Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p064885 Quercus lobata HOM05D005170 ORTHO05D006985 4.8e-261 904.0 484 100.0
Cfa007711 Carpinus fangiana HOM05D005170 ORTHO05D006985 1.3e-162 577.0 420 74.0
CiPaw.03G081400 Carya illinoinensis HOM05D005170 ORTHO05D006985 8.1e-160 567.8 420 73.3
Prupe.3G247200 Prunus persica HOM05D005170 ORTHO05D006985 1.7e-136 490.3 423 68.1
Dinv34895 Davidia involucrata HOM05D005170 ORTHO05D006985 5.1e-130 468.8 420 61.4
Sabra04G0072900 Salix brachista HOM05D005170 ORTHO05D006985 1.7e-128 463.8 422 61.1
Potri.004G111500 Populus trichocarpa HOM05D005170 ORTHO05D006985 1.4e-127 460.7 422 60.9
GSVIVG01036517001 Vitis vinifera HOM05D005170 ORTHO05D006985 2.6e-126 456.4 422 63.0
TWI34G1112 Tripterygium wilfordii HOM05D005170 ORTHO05D006985 4.4e-121 439.1 433 60.3
Manes.01G104800 Manihot esculenta HOM05D005170 ORTHO05D006985 7.4e-121 438.3 425 61.2
Cpa.g.sc14.254 Carica papaya HOM05D005170 ORTHO05D006985 2.8e-120 436.4 421 59.4
MD09G1076900 Malus domestica HOM05D005170 ORTHO05D006985 1.2e-118 431.0 403 65.0
Gohir.A07G178500 Gossypium hirsutum HOM05D005170 ORTHO05D006985 2.0e-118 430.3 422 61.4
Thecc.04G110100 Theobroma cacao HOM05D005170 ORTHO05D006985 2.9e-117 426.4 421 62.7
Gohir.D07G185600 Gossypium hirsutum HOM05D005170 ORTHO05D006985 5.0e-117 425.6 423 60.3
vmacro05605 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 1.0e-114 417.9 420 56.4
Ciclev10011153m.g Citrus clementina HOM05D005170 ORTHO05D006985 3.0e-114 416.4 421 59.4
Rhsim10G0060500 Rhododendron simsii HOM05D005170 ORTHO05D006985 3.0e-114 416.4 420 58.6
RcHm_v2.0_Chr2g0164481 Rosa chinensis HOM05D005170 ORTHO05D006985 3.0e-114 416.4 397 63.2
Actinidia36275 Actinidia chinensis HOM05D005170 ORTHO05D006985 6.7e-114 415.2 418 57.2
RcHm_v2.0_Chr2g0164441 Rosa chinensis HOM05D005170 ORTHO05D006985 1.5e-113 414.1 397 63.2
CANSAT64G0674 Cannabis sativa HOM05D005170 ORTHO05D006985 2.0e-113 413.7 421 57.2
COL.COLO4_00229 Corchorus olitorius HOM05D005170 ORTHO05D006985 5.7e-113 412.1 426 60.6
Gorai.001G206200 Gossypium raimondii HOM05D005170 ORTHO05D006985 1.8e-111 407.1 407 60.2
Lalb_Chr10g0092611 Lupinus albus HOM05D005170 ORTHO05D006985 2.4e-111 406.8 440 56.1
MELO3C018906.2 Cucumis melo HOM05D005170 ORTHO05D006985 3.1e-111 406.4 428 59.6
PGR004G2610 Punica granatum HOM05D005170 ORTHO05D006985 2.0e-110 403.7 421 58.7
Glyma.08G253900 Glycine max HOM05D005170 ORTHO05D006985 6.5e-109 398.7 442 56.8
FvH4_6g46110 Fragaria vesca HOM05D005170 ORTHO05D006985 1.9e-108 397.1 398 61.8
Sed0018763 Sechium edule HOM05D005170 ORTHO05D006985 1.9e-108 397.1 429 58.5
Lj4A126T71 Lonicera japonica HOM05D005170 ORTHO05D006985 5.5e-108 395.6 425 55.3
vmacro17105 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 5.5e-108 395.6 421 53.9
ClCG07G016130 Citrullus lanatus HOM05D005170 ORTHO05D006985 1.2e-107 394.4 429 58.5
CSS0017694 Camellia sinensis var. sinensis HOM05D005170 ORTHO05D006985 2.1e-107 393.7 421 57.0
CSS0024263 Camellia sinensis var. sinensis HOM05D005170 ORTHO05D006985 2.1e-107 393.7 421 57.0
Glyma.18G276300 Glycine max HOM05D005170 ORTHO05D006985 4.7e-107 392.5 443 58.0
arahy.Tifrunner.gnm1.ann1.66GFWV Arachis hypogaea HOM05D005170 ORTHO05D006985 3.0e-106 389.8 441 55.1
CsaV3_4G009930 Cucumis sativus L. HOM05D005170 ORTHO05D006985 4.0e-106 389.4 429 57.6
arahy.Tifrunner.gnm1.ann1.3DLK77 Arachis hypogaea HOM05D005170 ORTHO05D006985 5.7e-105 385.6 440 54.5
Eucgr.I02082 Eucalyptus grandis HOM05D005170 ORTHO05D006985 6.3e-104 382.1 421 57.2
VMungo1383G1046 Vigna mungo HOM05D005170 ORTHO05D006985 1.1e-103 381.3 443 55.3
Nitab4.5_0002978g0100 Nicotiana tabacum HOM05D005170 ORTHO05D006985 1.4e-103 380.9 419 54.9
Hund16252 Selenicereus undatus HOM05D005170 ORTHO05D006985 9.1e-103 378.3 420 52.4
PGSC0003DMG400001473 Solanum tuberosum HOM05D005170 ORTHO05D006985 1.2e-102 377.9 421 53.9
Aqoxy3G03767 Aquilegia oxysepala HOM05D005170 ORTHO05D006985 2.7e-102 376.7 446 53.1
Solyc02g089360.4 Solanum lycopersicum HOM05D005170 ORTHO05D006985 5.9e-102 375.6 420 53.6
Cc07_g04630 Coffea canephora HOM05D005170 ORTHO05D006985 1.7e-101 374.0 429 50.8
Phvul.008G024500 Phaseolus vulgaris HOM05D005170 ORTHO05D006985 2.3e-101 373.6 443 55.3
CAN.G497.45 Capsicum annuum HOM05D005170 ORTHO05D006985 5.0e-101 372.5 421 53.4
Nn4g23569 Nelumbo nucifera HOM05D005170 ORTHO05D006985 4.2e-100 369.4 422 53.6
Nitab4.5_0002171g0080 Nicotiana tabacum HOM05D005170 ORTHO05D006985 5.5e-100 369.0 433 52.2
Sopen02g034140 Solanum pennellii HOM05D005170 ORTHO05D006985 7.2e-100 368.6 420 52.6
Ca_06959_v3 Cicer arietinum L. HOM05D005170 ORTHO05D006985 1.0e-98 364.8 441 54.4
Medtr7g017500 Medicago truncatula HOM05D005170 ORTHO05D006985 3.4e-97 359.8 461 51.0
Lj1g0005667 Lotus japonicus HOM05D005170 ORTHO05D006985 2.4e-95 353.6 463 52.3
Ah.16g100870 Amaranthus hybridus HOM05D005170 ORTHO05D006985 7.0e-95 352.1 424 50.2
DCAR_007542 Daucus carota HOM05D005170 ORTHO05D006985 2.0e-94 350.5 417 53.5
EL10Ac2g04408 Beta vulgaris HOM05D005170 ORTHO05D006985 5.9e-94 349.0 428 49.8
Oeu062190.2 Olea europaea HOM05D005170 ORTHO05D006985 5.0e-93 345.9 434 51.6
TPR.G3272 Trifolium pratense HOM05D005170 ORTHO05D006985 8.6e-93 345.1 463 51.2
AUR62023134 Chenopodium quinoa HOM05D005170 ORTHO05D006985 9.5e-92 341.7 428 49.1
Hma1.2p1_2186F.1_g316400 Hydrangea macrophylla HOM05D005170 ORTHO05D006985 1.2e-91 341.3 420 49.8
Psat3g194480 Pisum sativum HOM05D005170 ORTHO05D006985 2.1e-91 340.5 467 50.7
Sc11g0008940 Simmondsia chinensis HOM05D005170 ORTHO05D006985 3.6e-91 339.7 413 52.5
Peaxi162Scf00020g02131 Petunia axillaris HOM05D005170 ORTHO05D006985 8.0e-91 338.6 426 52.1
MSTRG.2967 Avicennia marina HOM05D005170 ORTHO05D006985 3.1e-90 336.7 437 52.4
vmacro23470 Vaccinium macrocarpon HOM05D005170 ORTHO05D006985 6.8e-90 335.5 421 49.4
Migut.H00575 Erythranthe guttata HOM05D005170 ORTHO05D006985 3.7e-88 329.7 440 50.2
THA.LOC104805534 Tarenaya hassleriana HOM05D005170 ORTHO05D006985 1.4e-87 327.8 434 49.3
ECA246G1099 Erigeron canadensis HOM05D005170 ORTHO05D006985 3.2e-87 326.6 420 47.6
SGA_v2.0_scaffold52G19060 Striga asiatica HOM05D005170 ORTHO05D006985 4.3e-84 316.2 416 50.0
Lsat_1_v5_gn_3_95261 Lactuca sativa HOM05D005170 ORTHO05D006985 2.8e-83 313.5 420 46.9
PSO063G4379 Papaver somniferum HOM05D005170 ORTHO05D006985 8.0e-83 312.0 426 46.5
PSO782G1791 Papaver somniferum HOM05D005170 ORTHO05D006985 4.0e-82 309.7 424 46.7
AUR62009453 Chenopodium quinoa HOM05D005170 ORTHO05D006985 5.8e-81 305.8 421 45.1
ATR0691G089 Amborella trichopoda HOM05D005170 ORTHO05D006985 6.4e-80 302.4 429 46.9
PSO339G2512 Papaver somniferum HOM05D005170 ORTHO05D006985 1.2e-78 298.1 426 45.1
Aa31LG9G16850 Aethionema arabicum HOM05D005170 ORTHO05D006985 3.0e-77 293.5 424 46.2
CDE02G1515 Ceratophyllum demersum HOM05D005170 ORTHO05D006985 6.6e-77 292.4 426 44.1
HPP92_019180 Vanilla planifolia HOM05D005170 ORTHO05D006985 2.5e-76 290.4 423 44.2
FAN14G1739 Fragaria x ananassa HOM05D005170 ORTHO05D006985 4.3e-76 289.7 296 56.1
FAN09G2425 Fragaria x ananassa HOM05D005170 ORTHO05D006985 9.5e-76 288.5 396 49.5
Thhalv10027659m.g Eutrema salsugineum HOM05D005170 ORTHO05D006985 2.3e-74 283.9 428 44.6
arahy.Tifrunner.gnm1.ann1.87D3N1 Arachis hypogaea HOM05D005170 ORTHO05D006985 8.9e-74 282.0 395 48.4
Carub.0007s3703 Capsella rubella HOM05D005170 ORTHO05D006985 1.3e-72 278.1 430 44.0
BcaB06g27252 Brassica carinata HOM05D005170 ORTHO05D006985 2.2e-72 277.3 433 43.6
CARHR263780 Cardamine hirsuta HOM05D005170 ORTHO05D006985 4.9e-72 276.2 430 44.0
FAN05G5078 Fragaria x ananassa HOM05D005170 ORTHO05D006985 1.4e-71 274.6 397 48.6
Os06g0275900 Oryza sativa ssp. japonica HOM05D005170 ORTHO05D006985 4.1e-71 273.1 424 47.9
Zm00001eb380550 Zea mays HOM05D005170 ORTHO05D006985 1.6e-70 271.2 424 46.2
arahy.Tifrunner.gnm1.ann1.QEN3W4 Arachis hypogaea HOM05D005170 ORTHO05D006985 2.1e-70 270.8 370 48.6
BcaC02g09673 Brassica carinata HOM05D005170 ORTHO05D006985 2.1e-70 270.8 435 41.8
C04p45420 Brassica napus HOM05D005170 ORTHO05D006985 2.1e-70 270.8 435 41.8
BolC4t26124H Brassica oleracea HOM05D005170 ORTHO05D006985 2.1e-70 270.8 435 41.8
AT5G38840 Arabidopsis thaliana HOM05D005170 ORTHO05D006985 7.8e-70 268.9 434 44.0
HanXRQChr12g0380201 Helianthus annuus HOM05D005170 ORTHO05D006985 3.3e-68 263.5 426 44.4
SHI25849 Sapria himalayana HOM05D005170 ORTHO05D006985 1.2e-67 261.5 409 43.0
FAN02G2580 Fragaria x ananassa HOM05D005170 ORTHO05D006985 1.6e-67 261.2 282 54.6
A04p11710 Brassica napus HOM05D005170 ORTHO05D006985 1.1e-66 258.5 434 41.5
BraA04t16838Z Brassica rapa HOM05D005170 ORTHO05D006985 1.1e-66 258.5 434 41.5
AL7G51600 Arabidopsis lyrata HOM05D005170 ORTHO05D006985 2.6e-65 253.8 429 41.7
unitig_899.g15113 Utricularia gibba HOM05D005170 ORTHO05D006985 2.9e-64 250.4 404 40.3
arahy.Tifrunner.gnm1.ann1.NM7AU0 Arachis hypogaea HOM05D005170 ORTHO05D006985 6.4e-64 249.2 352 47.2
Sp7g03070 Schrenkiella parvula HOM05D005170 ORTHO05D006985 1.8e-58 231.1 427 40.5
TAR629G3016 Trochodendron aralioides HOM05D005170 ORTHO05D006985 1.4e-39 168.3 196 54.1
Pp3c14_10960 Physcomitrium patens HOM05D005170 ORTHO05D006985 4.2e-39 166.8 435 34.3
Actinidia18094 Actinidia chinensis HOM05D005170 ORTHO05D006985 1.8e-37 161.4 158 57.0
arahy.Tifrunner.gnm1.ann1.5GV78D Arachis hypogaea HOM05D005170 ORTHO05D006985 3.0e-37 160.6 192 50.0
SEGI_17824 Sequoiadendron giganteum HOM05D000555 ORTHO05D000646 1.1e-34 152.1 315 37.1
AagrBONN_evm.TU.Sc2ySwM_344.2160 Anthoceros agrestis HOM05D005170 ORTHO05D006985 1.4e-31 141.7 433 31.9
Mapoly0045s0050 Marchantia polymorpha HOM05D005170 ORTHO05D006985 3.2e-31 140.6 430 31.2
RcHm_v2.0_Chr2g0164301 Rosa chinensis HOM05D005170 ORTHO05D006985 3.4e-25 120.6 120 57.5
Hma1.2p1_2186F.1_g316390 Hydrangea macrophylla HOM05D005170 ORTHO05D006985 1.5e-20 105.1 88 65.9
AagrBONN_evm.TU.Sc2ySwM_344.2165 Anthoceros agrestis HOM05D005170 ORTHO05D006985 2.2e-19 101.3 302 31.1
CBR_g66794 Chara braunii HOM05D005170 ORTHO05D006985 2.2e-19 101.3 491 26.1
arahy.Tifrunner.gnm1.ann1.ASZ0YV Arachis hypogaea HOM05D005170 ORTHO05D006985 1.2e-14 85.5 106 49.1
RcHm_v2.0_Chr1g0364771 Rosa chinensis HOM05D000122 ORTHO05D011214 2.0e-12 78.2 165 38.2
RcHm_v2.0_Chr2g0164311 Rosa chinensis HOM05D005170 ORTHO05D006985 7.4e-12 76.3 86 53.5
arahy.Tifrunner.gnm1.ann1.134PWN Arachis hypogaea HOM05D005170 ORTHO05D006985 2.2e-11 74.7 146 38.4
arahy.Tifrunner.gnm1.ann1.SXY0US Arachis hypogaea HOM05D005170 ORTHO05D006985 4.8e-11 73.6 75 57.3
QL02p004126 Quercus lobata HOM05D000033 ORTHO05D003265 9.1e-10 69.3 38 97.4
arahy.Tifrunner.gnm1.ann1.KW7YJP Arachis hypogaea HOM05D005170 ORTHO05D006985 1.7e-08 65.1 181 33.7
arahy.Tifrunner.gnm1.ann1.X5BDW5 Arachis hypogaea HOM05D005170 ORTHO05D006985 3.2e-07 60.8 83 43.4


User provided reference genes

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