Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p059474 Quercus lobata HOM05D002544 ORTHO05D007856 2.0e-57 225.7 125 100.0
QL03p020295 Quercus lobata HOM05D002544 ORTHO05D007856 1.6e-14 83.2 64 67.2
Gohir.D05G289100 Gossypium hirsutum HOM05D002544 ORTHO05D007856 4.7e-11 71.6 38 81.6
Gorai.009G304200 Gossypium raimondii HOM05D002544 ORTHO05D007856 4.7e-11 71.6 38 81.6
Haze_14286 Corylus avellana HOM05D002544 ORTHO05D007856 1.1e-10 70.5 38 84.2
Lalb_Chr18g0053551 Lupinus albus HOM05D002544 ORTHO05D007856 1.4e-10 70.1 38 78.9
vmacro20587 Vaccinium macrocarpon HOM05D002544 ORTHO05D007856 1.4e-10 70.1 38 81.6
arahy.Tifrunner.gnm1.ann1.5E142I Arachis hypogaea HOM05D002544 ORTHO05D007856 2.3e-10 69.3 38 78.9
arahy.Tifrunner.gnm1.ann1.644H52 Arachis hypogaea HOM05D002544 ORTHO05D007856 2.3e-10 69.3 38 78.9
AUR62037665 Chenopodium quinoa HOM05D002544 ORTHO05D007856 2.3e-10 69.3 38 76.3
Gohir.A05G287900 Gossypium hirsutum HOM05D002544 ORTHO05D007856 2.3e-10 69.3 38 78.9
Psat5g119600 Pisum sativum HOM05D002544 ORTHO05D007856 2.3e-10 69.3 38 81.6
Cc07_g13200 Coffea canephora HOM05D002544 ORTHO05D007856 3.1e-10 68.9 38 76.3
EL10Ac2g03312 Beta vulgaris HOM05D002544 ORTHO05D007856 4.0e-10 68.6 38 73.7
Ciclev10000514m.g Citrus clementina HOM05D002544 ORTHO05D007856 4.0e-10 68.6 38 76.3
COL.COLO4_38545 Corchorus olitorius HOM05D002544 ORTHO05D007856 4.0e-10 68.6 35 82.9
Eucgr.F02879 Eucalyptus grandis HOM05D002544 ORTHO05D007856 4.0e-10 68.6 38 76.3
Dinv19050 Davidia involucrata HOM05D002544 ORTHO05D007856 5.2e-10 68.2 35 85.7
AUR62040737 Chenopodium quinoa HOM05D002544 ORTHO05D007856 6.8e-10 67.8 38 76.3
Hma1.2p1_0158F.1_g070010 Hydrangea macrophylla HOM05D002544 ORTHO05D007856 6.8e-10 67.8 35 82.9
Lj6g0017134 Lotus japonicus HOM05D002544 ORTHO05D007856 6.8e-10 67.8 38 78.9
Duzib128G1814 Durio zibethinus HOM05D002544 ORTHO05D007856 8.9e-10 67.4 38 76.3
Manes.02G078600 Manihot esculenta HOM05D002544 ORTHO05D007856 8.9e-10 67.4 36 77.8
TWI53G0412 Tripterygium wilfordii HOM05D002544 ORTHO05D007856 8.9e-10 67.4 38 78.9
Cfa007785 Carpinus fangiana HOM05D002544 ORTHO05D007856 1.5e-09 66.6 33 87.9
CiPaw.03G074200 Carya illinoinensis HOM05D002544 ORTHO05D007856 1.5e-09 66.6 33 90.9
PGR004G1819 Punica granatum HOM05D002544 ORTHO05D007856 1.5e-09 66.6 38 76.3
FvH4_1g30060 Fragaria vesca HOM05D002544 ORTHO05D007856 2.0e-09 66.2 38 73.7
FAN26G1528 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.0e-09 66.2 38 73.7
Glyma.11G214700 Glycine max HOM05D002544 ORTHO05D007856 2.0e-09 66.2 38 76.3
Glyma.18G041900 Glycine max HOM05D002544 ORTHO05D007856 2.0e-09 66.2 38 76.3
THA.LOC104805637 Tarenaya hassleriana HOM05D002544 ORTHO05D007856 2.0e-09 66.2 37 75.7
TPR.G23205 Trifolium pratense HOM05D002544 ORTHO05D007856 2.0e-09 66.2 38 76.3
FAN28G1090 Fragaria x ananassa HOM05D002544 ORTHO05D007856 2.6e-09 65.9 38 73.7
RcHm_v2.0_Chr3g0492061 Rosa chinensis HOM05D002544 ORTHO05D007856 2.6e-09 65.9 38 76.3
Solyc11g011480.2 Solanum lycopersicum HOM05D002544 ORTHO05D007856 2.6e-09 65.9 35 82.9
Sopen11g006270 Solanum pennellii HOM05D002544 ORTHO05D007856 2.6e-09 65.9 35 82.9
CSS0008925 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 3.4e-09 65.5 37 75.7
CSS0046327 Camellia sinensis var. sinensis HOM05D002544 ORTHO05D007856 3.4e-09 65.5 37 75.7
Lj4A258G27 Lonicera japonica HOM05D002544 ORTHO05D007856 3.4e-09 65.5 36 77.8
Oeu030291.2 Olea europaea HOM05D002544 ORTHO05D007856 3.4e-09 65.5 38 73.7
GSVIVG01030701001 Vitis vinifera HOM05D002544 ORTHO05D007856 3.4e-09 65.5 34 82.4
Actinidia06481 Actinidia chinensis HOM05D002544 ORTHO05D007856 4.4e-09 65.1 35 82.9
ATR0118G015 Amborella trichopoda HOM05D002544 ORTHO05D007856 4.4e-09 65.1 38 73.7
HanXRQChr16g0532811 Helianthus annuus HOM05D002544 ORTHO05D007856 4.4e-09 65.1 34 82.4
MD17G1267200 Malus domestica HOM05D002544 ORTHO05D007856 4.4e-09 65.1 38 73.7
Phvul.001G228700 Phaseolus vulgaris HOM05D002544 ORTHO05D007856 4.4e-09 65.1 38 76.3
Sed0025118 Sechium edule HOM05D002544 ORTHO05D007856 4.4e-09 65.1 37 75.7
Ah.10g032440 Amaranthus hybridus HOM05D002544 ORTHO05D007856 5.8e-09 64.7 38 71.1
Nitab4.5_0011135g0020 Nicotiana tabacum HOM05D002544 ORTHO05D007856 5.8e-09 64.7 35 80.0
Sp5g09650 Schrenkiella parvula HOM05D002544 ORTHO05D007856 5.8e-09 64.7 38 73.7
Sc04g0005080 Simmondsia chinensis HOM05D002544 ORTHO05D007856 5.8e-09 64.7 38 71.1
HPP92_021314 Vanilla planifolia HOM05D002544 ORTHO05D007856 5.8e-09 64.7 38 65.8
HPP92_026942 Vanilla planifolia HOM05D002544 ORTHO05D007856 5.8e-09 64.7 38 65.8
VMungo1383G1931 Vigna mungo HOM05D002544 ORTHO05D007856 5.8e-09 64.7 38 76.3
BcaB02g08559 Brassica carinata HOM05D002544 ORTHO05D007856 7.5e-09 64.3 38 73.7
BcaC02g09234 Brassica carinata HOM05D002544 ORTHO05D007856 7.5e-09 64.3 38 73.7
C04p40360 Brassica napus HOM05D002544 ORTHO05D007856 7.5e-09 64.3 38 73.7
BolC4t25616H Brassica oleracea HOM05D002544 ORTHO05D007856 7.5e-09 64.3 38 73.7
Carub.0005s1906 Capsella rubella HOM05D002544 ORTHO05D007856 7.5e-09 64.3 38 73.7
Peaxi162Scf00464g00433 Petunia axillaris HOM05D002544 ORTHO05D007856 7.5e-09 64.3 35 80.0
Rhsim10G0180300 Rhododendron simsii HOM05D002544 ORTHO05D007856 7.5e-09 64.3 34 79.4
Atru.chr1.2033 Acer truncatum HOM05D002544 ORTHO05D007856 9.9e-09 63.9 34 82.4
CAN.G222.63 Capsicum annuum HOM05D002544 ORTHO05D007856 9.9e-09 63.9 35 80.0
CsaV3_3G017820 Cucumis sativus L. HOM05D002544 ORTHO05D007856 9.9e-09 63.9 37 73.0
MBI13_g24909_MAGBIO Magnolia biondii HOM05D002544 ORTHO05D007856 9.9e-09 63.9 50 62.0
TAR622G0658 Trochodendron aralioides HOM05D002544 ORTHO05D007856 1.3e-08 63.5 38 71.1
A04p06810 Brassica napus HOM05D002544 ORTHO05D007856 1.7e-08 63.2 38 71.1
BraA04t16380Z Brassica rapa HOM05D002544 ORTHO05D007856 1.7e-08 63.2 38 71.1
Migut.K00933 Erythranthe guttata HOM05D002544 ORTHO05D007856 1.7e-08 63.2 38 71.1
Medtr3g065110 Medicago truncatula HOM05D002544 ORTHO05D007856 1.7e-08 63.2 36 77.8
Sabra04G0055200 Salix brachista HOM05D002544 ORTHO05D007856 1.7e-08 63.2 63 71.4
CARHR162470 Cardamine hirsuta HOM05D002544 ORTHO05D007856 2.2e-08 62.8 38 71.1
Nn3g18419 Nelumbo nucifera HOM05D002544 ORTHO05D007856 2.2e-08 62.8 38 71.1
unitig_748.g8462 Utricularia gibba HOM05D002544 ORTHO05D007856 2.2e-08 62.8 54 57.4
Cpa.g.sc116.76 Carica papaya HOM05D002544 ORTHO05D007856 2.9e-08 62.4 35 80.0
Lsat_1_v5_gn_3_63981 Lactuca sativa HOM05D002544 ORTHO05D007856 2.9e-08 62.4 34 76.5
Potri.004G082900 Populus trichocarpa HOM05D002544 ORTHO05D007856 2.9e-08 62.4 35 80.0
Aa31LG10G7700 Aethionema arabicum HOM05D002544 ORTHO05D007856 3.7e-08 62.0 37 73.0
AL5G33420 Arabidopsis lyrata HOM05D002544 ORTHO05D007856 3.7e-08 62.0 34 79.4
Prupe.3G165300 Prunus persica HOM05D002544 ORTHO05D007856 3.7e-08 62.0 33 81.8
Actinidia17196 Actinidia chinensis HOM05D002544 ORTHO05D007856 4.9e-08 61.6 35 77.1
CANSAT25G3407 Cannabis sativa HOM05D002544 ORTHO05D007856 6.4e-08 61.2 37 73.0
AT3G52640 Arabidopsis thaliana HOM05D002544 ORTHO05D007856 1.1e-07 60.5 34 76.5
PSO063G6024 Papaver somniferum HOM05D002544 ORTHO05D007856 1.4e-07 60.1 35 68.6
PSO782G4267 Papaver somniferum HOM05D002544 ORTHO05D007856 1.4e-07 60.1 35 68.6
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 1.9e-07 59.7 34 73.5
CBR_g37928 Chara braunii HOM05D000601 ORTHO05D000301 4.1e-07 58.5 38 65.8
ClCG05G010690 Citrullus lanatus HOM05D002544 ORTHO05D007856 4.1e-07 58.5 32 75.0
CDE05G1209 Ceratophyllum demersum HOM05D002544 ORTHO05D007856 9.2e-07 57.4 38 63.2
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.2e-06 57.0 38 63.2
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 1.2e-06 57.0 38 63.2
Aqoxy3G04067 Aquilegia oxysepala HOM05D002544 ORTHO05D007856 1.6e-06 56.6 34 64.7
Ca_17085_v3 Cicer arietinum L. HOM05D002544 ORTHO05D007856 1.6e-06 56.6 33 72.7
Lj4C412G0 Lonicera japonica HOM05D002544 ORTHO05D007856 1.6e-06 56.6 36 66.7
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 4.6e-06 55.1 38 60.5


User provided reference genes

Program Settings