Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 2.5e-104 382.1 190 100.0
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 1.3e-97 359.8 190 92.6
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 2.3e-97 359.0 190 93.7
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 9.8e-93 343.6 193 89.1
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 4.9e-92 341.3 192 88.5
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 2.4e-91 339.0 192 87.5
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 4.1e-91 338.2 197 88.3
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 2.7e-90 335.5 193 86.5
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 3.5e-90 335.1 193 86.0
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 3.5e-90 335.1 192 87.5
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.0e-89 333.6 190 85.8
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.0e-89 333.6 193 87.6
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.0e-89 333.6 193 85.5
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.3e-89 332.4 197 87.3
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 3.9e-89 331.6 190 86.8
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 5.0e-89 331.3 193 85.5
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 5.0e-89 331.3 193 87.6
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.9e-88 329.3 189 85.7
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.5e-88 328.9 189 86.8
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.5e-88 328.9 197 83.8
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 4.3e-88 328.2 189 85.2
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 4.3e-88 328.2 197 82.7
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 2.1e-87 325.9 193 85.0
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.6e-87 325.1 195 83.6
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 4.7e-87 324.7 189 85.2
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 4.7e-87 324.7 198 83.3
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 6.1e-87 324.3 172 93.0
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.0e-87 323.9 191 84.8
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.0e-86 323.6 198 81.8
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.4e-86 323.2 190 82.1
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.4e-86 323.2 191 84.8
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 1.4e-86 323.2 192 82.8
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.8e-86 322.8 194 84.0
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.1e-86 322.0 200 79.5
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 6.8e-86 320.9 194 82.0
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.9e-86 320.5 199 80.4
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 8.9e-86 320.5 199 80.4
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-85 320.1 193 83.9
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 2.0e-85 319.3 196 80.6
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 4.4e-85 318.2 189 82.5
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 4.4e-85 318.2 192 82.3
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 4.4e-85 318.2 193 82.9
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 5.8e-85 317.8 190 80.5
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 7.5e-85 317.4 190 80.5
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 7.5e-85 317.4 192 81.8
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 7.5e-85 317.4 191 80.6
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 7.5e-85 317.4 190 82.6
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 9.8e-85 317.0 199 80.4
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 9.8e-85 317.0 199 80.4
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 9.8e-85 317.0 192 83.3
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.7e-84 316.2 197 78.7
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.7e-84 316.2 192 82.8
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.7e-84 316.2 192 82.8
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.7e-84 316.2 197 82.7
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 3.7e-84 315.1 193 80.8
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 3.7e-84 315.1 192 82.3
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 1.1e-83 313.5 193 79.8
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 1.4e-83 313.2 190 80.5
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.9e-83 312.8 195 80.5
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.4e-83 312.4 194 77.8
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 3.2e-83 312.0 212 75.0
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 3.2e-83 312.0 190 80.5
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.2e-83 312.0 199 77.9
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.1e-83 311.6 200 77.0
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 4.1e-83 311.6 190 82.6
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 7.0e-83 310.8 198 76.8
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 7.0e-83 310.8 191 80.1
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 9.2e-83 310.5 189 82.5
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 9.2e-83 310.5 200 80.0
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 9.2e-83 310.5 190 80.5
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 1.2e-82 310.1 193 80.8
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.2e-82 310.1 190 80.5
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.6e-82 309.7 198 77.3
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.0e-82 309.3 189 80.4
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 2.0e-82 309.3 197 79.7
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 2.0e-82 309.3 199 77.9
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.0e-82 309.3 199 76.4
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 2.7e-82 308.9 197 76.6
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 2.7e-82 308.9 190 79.5
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.7e-82 308.9 200 79.5
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.7e-82 308.9 191 81.2
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.7e-82 308.9 190 80.5
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.7e-82 308.9 195 80.0
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 3.5e-82 308.5 197 76.6
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 3.5e-82 308.5 191 78.5
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 3.5e-82 308.5 190 80.0
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 6.0e-82 307.8 189 81.0
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 7.8e-82 307.4 192 79.2
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 7.8e-82 307.4 204 77.9
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 7.8e-82 307.4 193 80.3
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 7.8e-82 307.4 200 77.5
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.3e-81 306.6 197 77.7
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.3e-81 305.8 201 74.6
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 2.3e-81 305.8 203 74.4
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 3.9e-81 305.1 193 80.3
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 5.0e-81 304.7 195 77.4
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 5.0e-81 304.7 195 77.4
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 8.6e-81 303.9 239 68.2
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.1e-80 303.5 194 76.3
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 1.1e-80 303.5 197 75.6
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 5.6e-80 301.2 197 75.6
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 9.5e-80 300.4 196 76.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 1.2e-79 300.1 197 75.6
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.2e-79 300.1 197 75.6
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 1.6e-79 299.7 195 74.4
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.6e-79 299.7 192 79.7
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.8e-79 298.9 205 74.6
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 2.8e-79 298.9 191 78.5
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 3.6e-79 298.5 197 75.1
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.6e-79 298.5 186 82.3
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 8.1e-79 297.4 201 75.1
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.8e-78 296.2 199 74.9
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 2.3e-78 295.8 199 74.9
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 6.8e-78 294.3 196 76.0
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 6.8e-78 294.3 197 76.1
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 1.5e-77 293.1 198 76.3
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.4e-77 292.0 174 84.5
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.4e-77 292.0 211 73.0
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.3e-76 290.0 180 80.0
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 3.7e-76 288.5 182 79.7
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 8.3e-76 287.3 197 74.6
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.1e-75 287.0 222 67.6
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 7.1e-75 284.3 200 74.0
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.0e-74 281.2 175 81.1
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.3e-73 280.0 212 69.8
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 3.9e-73 278.5 180 78.3
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 3.9e-73 278.5 191 73.8
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 8.6e-73 277.3 193 72.0
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.9e-72 276.2 193 68.4
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 7.3e-72 274.2 186 74.2
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 3.6e-71 271.9 192 68.2
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 1.1e-70 270.4 205 70.2
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 2.9e-68 262.3 213 65.7
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.9e-67 259.6 236 61.9
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.4e-67 258.1 180 68.9
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 6.0e-66 254.6 182 66.5
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 3.0e-65 252.3 182 70.3
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 1.1e-64 250.4 189 69.8
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 4.7e-63 245.0 190 67.9
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 4.7e-63 245.0 177 71.2
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.8e-62 243.0 175 66.3
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.2e-60 236.1 202 60.4
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 4.2e-59 231.9 199 61.8
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 1.8e-54 216.5 153 71.2
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 2.1e-50 203.0 115 89.6
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.5e-48 196.8 114 85.1
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 2.0e-45 186.4 174 58.0
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 2.1e-42 176.4 99 90.9
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 3.9e-41 172.2 98 89.8
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 9.6e-40 167.5 188 53.7
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.4e-38 163.7 98 85.7
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.5e-35 152.9 97 74.2
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.1e-30 137.5 190 47.4
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 1.8e-30 136.7 194 45.9
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.4e-29 132.5 69 94.2
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 7.6e-29 131.3 79 78.5
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.7e-28 130.2 114 64.0
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.5e-27 126.3 70 74.3
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 1.5e-24 117.1 192 38.0
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 2.4e-22 109.8 187 40.1
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 3.1e-22 109.4 98 65.3
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 2.0e-21 106.7 189 42.3
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 1.4e-19 100.5 189 41.8
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 7.9e-18 94.7 70 61.4
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.8e-17 93.6 71 69.0
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 4.3e-16 89.0 63 68.3
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 9.7e-16 87.8 54 68.5
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.4e-14 83.2 164 34.8
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 5.3e-14 82.0 56 75.0
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.2e-13 80.9 53 77.4
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 3.2e-11 72.8 60 61.7
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.9e-09 65.9 70 54.3
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 7.0e-06 55.1 57 56.1


User provided reference genes

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