Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 0.0e+00 1173.7 600 100.0
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 5.0e-252 874.4 705 70.9
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 2.5e-251 872.1 701 71.6
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 6.4e-247 857.4 701 70.8
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 4.9e-106 389.4 639 41.9
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 2.2e-82 310.8 590 39.5
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.8e-52 211.5 540 34.6
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 9.1e-52 209.1 106 93.4
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 5.5e-41 173.3 516 31.8
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.2e-32 145.6 293 35.5
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.8e-24 117.9 252 35.3
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.0e-23 115.9 151 43.7
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.8e-23 115.2 151 43.7
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 5.2e-23 113.6 197 38.6
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.1e-20 105.9 239 34.7
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.1e-20 105.9 358 30.7
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 1.4e-20 105.5 153 42.5
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.4e-20 105.5 153 42.5
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 2.4e-20 104.8 113 47.8
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 2.4e-20 104.8 110 50.9
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 7.0e-20 103.2 204 35.8
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.0e-20 103.2 147 42.2
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 3.5e-19 100.9 169 39.6
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 4.6e-19 100.5 146 41.1
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 6.0e-19 100.1 71 64.8
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 1.7e-18 98.6 267 31.8
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.7e-18 98.6 174 37.4
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.7e-18 98.6 302 28.8
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 5.0e-18 97.1 146 39.7
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 8.6e-18 96.3 233 31.3
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 2.5e-17 94.7 277 28.9
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 3.3e-17 94.4 175 37.1
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 3.3e-17 94.4 175 37.1
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 4.3e-17 94.0 170 34.7
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 4.3e-17 94.0 283 30.0
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 9.5e-17 92.8 179 36.3
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 9.5e-17 92.8 109 46.8
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.2e-16 92.4 166 36.1
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 3.6e-16 90.9 109 46.8
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 3.6e-16 90.9 164 36.6
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 3.6e-16 90.9 97 43.3
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 4.7e-16 90.5 91 52.7
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 4.7e-16 90.5 91 52.7
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 4.7e-16 90.5 65 63.1
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 6.2e-16 90.1 87 55.2
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.1e-15 89.4 180 36.1
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.4e-15 89.0 92 50.0
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.4e-15 89.0 103 44.7
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.4e-15 89.0 65 60.0
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.8e-15 88.6 147 39.5
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 2.3e-15 88.2 291 27.1
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 2.3e-15 88.2 81 54.3
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 4.0e-15 87.4 109 46.8
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 4.0e-15 87.4 244 27.0
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 4.0e-15 87.4 103 44.7
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 5.2e-15 87.0 66 63.6
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 5.2e-15 87.0 103 44.7
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 6.8e-15 86.7 103 47.6
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 6.8e-15 86.7 103 47.6
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 6.8e-15 86.7 103 47.6
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 6.8e-15 86.7 142 39.4
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 8.9e-15 86.3 114 40.4
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 8.9e-15 86.3 480 25.2
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 1.2e-14 85.9 147 36.1
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 1.5e-14 85.5 73 60.3
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 2.0e-14 85.1 63 65.1
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 2.6e-14 84.7 95 48.4
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.6e-14 84.7 62 59.7
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 2.6e-14 84.7 105 45.7
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 4.4e-14 84.0 494 23.9
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 4.4e-14 84.0 216 30.1
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 5.8e-14 83.6 105 42.9
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 1.3e-13 82.4 85 49.4
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.7e-13 82.0 58 63.8
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 2.2e-13 81.6 58 65.5
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 2.9e-13 81.3 55 69.1
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 2.9e-13 81.3 87 50.6
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 3.7e-13 80.9 122 37.7
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 3.7e-13 80.9 371 26.4
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 6.4e-13 80.1 70 48.6
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.1e-12 79.3 92 44.6
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 1.1e-12 79.3 98 42.9
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 1.1e-12 79.3 98 42.9
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-12 79.3 54 68.5
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 1.1e-12 79.3 54 68.5
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 1.9e-12 78.6 58 62.1
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.4e-12 78.2 75 50.7
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 3.2e-12 77.8 57 59.6
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 3.2e-12 77.8 55 63.6
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 3.2e-12 77.8 55 61.8
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.1e-12 76.6 75 49.3
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.2e-11 75.9 326 27.9
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.2e-11 75.9 58 62.1
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-11 75.5 96 43.8
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-11 75.5 96 43.8
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-11 75.5 96 43.8
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-11 75.5 96 43.8
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-11 75.5 96 43.8
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 3.5e-11 74.3 55 52.7
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 3.5e-11 74.3 57 63.2
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 4.6e-11 73.9 54 61.1
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 4.6e-11 73.9 95 42.1
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 7.8e-11 73.2 288 28.1
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 7.8e-11 73.2 90 45.6
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.0e-10 72.8 105 39.0
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.0e-10 72.8 93 44.1
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 1.7e-10 72.0 63 54.0
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 1.7e-10 72.0 64 54.7
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 1.7e-10 72.0 64 54.7
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.7e-10 72.0 99 42.4
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 3.0e-10 71.2 57 57.9
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.1e-10 70.5 64 53.1
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 2.5e-09 68.2 49 57.1
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 2.5e-09 68.2 49 57.1
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.5e-09 68.2 55 56.4
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.5e-09 68.2 55 56.4
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.5e-09 68.2 55 56.4
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 3.3e-09 67.8 50 60.0
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 9.5e-09 66.2 46 65.2
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 9.5e-09 66.2 64 51.6
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.2e-08 65.9 54 57.4
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 3.6e-08 64.3 47 61.7
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 4.7e-08 63.9 67 49.3
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.1e-07 62.8 68 42.6
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.4e-07 62.4 64 51.6
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 1.8e-07 62.0 55 56.4
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 2.6e-06 58.2 467 23.3


User provided reference genes

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