3e-82 311.2 452 37.2
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 1.5e-80 304.3 437 37.3
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 9.0e-73 278.5 273 51.3
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.5e-67 261.2 430 36.7
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.5e-51 208.0 405 34.1
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 3.3e-51 206.8 168 61.9
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 3.1e-49 200.3 355 35.5
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.9e-46 191.0 322 40.7
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.0e-44 185.3 122 69.7
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.3e-44 184.1 121 69.4
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.7e-42 177.9 136 64.0
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 8.2e-42 175.6 121 63.6
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 7.2e-38 162.5 337 32.6
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 4.8e-34 149.8 156 51.9
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 8.2e-34 149.1 168 47.6
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.4e-33 148.3 115 67.0
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 9.1e-25 119.0 67 79.1
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 6.5e-23 112.8 288 29.2
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.9e-22 111.3 304 30.6
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 2.2e-18 97.8 94 46.8
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 8.3e-18 95.9 121 43.8
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 8.3e-18 95.9 70 62.9
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 2.4e-09 67.8 56 53.6
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 5.9e-08 63.2 91 42.9


User provided reference genes

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