Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 4.4e-82 307.8 140 100.0
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.0e-78 296.6 140 97.1
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.3e-73 279.6 137 91.2
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.7e-73 279.3 137 89.8
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.9e-73 277.7 137 89.8
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.2e-72 275.0 137 89.1
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 5.9e-71 270.8 137 88.3
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 7.8e-71 270.4 137 88.3
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.6e-68 261.5 135 82.2
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 5.2e-67 257.7 135 81.5
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 6.8e-67 257.3 134 82.8
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 8.9e-67 256.9 140 79.3
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.5e-66 256.1 140 79.3
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 2.0e-66 255.8 134 82.1
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 2.6e-66 255.4 134 80.6
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 3.4e-66 255.0 135 78.5
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 5.8e-66 254.2 134 82.1
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 5.8e-66 254.2 134 81.3
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 5.8e-66 254.2 134 81.3
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 7.5e-66 253.8 134 82.1
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 9.8e-66 253.4 137 78.8
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 1.3e-65 253.1 136 78.7
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.7e-65 252.7 134 79.1
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 2.9e-65 251.9 133 78.2
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 6.4e-65 250.8 134 79.1
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 8.3e-65 250.4 134 80.6
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 1.1e-64 250.0 133 80.5
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 1.4e-64 249.6 136 77.9
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.9e-64 249.2 134 79.9
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.9e-64 249.2 134 79.9
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 2.4e-64 248.8 134 79.1
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.4e-64 248.8 134 79.1
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 4.1e-64 248.1 134 76.9
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 7.0e-64 247.3 137 75.9
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 9.2e-64 246.9 129 81.4
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 9.2e-64 246.9 134 79.1
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 9.2e-64 246.9 134 79.9
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.6e-63 246.1 134 78.4
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 1.6e-63 246.1 137 76.6
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.6e-63 246.1 134 79.9
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 2.0e-63 245.7 136 75.0
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 2.7e-63 245.4 134 77.6
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 3.5e-63 245.0 137 74.5
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.5e-63 245.0 134 76.1
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 3.5e-63 245.0 134 79.1
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 4.6e-63 244.6 134 76.9
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 7.8e-63 243.8 134 76.9
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 7.8e-63 243.8 138 74.6
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.0e-62 243.4 136 75.7
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.0e-62 243.4 134 77.6
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.3e-62 243.0 134 74.6
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.3e-62 243.0 127 80.3
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 1.3e-62 243.0 134 76.9
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.3e-62 243.0 134 76.1
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 1.7e-62 242.7 134 79.9
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.7e-62 242.7 134 76.9
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.7e-62 242.7 136 75.7
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 3.0e-62 241.9 136 75.0
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 3.9e-62 241.5 136 72.8
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 8.6e-62 240.4 134 76.1
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 8.6e-62 240.4 134 74.6
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.6e-62 240.4 134 74.6
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 1.5e-61 239.6 134 76.1
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.5e-61 239.6 139 74.1
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.5e-61 239.6 135 77.0
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.5e-61 238.8 134 76.1
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 3.3e-61 238.4 136 73.5
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 4.3e-61 238.0 135 77.0
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-60 236.5 136 73.5
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 1.6e-60 236.1 134 73.9
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 2.1e-60 235.7 130 75.4
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.6e-60 235.0 134 72.4
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 4.7e-60 234.6 136 72.1
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.1e-59 233.4 134 73.9
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.1e-59 233.4 134 73.1
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 1.1e-59 233.4 134 74.6
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.4e-59 233.0 136 75.7
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 1.8e-59 232.6 134 71.6
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-59 232.6 138 71.0
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.3e-59 232.3 134 73.9
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 3.1e-59 231.9 134 73.1
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.1e-59 231.9 133 73.7
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.2e-59 231.1 134 71.6
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 6.8e-59 230.7 134 70.9
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 6.8e-59 230.7 134 69.4
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-58 229.9 121 77.7
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.5e-58 229.6 121 82.6
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.5e-58 229.6 136 72.1
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 2.6e-58 228.8 134 71.6
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 3.4e-58 228.4 134 70.9
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 4.4e-58 228.0 124 77.4
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 4.4e-58 228.0 129 74.4
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 9.8e-58 226.9 134 70.9
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 9.8e-58 226.9 134 70.9
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 9.8e-58 226.9 119 77.3
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.7e-57 226.1 131 73.3
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 2.2e-57 225.7 134 71.6
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.2e-57 225.7 135 74.1
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 4.9e-57 224.6 134 70.1
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 8.3e-57 223.8 134 70.1
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.4e-56 223.0 133 70.7
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 4.1e-56 221.5 134 67.9
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 4.1e-56 221.5 133 71.4
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 4.1e-56 221.5 121 76.0
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 5.4e-56 221.1 133 69.9
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 7.1e-56 220.7 128 74.2
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 9.2e-56 220.3 120 80.0
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 3.5e-55 218.4 133 67.7
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 6.0e-55 217.6 133 69.2
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.0e-54 216.9 173 59.0
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.7e-54 216.1 136 67.6
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 3.9e-54 214.9 138 65.2
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 5.1e-54 214.5 124 72.6
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 6.6e-54 214.2 124 68.5
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 3.3e-53 211.8 131 66.4
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.2e-52 209.9 129 66.7
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.6e-52 209.5 119 69.7
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.6e-52 209.5 123 72.4
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.6e-52 209.5 121 75.2
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.8e-52 208.8 129 65.9
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 4.0e-51 204.9 129 66.7
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 4.4e-50 201.4 136 64.0
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 5.8e-50 201.1 116 69.0
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 7.6e-50 200.7 132 63.6
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 9.9e-50 200.3 134 65.7
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 8.4e-49 197.2 131 63.4
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.2e-48 195.3 134 60.4
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 4.1e-48 194.9 132 62.9
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.2e-48 193.7 134 64.2
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 4.6e-47 191.4 130 62.3
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 5.1e-46 188.0 106 73.6
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.3e-45 185.3 132 61.4
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.6e-44 183.0 100 76.0
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.6e-44 181.8 132 59.8
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 6.2e-44 181.0 137 62.0
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 2.2e-41 172.6 100 74.0
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.2e-40 168.7 128 58.6
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.5e-39 165.2 125 59.2
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 3.5e-39 165.2 102 74.5
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.3e-38 162.5 132 56.1
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 5.1e-38 161.4 102 72.5
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 5.3e-35 151.4 85 75.3
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 4.5e-34 148.3 141 47.5
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.4e-32 142.5 75 82.7
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.3e-28 130.2 74 79.7
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.5e-26 123.2 112 51.8
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.0e-26 122.9 69 75.4
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.7e-23 112.5 78 61.5
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.9e-23 110.9 63 74.6
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.1e-19 100.5 80 55.0


User provided reference genes

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