Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 0.0e+00 1300.0 773 100.0
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 0.0e+00 1247.3 773 96.8
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 5.5e-219 765.0 801 67.2
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 2.1e-194 683.3 789 64.1
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 4.2e-150 536.2 788 53.2
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.7e-149 533.5 808 51.4
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 6.3e-146 522.3 785 51.8
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.5e-144 517.7 740 53.5
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.1e-142 511.5 798 53.6
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 7.2e-142 508.8 755 53.8
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 2.1e-141 507.3 797 52.9
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 4.6e-141 506.1 666 56.3
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 5.1e-140 502.7 762 54.3
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 5.3e-137 492.7 773 50.5
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.3e-137 492.7 744 54.4
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 2.0e-136 490.7 785 51.7
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 8.5e-135 485.3 812 51.7
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.9e-134 484.2 788 48.0
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 7.2e-134 482.3 762 55.2
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 5.1e-132 476.1 795 51.1
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 5.1e-132 476.1 802 48.9
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.5e-131 474.6 791 50.6
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.5e-131 474.6 791 50.6
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 2.0e-131 474.2 744 57.0
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 5.7e-131 472.6 795 53.6
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 9.7e-131 471.9 794 46.3
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.4e-129 467.2 712 55.1
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 9.1e-129 465.3 819 48.2
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.9e-128 462.6 791 50.2
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 2.2e-127 460.7 712 54.2
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 6.1e-125 452.6 798 46.4
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 6.1e-125 452.6 687 53.1
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.8e-124 451.1 816 48.4
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 2.3e-124 450.7 809 48.6
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 6.7e-124 449.1 784 50.4
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.5e-123 448.0 740 49.6
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 3.7e-122 443.4 729 52.5
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 7.0e-121 439.1 812 48.0
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 4.2e-118 429.9 704 50.1
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 7.2e-118 429.1 741 47.8
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 8.0e-117 425.6 730 50.4
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.8e-116 424.5 742 49.2
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 6.3e-114 416.0 740 49.2
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.8e-113 414.5 770 48.6
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 2.0e-112 411.0 714 51.0
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.7e-112 410.6 686 51.7
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 5.9e-112 409.5 794 45.1
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.5e-110 404.8 750 45.3
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 3.2e-110 403.7 759 48.6
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.2e-109 401.7 716 47.6
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 7.5e-107 392.5 728 46.7
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.6e-104 384.8 736 47.7
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.3e-103 380.9 737 45.9
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.8e-103 380.2 739 47.5
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.5e-102 378.3 749 50.1
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.5e-102 378.3 771 45.7
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.5e-99 368.2 690 46.1
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 2.0e-99 367.9 697 45.6
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.0e-99 367.9 712 46.1
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.2e-96 358.6 601 47.1
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 2.0e-96 357.8 716 44.1
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 3.5e-96 357.1 714 47.8
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 3.5e-96 357.1 683 47.1
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 2.1e-93 347.8 634 46.7
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 2.3e-92 344.4 751 44.7
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 5.8e-91 339.7 731 46.0
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 9.8e-91 339.0 625 47.2
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 5.0e-87 326.6 683 41.4
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.1e-86 325.5 728 47.1
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.9e-86 324.7 698 46.8
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 8.0e-85 319.3 683 44.7
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 6.8e-84 316.2 792 43.1
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.2e-82 311.2 726 39.7
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 4.9e-82 310.1 660 44.2
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 3.2e-81 307.4 796 43.5
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 7.1e-81 306.2 697 42.0
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 3.5e-80 303.9 726 40.2
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.0e-79 302.4 459 49.0
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 3.9e-79 300.4 695 47.2
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 6.6e-79 299.7 727 41.8
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 2.5e-78 297.7 632 46.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 8.9e-76 289.3 708 40.0
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 8.9e-76 289.3 730 41.8
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.5e-75 288.5 774 38.2
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.0e-75 288.1 766 41.3
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 2.0e-75 288.1 736 38.0
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 4.1e-73 280.4 711 42.2
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 4.1e-73 280.4 690 39.1
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.6e-72 278.5 796 36.8
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.3e-71 274.6 799 40.7
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.3e-71 274.6 695 42.7
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 5.1e-71 273.5 815 39.0
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.3e-70 270.4 785 39.4
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.6e-69 268.5 719 37.3
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 2.1e-69 268.1 330 57.0
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.0e-64 250.0 265 58.1
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.0e-63 249.2 704 42.6
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 1.1e-62 245.7 686 36.7
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.9e-62 245.0 751 35.6
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 9.6e-62 242.7 712 38.8
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.6e-61 241.9 713 36.3
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 4.8e-61 240.4 672 37.2
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 6.9e-60 236.5 806 37.7
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 4.9e-58 230.3 717 36.0
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.2e-57 227.6 716 36.2
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 4.2e-57 227.3 631 36.5
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 4.2e-57 227.3 795 34.5
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 9.3e-57 226.1 781 38.2
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 4.6e-56 223.8 702 34.0
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 6.6e-55 219.9 747 38.4
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.5e-54 218.0 637 38.8
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.1e-53 214.9 778 37.8
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.1e-53 214.9 732 36.7
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.1e-53 214.9 471 43.3
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-51 209.1 624 36.1
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 3.4e-51 207.6 455 47.5
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 5.8e-51 206.8 691 39.4
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 2.9e-50 204.5 324 51.9
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.4e-49 202.2 322 48.1
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.9e-49 201.8 704 39.1
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.2e-48 199.1 266 50.0
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.1e-48 198.4 701 38.9
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.1e-48 198.4 718 38.0
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.6e-48 197.2 789 36.2
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.3e-46 191.0 496 39.1
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.1e-45 188.3 793 32.3
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.1e-45 188.3 618 39.6
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.8e-45 187.2 609 36.9
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 4.8e-45 187.2 581 36.1
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 3.4e-43 181.0 713 32.8
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.9e-42 177.9 209 53.1
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 2.9e-42 177.9 672 33.6
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.4e-41 175.6 426 39.7
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 2.1e-40 171.8 555 35.9
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.0e-39 169.5 580 35.3
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 3.9e-39 167.5 617 33.9
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.1e-38 166.0 786 34.0
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.4e-36 159.1 650 36.5
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.4e-36 158.3 727 30.7
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.4e-35 154.5 716 31.0
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.7e-34 152.1 646 34.2
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.7e-34 152.1 676 31.4
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 5.0e-34 150.6 425 45.9
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 1.0e-31 142.9 461 35.6
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.5e-30 139.0 152 57.9
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.9e-30 138.7 146 62.3
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 8.2e-29 133.3 144 53.5
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 9.0e-28 129.8 416 43.3
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.2e-25 121.3 216 45.4
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 9.4e-25 119.8 558 30.8
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 2.1e-24 118.6 135 57.0
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.7e-21 109.0 284 37.0
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 6.3e-21 107.1 566 31.1
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 6.3e-21 107.1 566 31.1
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 8.2e-21 106.7 549 35.2
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 3.1e-20 104.8 545 33.2
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 1.2e-19 102.8 117 57.3
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.0e-19 102.1 237 38.4
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.7e-18 99.0 552 30.1
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.0e-18 97.4 588 30.6
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 4.2e-17 94.4 559 31.3
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 5.5e-17 94.0 279 33.7
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 8.8e-15 86.7 124 51.6
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 2.6e-14 85.1 556 30.9
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 8.5e-10 70.1 120 42.5
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 3.2e-09 68.2 124 44.4
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 5.5e-09 67.4 124 44.4
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 5.5e-09 67.4 83 55.4
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 2.1e-08 65.5 61 62.3
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.1e-08 65.5 303 28.4
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.8e-07 62.4 184 30.4
Psat3g059240 Pisum sativum HOM05D003795 ORTHO05D004308 3.0e-07 61.6 97 46.4
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 8.8e-07 60.1 382 27.7


User provided reference genes

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