Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 2.9e-79 298.5 150 100.0
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 2.5e-35 152.5 101 83.2
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 5.3e-17 91.7 95 54.7
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 9.0e-17 90.9 58 74.1
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 5.9e-16 88.2 51 82.4
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 5.9e-16 88.2 51 84.3
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 7.6e-16 87.8 51 80.4
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 7.6e-16 87.8 51 80.4
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 7.6e-16 87.8 51 80.4
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 1.0e-15 87.4 51 82.4
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 1.0e-15 87.4 51 80.4
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 1.3e-15 87.0 51 78.4
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 1.3e-15 87.0 51 80.4
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 1.7e-15 86.7 51 80.4
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 2.2e-15 86.3 51 76.5
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 2.9e-15 85.9 94 54.3
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 2.9e-15 85.9 51 78.4
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 2.9e-15 85.9 51 80.4
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 2.9e-15 85.9 51 76.5
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 3.8e-15 85.5 51 78.4
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 5.0e-15 85.1 51 74.5
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 6.5e-15 84.7 51 78.4
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 8.5e-15 84.3 51 78.4
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 8.5e-15 84.3 51 78.4
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 8.5e-15 84.3 51 76.5
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 8.5e-15 84.3 51 76.5
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 1.4e-14 83.6 51 76.5
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 1.4e-14 83.6 51 74.5
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 1.4e-14 83.6 51 74.5
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 1.9e-14 83.2 51 78.4
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.9e-14 83.2 51 76.5
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 1.9e-14 83.2 51 74.5
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 1.9e-14 83.2 51 76.5
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.9e-14 83.2 51 74.5
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 1.9e-14 83.2 51 74.5
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 2.5e-14 82.8 71 59.2
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.5e-14 82.8 51 76.5
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.5e-14 82.8 51 76.5
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.5e-14 82.8 51 76.5
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 2.5e-14 82.8 51 76.5
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 2.5e-14 82.8 51 76.5
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 2.5e-14 82.8 51 74.5
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 2.5e-14 82.8 51 76.5
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 3.2e-14 82.4 51 74.5
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 3.2e-14 82.4 51 74.5
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 4.2e-14 82.0 51 72.5
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 4.2e-14 82.0 51 76.5
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 4.2e-14 82.0 51 76.5
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 5.5e-14 81.6 51 76.5
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 5.5e-14 81.6 51 78.4
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 5.5e-14 81.6 51 72.5
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 5.5e-14 81.6 51 74.5
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 7.2e-14 81.3 51 72.5
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 7.2e-14 81.3 51 72.5
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 7.2e-14 81.3 51 72.5
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 9.3e-14 80.9 51 74.5
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 9.3e-14 80.9 51 72.5
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 1.2e-13 80.5 51 74.5
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 1.2e-13 80.5 51 72.5
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 1.2e-13 80.5 51 70.6
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 1.2e-13 80.5 51 72.5
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.6e-13 80.1 51 74.5
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.6e-13 80.1 51 74.5
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 1.6e-13 80.1 51 72.5
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 2.1e-13 79.7 51 70.6
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.1e-13 79.7 51 74.5
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.1e-13 79.7 51 74.5
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 2.1e-13 79.7 51 74.5
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 2.1e-13 79.7 51 70.6
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 2.7e-13 79.3 51 70.6
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 2.7e-13 79.3 51 72.5
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 3.6e-13 79.0 51 72.5
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 3.6e-13 79.0 51 72.5
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 3.6e-13 79.0 51 72.5
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 4.6e-13 78.6 51 72.5
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 4.6e-13 78.6 51 72.5
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 6.1e-13 78.2 51 70.6
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 6.1e-13 78.2 146 42.5
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 6.1e-13 78.2 51 70.6
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 6.1e-13 78.2 51 72.5
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 7.9e-13 77.8 51 70.6
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 7.9e-13 77.8 51 68.6
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 7.9e-13 77.8 51 72.5
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 1.0e-12 77.4 51 70.6
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 1.0e-12 77.4 51 70.6
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.4e-12 77.0 47 76.6
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 1.8e-12 76.6 51 70.6
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 2.3e-12 76.3 51 70.6
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 2.3e-12 76.3 51 66.7
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 2.3e-12 76.3 51 72.5
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 3.0e-12 75.9 51 70.6
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 3.9e-12 75.5 51 66.7
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 6.7e-12 74.7 51 70.6
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 1.1e-11 73.9 51 66.7
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 1.1e-11 73.9 51 68.6
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 1.5e-11 73.6 51 64.7
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 3.3e-11 72.4 51 68.6
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 1.3e-10 70.5 51 68.6
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 1.7e-10 70.1 44 75.0
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 1.7e-10 70.1 51 66.7
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 2.8e-10 69.3 51 66.7
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 4.8e-10 68.6 54 61.1
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 4.8e-10 68.6 40 80.0
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 4.8e-10 68.6 39 79.5
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 8.2e-10 67.8 51 64.7
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 8.2e-10 67.8 45 71.1
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 1.4e-09 67.0 51 60.8
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 2.4e-09 66.2 51 58.8
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 4.1e-09 65.5 109 43.1
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 5.3e-09 65.1 43 69.8
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 6.9e-09 64.7 42 73.8
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 1.2e-08 63.9 87 43.7
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 1.5e-08 63.5 52 51.9
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 2.0e-08 63.2 42 71.4
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 7.7e-08 61.2 40 72.5
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 1.7e-07 60.1 40 70.0
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 1.7e-07 60.1 43 67.4
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 2.2e-07 59.7 43 72.1
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 6.5e-07 58.2 63 54.0
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 1.1e-06 57.4 28 96.4
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-06 57.4 28 96.4
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 1.4e-06 57.0 40 67.5
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 1.4e-06 57.0 33 81.8
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 1.9e-06 56.6 31 80.6
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 2.5e-06 56.2 28 92.9
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 2.5e-06 56.2 26 100.0
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 4.2e-06 55.5 28 89.3
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 5.5e-06 55.1 29 86.2
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 5.5e-06 55.1 28 89.3
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 9.4e-06 54.3 30 80.0
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 9.4e-06 54.3 29 86.2
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 9.4e-06 54.3 29 86.2


User provided reference genes

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