Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 2.8e-81 305.1 140 100.0
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.0e-78 296.6 140 97.1
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 5.4e-72 274.2 137 89.1
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.5e-71 271.6 137 88.3
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.6e-71 271.2 137 87.6
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 3.0e-70 268.5 137 88.3
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.6e-68 262.7 137 86.1
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.1e-68 262.3 137 86.1
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.8e-66 254.2 135 80.7
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 1.1e-64 250.0 134 79.9
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.9e-64 249.2 134 80.6
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 2.4e-64 248.8 134 79.9
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 2.4e-64 248.8 140 77.1
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 2.4e-64 248.8 134 80.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.2e-64 248.4 134 80.6
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 5.4e-64 247.7 140 77.9
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 5.4e-64 247.7 134 79.9
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 7.0e-64 247.3 135 79.3
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 7.0e-64 247.3 137 77.4
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 9.2e-64 246.9 135 76.3
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.6e-63 246.1 134 79.9
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.6e-63 246.1 134 79.1
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 1.6e-63 246.1 134 79.1
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 2.7e-63 245.4 134 77.6
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 3.5e-63 245.0 136 76.5
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 3.5e-63 245.0 136 75.0
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 4.6e-63 244.6 134 78.4
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 4.6e-63 244.6 134 76.9
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 6.0e-63 244.2 137 75.2
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 7.8e-63 243.8 133 75.9
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.3e-62 243.0 134 77.6
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.3e-62 242.3 134 78.4
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 2.3e-62 242.3 134 76.9
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.0e-62 241.9 133 78.2
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 3.0e-62 241.9 134 75.4
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 3.9e-62 241.5 136 74.3
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 3.9e-62 241.5 134 77.6
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 3.9e-62 241.5 134 77.6
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.9e-62 241.5 136 75.7
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 3.9e-62 241.5 134 76.1
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 6.6e-62 240.7 134 76.9
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 8.6e-62 240.4 136 74.3
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 1.1e-61 240.0 134 76.1
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 1.5e-61 239.6 137 73.7
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.5e-61 239.6 134 76.1
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.5e-61 239.6 134 78.4
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 2.5e-61 238.8 137 75.2
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.5e-61 238.8 134 74.6
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 5.6e-61 237.7 134 73.9
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 5.6e-61 237.7 123 81.3
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 5.6e-61 237.7 134 75.4
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 7.3e-61 237.3 134 75.4
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 7.3e-61 237.3 134 73.9
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.3e-61 237.3 134 73.9
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 9.5e-61 236.9 134 76.9
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.2e-60 236.5 136 71.3
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.2e-60 236.5 138 73.2
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.2e-60 236.5 136 74.3
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 2.1e-60 235.7 129 78.3
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.1e-60 235.7 134 75.4
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 2.1e-60 235.7 134 76.1
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 2.8e-60 235.3 136 73.5
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 3.6e-60 235.0 134 73.9
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 4.7e-60 234.6 134 77.6
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 6.2e-60 234.2 139 72.7
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 8.1e-60 233.8 136 72.1
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.1e-60 233.8 135 75.6
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.8e-59 232.6 134 71.6
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.3e-59 232.3 136 72.1
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.0e-59 231.5 134 71.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.9e-59 230.3 138 70.3
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 8.9e-59 230.3 134 73.9
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.2e-58 229.9 130 73.8
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.0e-58 229.2 134 73.1
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 3.4e-58 228.4 134 73.1
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 4.4e-58 228.0 134 71.6
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 5.8e-58 227.6 135 74.8
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.5e-58 227.3 121 76.9
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 7.5e-58 227.3 133 72.9
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 9.8e-58 226.9 121 81.8
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 68.7
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 2.9e-57 225.3 134 70.9
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 4.9e-57 224.6 135 72.6
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 8.3e-57 223.8 118 77.1
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.3e-57 223.8 135 74.1
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 8.3e-57 223.8 134 70.1
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.4e-56 223.0 134 71.6
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.9e-56 222.6 136 73.5
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 2.4e-56 222.2 134 69.4
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 4.1e-56 221.5 134 70.9
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 4.1e-56 221.5 136 69.9
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 9.2e-56 220.3 134 68.7
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.7e-55 218.8 121 75.2
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 2.7e-55 218.8 129 72.1
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 2.7e-55 218.8 131 71.8
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 4.6e-55 218.0 133 70.7
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 4.6e-55 218.0 134 68.7
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 6.0e-55 217.6 134 67.9
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 7.8e-55 217.2 133 67.7
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 7.8e-55 217.2 123 75.6
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 1.0e-54 216.9 134 67.9
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.3e-54 216.5 134 68.7
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.3e-54 216.5 134 68.7
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 3.0e-54 215.3 134 69.4
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 8.6e-54 213.8 136 66.9
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.5e-53 213.0 134 66.4
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.5e-53 213.0 120 78.3
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.9e-53 212.6 133 68.4
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 7.3e-53 210.7 133 67.7
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.2e-52 209.9 123 72.4
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 2.8e-52 208.8 173 57.2
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.6e-52 208.4 124 71.8
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.6e-52 208.4 123 67.5
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 4.7e-52 208.0 129 67.4
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 8.1e-52 207.2 133 66.9
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.1e-51 206.8 138 63.0
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.1e-51 206.8 121 74.4
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 1.8e-51 206.1 131 65.6
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 6.8e-51 204.1 118 68.6
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.2e-50 203.4 129 65.1
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.6e-50 202.2 129 64.3
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 2.2e-49 199.1 136 63.2
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 3.8e-49 198.4 116 68.1
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 7.1e-48 194.1 134 64.2
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 9.2e-48 193.7 131 62.6
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.6e-47 193.0 132 62.1
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.7e-47 192.2 132 61.4
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.3e-46 189.1 134 59.0
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 5.1e-46 188.0 130 61.5
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 5.1e-46 188.0 106 73.6
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 8.6e-46 187.2 132 61.4
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.1e-45 186.8 134 62.7
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 4.3e-45 184.9 137 62.8
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 9.6e-45 183.7 132 59.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.6e-44 183.0 100 76.0
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 3.5e-39 165.2 100 72.0
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.0e-38 162.2 122 59.0
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.5e-37 159.8 116 59.5
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 2.5e-37 159.1 102 72.5
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.3e-36 156.8 123 56.1
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 1.8e-35 152.9 102 70.6
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 6.9e-35 151.0 85 75.3
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 5.4e-32 141.4 141 45.4
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 6.7e-30 134.4 75 78.7
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 8.1e-28 127.5 74 78.4
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.0e-26 122.9 112 51.8
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.7e-25 119.8 69 73.9
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.9e-23 110.9 63 74.6
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.3e-22 110.2 78 60.3
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 8.1e-20 100.9 80 55.0


User provided reference genes

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