Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.1e-102 376.7 204 100.0
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 1.6e-96 356.3 197 98.0
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.1e-49 200.7 208 61.1
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.0e-47 194.1 208 59.6
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.3e-47 193.0 202 62.4
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 3.7e-45 185.7 203 64.5
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 5.3e-44 181.8 206 63.6
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 7.9e-40 167.9 197 60.4
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 1.5e-35 153.7 210 51.9
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 1.2e-32 144.1 201 51.2
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 1.6e-32 143.7 216 47.2
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 2.1e-32 143.3 208 49.5
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.1e-32 141.7 190 51.6
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.1e-32 141.7 190 51.6
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 2.3e-31 139.8 211 49.8
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 3.0e-31 139.4 151 62.3
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 3.9e-31 139.0 195 49.2
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.7e-31 138.3 190 50.5
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 1.1e-30 137.5 199 46.2
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 1.1e-30 137.5 205 46.8
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.4e-30 134.8 190 48.9
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 7.4e-30 134.8 211 47.4
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.3e-29 134.0 181 49.2
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 1.3e-29 134.0 209 46.4
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 3.7e-29 132.5 224 44.6
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 4.8e-29 132.1 226 44.2
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 4.8e-29 132.1 226 44.2
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 1.8e-28 130.2 211 47.4
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.8e-28 130.2 216 48.1
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 2.6e-27 126.3 181 47.5
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.4e-27 125.9 147 56.5
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 4.5e-27 125.6 207 47.3
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 4.5e-27 125.6 145 52.4
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 2.2e-26 123.2 203 44.3
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 3.8e-26 122.5 190 48.9
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 3.8e-26 122.5 201 45.3
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.1e-25 120.9 212 46.2
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.1e-25 120.9 191 45.5
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 1.4e-25 120.6 205 44.4
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.4e-25 120.6 199 46.2
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 1.9e-25 120.2 197 44.7
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.5e-25 119.8 178 44.9
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 3.2e-25 119.4 199 43.7
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.2e-25 119.4 181 45.9
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 7.2e-25 118.2 197 45.2
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 7.2e-25 118.2 194 44.3
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.1e-24 116.7 179 44.7
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.7e-24 116.3 179 44.7
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 3.6e-24 115.9 196 45.9
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 4.7e-24 115.5 209 47.8
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 6.1e-24 115.2 181 45.9
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 6.1e-24 115.2 181 45.9
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 7.9e-24 114.8 174 47.7
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.8e-23 113.6 203 44.3
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 2.3e-23 113.2 196 45.9
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 5.2e-23 112.1 191 45.0
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 5.2e-23 112.1 210 43.8
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 6.7e-23 111.7 213 41.3
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.5e-22 110.5 212 42.5
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 2.0e-22 110.2 208 43.3
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 3.3e-22 109.4 225 42.7
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 7.4e-22 108.2 207 39.1
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 7.4e-22 108.2 203 39.4
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 7.4e-22 108.2 218 43.6
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 7.4e-22 108.2 220 42.3
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 9.7e-22 107.8 214 43.9
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.2e-21 106.7 200 43.0
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 2.8e-21 106.3 210 41.0
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 3.7e-21 105.9 202 42.6
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 4.8e-21 105.5 185 43.8
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 6.3e-21 105.1 206 42.2
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 6.3e-21 105.1 199 42.7
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-20 104.4 196 41.8
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 7.0e-20 101.7 202 42.1
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 7.0e-20 101.7 215 39.1
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 9.1e-20 101.3 223 40.4
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.2e-19 100.9 195 42.1
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 1.6e-19 100.5 217 39.2
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 2.0e-19 100.1 216 42.6
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 7.7e-19 98.2 219 38.4
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 7.7e-19 98.2 128 48.4
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 1.0e-18 97.8 186 42.5
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 1.0e-18 97.8 183 43.2
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 1.0e-18 97.8 209 41.1
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.9e-18 96.3 211 39.3
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 3.8e-18 95.9 213 40.8
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 3.8e-18 95.9 179 40.8
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 6.5e-18 95.1 228 38.2
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 8.5e-18 94.7 96 61.5
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 8.5e-18 94.7 232 37.5
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 1.1e-17 94.4 185 38.4
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.5e-17 94.0 215 38.1
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 3.2e-17 92.8 198 43.4
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 3.2e-17 92.8 169 43.2
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 3.2e-17 92.8 211 38.9
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 4.2e-17 92.4 212 37.3
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 9.4e-17 91.3 214 40.7
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.6e-16 90.5 224 39.7
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.6e-16 90.5 97 61.9
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 2.1e-16 90.1 216 37.5
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 2.1e-16 90.1 204 38.7
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 2.7e-16 89.7 90 61.1
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.7e-16 89.7 214 37.9
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 6.1e-16 88.6 215 40.0
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 8.0e-16 88.2 204 41.2
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 8.0e-16 88.2 204 41.2
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 1.0e-15 87.8 181 37.6
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.8e-15 87.0 187 42.2
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 1.8e-15 87.0 187 42.2
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 3.0e-15 86.3 203 37.9
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 5.2e-15 85.5 223 38.6
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.5e-14 84.0 223 39.5
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 2.6e-14 83.2 204 37.7
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 2.6e-14 83.2 209 37.3
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.6e-14 83.2 225 39.1
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 2.6e-14 83.2 223 39.0
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 9.7e-14 81.3 196 35.2
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 9.7e-14 81.3 210 35.7
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 2.2e-13 80.1 209 35.4
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 3.7e-13 79.3 201 40.3
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 6.3e-13 78.6 226 36.3
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.1e-12 77.8 228 36.0
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.4e-12 77.4 194 33.5
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.4e-12 76.6 197 33.5
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 4.1e-12 75.9 196 35.7
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 5.3e-12 75.5 200 34.0
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 9.1e-12 74.7 211 35.5
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 1.6e-11 73.9 207 38.2
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.7e-11 73.2 153 38.6
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 3.5e-11 72.8 199 34.2
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 3.5e-11 72.8 196 31.6
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 3.5e-11 72.8 193 37.8
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 4.5e-11 72.4 209 37.8
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.9e-11 72.0 81 50.6
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 7.7e-11 71.6 183 35.5
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 1.0e-10 71.2 157 35.7
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.7e-10 70.5 217 35.5
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 2.9e-10 69.7 183 35.5
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 3.8e-10 69.3 156 39.1
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 3.2e-09 66.2 191 34.6
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 4.2e-09 65.9 180 40.6
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 3.6e-08 62.8 185 30.8
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 4.7e-08 62.4 130 38.5
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 1.0e-07 61.2 202 35.6
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.4e-07 60.8 78 50.0
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 2.3e-07 60.1 209 33.0
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 5.2e-07 58.9 77 49.4
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 3.4e-06 56.2 190 28.9
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 5.7e-06 55.5 91 42.9


User provided reference genes

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