Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 6.2e-305 1050.0 554 100.0
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 1.4e-243 846.3 566 77.6
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.4e-240 836.3 566 77.0
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 4.2e-237 824.7 563 76.2
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 5.2e-227 791.2 554 74.5
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 9.8e-226 786.9 567 72.3
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 1.0e-214 750.4 552 70.5
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.0e-214 750.4 523 75.0
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 1.0e-214 750.4 436 83.9
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 2.3e-214 749.2 507 74.2
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 3.8e-214 748.4 552 71.4
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 5.0e-214 748.0 559 70.8
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.1e-213 746.9 557 69.1
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 1.1e-213 746.9 562 69.6
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 3.3e-213 745.3 555 69.5
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 9.5e-213 743.8 558 69.4
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 2.1e-212 742.7 516 72.3
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 1.4e-211 740.0 567 69.0
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 1.8e-211 739.6 519 72.1
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 8.9e-211 737.3 554 70.4
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 5.8e-210 734.6 428 82.2
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 7.5e-210 734.2 515 73.2
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 2.9e-209 732.3 556 69.6
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 6.4e-209 731.1 519 73.0
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 1.1e-208 730.3 553 70.2
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 5.4e-208 728.0 558 68.5
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 7.0e-208 727.6 518 71.2
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 1.2e-207 726.9 517 72.1
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 2.7e-207 725.7 553 68.9
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 4.6e-207 724.9 557 70.4
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 6.0e-207 724.5 552 68.7
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.3e-206 723.4 563 69.1
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 1.7e-206 723.0 517 72.3
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 3.9e-206 721.8 558 69.4
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 8.6e-206 720.7 558 67.9
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.5e-205 719.9 435 80.0
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 2.1e-204 716.1 517 71.6
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 8.0e-204 714.1 552 67.6
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.4e-203 713.4 554 69.0
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 4.0e-203 711.8 558 67.7
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 1.5e-202 709.9 436 78.2
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 3.4e-202 708.8 520 70.0
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 3.4e-202 708.8 438 80.1
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 4.4e-202 708.4 556 66.9
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 9.8e-202 707.2 560 66.8
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 2.9e-201 705.7 555 67.2
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 2.9e-201 705.7 446 76.5
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.9e-201 705.7 505 71.7
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 3.2e-200 702.2 428 79.7
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 5.4e-200 701.4 510 68.2
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 7.0e-200 701.0 428 79.7
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 2.7e-199 699.1 532 70.1
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 6.0e-199 698.0 424 78.5
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.7e-198 696.4 428 79.2
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 2.3e-198 696.0 432 79.2
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 5.1e-198 694.9 447 76.1
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.5e-197 693.3 496 71.6
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 4.3e-197 691.8 430 79.1
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 4.3e-197 691.8 430 77.2
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.2e-196 690.3 521 70.4
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 4.7e-196 688.3 430 77.2
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 2.3e-195 686.0 504 70.8
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 2.3e-195 686.0 434 77.4
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 8.9e-195 684.1 513 68.8
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 1.2e-194 683.7 516 69.4
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.6e-194 682.6 517 66.5
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 2.6e-194 682.6 430 75.8
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 2.6e-194 682.6 552 64.3
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 4.4e-194 681.8 441 75.7
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 4.4e-194 681.8 441 75.7
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 4.4e-194 681.8 441 75.7
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 5.8e-194 681.4 425 77.9
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.3e-193 680.2 429 78.1
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 1.3e-193 680.2 493 70.2
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 1.3e-193 680.2 493 70.2
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 1.3e-193 680.2 493 70.2
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 1.3e-193 680.2 493 70.2
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 1.7e-193 679.9 500 69.8
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 1.7e-193 679.9 500 69.8
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 2.2e-193 679.5 509 69.5
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.2e-193 679.5 436 74.8
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 3.7e-193 678.7 520 69.0
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 6.4e-193 677.9 507 69.2
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 1.4e-192 676.8 522 69.5
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 1.4e-192 676.8 521 69.9
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 5.4e-192 674.9 551 64.4
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 9.2e-192 674.1 437 73.5
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.2e-191 673.7 506 67.8
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 1.6e-191 673.3 429 76.5
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 1.6e-191 673.3 430 75.8
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 1.6e-191 673.3 506 68.0
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.1e-191 672.9 552 65.8
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.9e-190 668.7 557 65.7
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 8.6e-190 667.5 557 65.7
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.1e-189 667.2 430 76.7
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 3.3e-189 665.6 430 76.3
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 7.3e-189 664.5 522 65.7
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.6e-188 663.3 426 75.4
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 3.1e-187 659.1 520 65.0
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.0e-187 658.7 532 67.5
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.2e-187 658.3 598 60.2
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.8e-187 657.9 557 65.7
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 4.9e-185 651.7 428 72.7
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 1.6e-183 646.7 425 76.7
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 1.6e-183 646.7 521 66.4
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.0e-182 644.0 555 62.7
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 6.2e-180 634.8 407 76.7
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 2.4e-179 632.9 444 71.4
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 1.3e-177 627.1 513 63.2
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 1.3e-174 617.1 482 66.8
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 1.7e-174 616.7 431 68.0
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 1.3e-169 600.5 528 61.9
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 1.7e-169 600.1 450 69.6
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 2.4e-168 596.3 551 59.3
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 7.1e-168 594.7 376 74.2
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 1.6e-167 593.6 649 55.5
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 6.7e-166 588.2 431 65.4
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 1.1e-165 587.4 361 80.3
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 1.5e-165 587.0 564 59.8
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 3.7e-164 582.4 514 57.4
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 4.0e-163 578.9 574 57.7
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 7.6e-162 574.7 428 63.6
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 2.9e-161 572.8 484 63.8
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 1.1e-160 570.9 555 57.8
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.9e-160 570.1 414 69.6
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.2e-160 568.9 436 63.5
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 6.0e-159 565.1 518 57.9
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.3e-158 563.9 407 67.3
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 3.7e-156 555.8 423 64.3
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 5.8e-154 548.5 418 64.6
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 9.3e-152 541.2 431 68.4
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 2.3e-150 536.6 368 72.8
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 6.9e-147 525.0 374 69.8
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.5e-146 523.9 383 69.5
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 3.4e-146 522.7 464 61.6
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 3.6e-143 512.7 441 66.0
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 7.9e-143 511.5 390 68.7
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.3e-141 506.1 416 63.0
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 3.3e-141 506.1 316 77.8
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 9.7e-141 504.6 366 67.5
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.5e-138 497.3 410 60.7
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 4.5e-138 495.7 448 60.7
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 3.8e-137 492.7 383 67.9
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 4.2e-136 489.2 405 64.0
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 6.7e-126 455.3 413 62.5
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.2e-124 450.3 378 63.2
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 5.0e-121 439.1 354 61.6
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 8.0e-119 431.8 284 75.7
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.5e-101 374.4 216 82.4
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.9e-91 340.9 440 43.0
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 8.1e-79 298.9 293 58.7
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 1.1e-75 288.5 292 63.0
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 6.0e-74 282.7 153 85.0
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 3.0e-73 280.4 264 59.8
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 2.8e-71 273.9 237 65.0
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 5.4e-67 259.6 155 80.6
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.5e-64 250.8 176 73.3
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 3.6e-63 246.9 199 58.3
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 2.1e-58 231.1 172 59.3
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 3.9e-57 226.9 213 61.0
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 1.5e-56 224.9 412 34.0
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.1e-50 204.5 460 32.0
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 4.5e-45 186.8 102 81.4
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 8.5e-20 102.8 49 91.8
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 1.1e-19 102.4 50 92.0
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 1.9e-19 101.7 51 92.2
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 7.9e-18 96.3 219 31.5
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 1.8e-17 95.1 122 50.8
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 2.6e-16 91.3 183 33.3
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 3.6e-10 70.9 106 40.6
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.0e-09 69.3 63 47.6
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.1e-08 65.9 39 76.9
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 1.1e-08 65.9 42 71.4
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 5.7e-08 63.5 40 72.5


User provided reference genes

Program Settings