Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p054338 Quercus lobata HOM05D005159 ORTHO05D006237 3.1e-150 535.4 333 100.0
CiPaw.03G007500 Carya illinoinensis HOM05D005159 ORTHO05D006237 6.1e-66 255.4 313 62.0
Sabra04G0075100 Salix brachista HOM05D005159 ORTHO05D006237 1.9e-62 243.8 340 47.9
TWI32G0838 Tripterygium wilfordii HOM05D005159 ORTHO05D006237 8.9e-57 224.9 356 48.0
Potri.004G106900 Populus trichocarpa HOM05D005159 ORTHO05D006237 2.0e-56 223.8 336 46.4
Potri.017G108700 Populus trichocarpa HOM05D005159 ORTHO05D006237 2.6e-56 223.4 335 46.3
Ciclev10012260m.g Citrus clementina HOM05D005159 ORTHO05D006237 2.4e-54 216.9 358 44.4
GSVIVG01036491001 Vitis vinifera HOM05D005159 ORTHO05D006237 2.4e-54 216.9 360 45.0
CANSAT21G0179 Cannabis sativa HOM05D005159 ORTHO05D006237 1.3e-52 211.1 345 45.8
Prupe.3G244000 Prunus persica HOM05D005159 ORTHO05D006237 1.3e-52 211.1 353 49.3
Cpa.g.sc70.15 Carica papaya HOM05D005159 ORTHO05D006237 2.3e-52 210.3 348 44.3
FvH4_6g45790 Fragaria vesca HOM05D005159 ORTHO05D006237 1.1e-51 208.0 355 46.8
Sed0002827 Sechium edule HOM05D005159 ORTHO05D006237 1.5e-51 207.6 132 81.8
Atru.chr11.1725 Acer truncatum HOM05D005159 ORTHO05D006237 1.9e-51 207.2 280 61.4
FAN09G0042 Fragaria x ananassa HOM05D005159 ORTHO05D006237 3.3e-51 206.5 355 46.5
Glyma.13G171200 Glycine max HOM05D005159 ORTHO05D006237 5.6e-51 205.7 132 79.5
Sed0024356 Sechium edule HOM05D005159 ORTHO05D006237 5.6e-51 205.7 132 78.8
CsaV3_5G013180 Cucumis sativus L. HOM05D005159 ORTHO05D006237 8.1e-50 201.8 230 53.0
Dinv33896 Davidia involucrata HOM05D005159 ORTHO05D006237 1.1e-49 201.4 214 55.6
Haze_14082 Corylus avellana HOM05D005159 ORTHO05D006237 1.4e-49 201.1 328 54.3
Manes.01G106500 Manihot esculenta HOM05D005159 ORTHO05D006237 3.1e-49 199.9 230 54.3
MELO3C020033.2 Cucumis melo HOM05D005159 ORTHO05D006237 5.2e-49 199.1 230 52.2
MBI15_g18197_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 5.2e-49 199.1 347 40.3
Migut.K00872 Erythranthe guttata HOM05D005159 ORTHO05D006237 2.0e-48 197.2 132 76.5
Glyma.07G204700 Glycine max HOM05D005159 ORTHO05D006237 3.4e-48 196.4 346 42.2
Peaxi162Scf00479g00439 Petunia axillaris HOM05D005159 ORTHO05D006237 5.8e-48 195.7 336 41.7
SGA_v2.0_scaffold10G05141 Striga asiatica HOM05D005159 ORTHO05D006237 7.6e-48 195.3 250 47.6
PGR004G1892 Punica granatum HOM05D005159 ORTHO05D006237 9.9e-48 194.9 340 42.4
Actinidia36292 Actinidia chinensis HOM05D005159 ORTHO05D006237 1.7e-47 194.1 131 74.8
Solyc03g046350.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 1.7e-47 194.1 347 41.2
THA.LOC104805544 Tarenaya hassleriana HOM05D005159 ORTHO05D006237 1.7e-47 194.1 231 51.5
Gohir.A13G118100 Gossypium hirsutum HOM05D005159 ORTHO05D006237 3.7e-47 193.0 294 43.5
Phvul.008G006700 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 4.9e-47 192.6 335 41.8
Thecc.04G145900 Theobroma cacao HOM05D005159 ORTHO05D006237 4.9e-47 192.6 132 75.0
MD17G1070200 Malus domestica HOM05D005159 ORTHO05D006237 8.3e-47 191.8 353 46.5
Oeu062202.1 Olea europaea HOM05D005159 ORTHO05D006237 1.1e-46 191.4 132 73.5
Duzib211G0079 Durio zibethinus HOM05D005159 ORTHO05D006237 1.4e-46 191.0 303 43.9
Ca_13657_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 2.4e-46 190.3 132 73.5
Cc08_g12050 Coffea canephora HOM05D005159 ORTHO05D006237 2.4e-46 190.3 132 73.5
Gohir.D13G121900 Gossypium hirsutum HOM05D005159 ORTHO05D006237 3.2e-46 189.9 294 42.9
RcHm_v2.0_Chr2g0163971 Rosa chinensis HOM05D005159 ORTHO05D006237 3.2e-46 189.9 359 49.9
FAN05G5180 Fragaria x ananassa HOM05D005159 ORTHO05D006237 4.1e-46 189.5 371 45.6
Gorai.013G136600 Gossypium raimondii HOM05D005159 ORTHO05D006237 5.4e-46 189.1 294 42.9
Medtr4g051625 Medicago truncatula HOM05D005159 ORTHO05D006237 5.4e-46 189.1 242 47.1
CDE02G0002 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 7.1e-46 188.7 132 71.2
arahy.Tifrunner.gnm1.ann1.MEN3PN Arachis hypogaea HOM05D005159 ORTHO05D006237 9.2e-46 188.3 338 40.5
Nitab4.5_0006224g0050 Nicotiana tabacum HOM05D005159 ORTHO05D006237 9.2e-46 188.3 278 45.7
unitig_61.g26382 Utricularia gibba HOM05D005159 ORTHO05D006237 9.2e-46 188.3 132 72.7
Sopen03g009860 Solanum pennellii HOM05D005159 ORTHO05D006237 2.7e-45 186.8 340 40.0
Ca_26327_v3 Cicer arietinum L. HOM05D005159 ORTHO05D006237 3.5e-45 186.4 163 60.1
Medtr8g085800 Medicago truncatula HOM05D005159 ORTHO05D006237 3.5e-45 186.4 132 72.0
CDE01G0131 Ceratophyllum demersum HOM05D005159 ORTHO05D006237 7.8e-45 185.3 276 46.0
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 1.3e-44 184.5 343 40.5
ClCG11G001130 Citrullus lanatus HOM05D005159 ORTHO05D006237 1.7e-44 184.1 367 38.4
FAN02G2008 Fragaria x ananassa HOM05D005159 ORTHO05D006237 1.7e-44 184.1 300 52.3
BcaC02g09665 Brassica carinata HOM05D005159 ORTHO05D006237 2.3e-44 183.7 133 70.7
C04p45340 Brassica napus HOM05D005159 ORTHO05D006237 2.3e-44 183.7 133 70.7
BolC4t26116H Brassica oleracea HOM05D005159 ORTHO05D006237 2.3e-44 183.7 133 70.7
BraA04t16828Z Brassica rapa HOM05D005159 ORTHO05D006237 2.3e-44 183.7 133 70.7
Nn1g09575 Nelumbo nucifera HOM05D005159 ORTHO05D006237 5.1e-44 182.6 357 40.1
TPR.G37714 Trifolium pratense HOM05D005159 ORTHO05D006237 5.1e-44 182.6 269 46.8
PGSC0003DMG400018775 Solanum tuberosum HOM05D005159 ORTHO05D006237 6.6e-44 182.2 353 40.8
A04p11610 Brassica napus HOM05D005159 ORTHO05D006237 8.6e-44 181.8 133 69.9
MD09G1079700 Malus domestica HOM05D005159 ORTHO05D006237 1.1e-43 181.4 359 44.0
Peaxi162Scf01056g00019 Petunia axillaris HOM05D005159 ORTHO05D006237 1.1e-43 181.4 349 41.0
MSTRG.15424 Avicennia marina HOM05D005159 ORTHO05D006237 3.3e-43 179.9 385 38.4
CAN.G497.25 Capsicum annuum HOM05D005159 ORTHO05D006237 4.3e-43 179.5 317 41.3
Nitab4.5_0001982g0030 Nicotiana tabacum HOM05D005159 ORTHO05D006237 4.3e-43 179.5 381 39.4
DCAR_026285 Daucus carota HOM05D005159 ORTHO05D006237 7.3e-43 178.7 340 42.6
MBI15_g38433_MAGBIO Magnolia biondii HOM05D005159 ORTHO05D006237 7.3e-43 178.7 316 39.6
Medtr1g090650 Medicago truncatula HOM05D005159 ORTHO05D006237 7.3e-43 178.7 132 69.7
Psat6g166480 Pisum sativum HOM05D005159 ORTHO05D006237 7.3e-43 178.7 132 70.5
Thhalv10028147m.g Eutrema salsugineum HOM05D005159 ORTHO05D006237 1.2e-42 177.9 133 68.4
Lju237A1T66 Lonicera japonica HOM05D005159 ORTHO05D006237 1.2e-42 177.9 390 37.9
Lsat_1_v5_gn_8_24161 Lactuca sativa HOM05D005159 ORTHO05D006237 2.8e-42 176.8 136 69.1
Sc10g0001500 Simmondsia chinensis HOM05D005159 ORTHO05D006237 3.6e-42 176.4 342 41.2
Ah.15g094970 Amaranthus hybridus HOM05D005159 ORTHO05D006237 4.7e-42 176.0 132 68.2
AT5G38720 Arabidopsis thaliana HOM05D005159 ORTHO05D006237 4.7e-42 176.0 364 38.2
Solyc02g089600.3 Solanum lycopersicum HOM05D005159 ORTHO05D006237 6.2e-42 175.6 348 40.2
arahy.Tifrunner.gnm1.ann1.VE7QKQ Arachis hypogaea HOM05D005159 ORTHO05D006237 1.1e-41 174.9 338 38.5
PGSC0003DMG400010100 Solanum tuberosum HOM05D005159 ORTHO05D006237 1.8e-41 174.1 341 40.2
AL7G51700 Arabidopsis lyrata HOM05D005159 ORTHO05D006237 2.4e-41 173.7 292 41.1
AUR62016605 Chenopodium quinoa HOM05D005159 ORTHO05D006237 3.1e-41 173.3 287 43.6
Aa31LG9G16930 Aethionema arabicum HOM05D005159 ORTHO05D006237 4.0e-41 172.9 348 39.7
Aqoxy3G00614 Aquilegia oxysepala HOM05D005159 ORTHO05D006237 4.0e-41 172.9 132 68.2
HPP92_015315 Vanilla planifolia HOM05D005159 ORTHO05D006237 5.2e-41 172.6 132 66.7
BcaB06g27239 Brassica carinata HOM05D005159 ORTHO05D006237 6.8e-41 172.2 365 38.4
Actinidia18107 Actinidia chinensis HOM05D005159 ORTHO05D006237 8.9e-41 171.8 384 37.8
Carub.0007s3714 Capsella rubella HOM05D005159 ORTHO05D006237 2.6e-40 170.2 334 38.9
Hund27686 Selenicereus undatus HOM05D005159 ORTHO05D006237 3.4e-40 169.9 340 39.4
Hund27687 Selenicereus undatus HOM05D005159 ORTHO05D006237 3.4e-40 169.9 340 39.4
PSO017G6426 Papaver somniferum HOM05D005159 ORTHO05D006237 5.8e-40 169.1 131 64.1
Ah.08g217340 Amaranthus hybridus HOM05D005159 ORTHO05D006237 1.7e-39 167.5 254 50.0
BcaC08g44401 Brassica carinata HOM05D005159 ORTHO05D006237 1.7e-39 167.5 134 67.2
Psat7g186040 Pisum sativum HOM05D002527 ORTHO05D002865 3.8e-39 166.4 150 60.0
arahy.Tifrunner.gnm1.ann1.3J3UL0 Arachis hypogaea HOM05D005159 ORTHO05D006237 2.4e-38 163.7 131 67.2
AUR62026768 Chenopodium quinoa HOM05D005159 ORTHO05D006237 2.4e-38 163.7 130 65.4
EL10Ac7g16490 Beta vulgaris HOM05D005159 ORTHO05D006237 3.2e-38 163.3 289 41.2
HanXRQChr03g0078031 Helianthus annuus HOM05D005159 ORTHO05D006237 3.2e-38 163.3 305 39.3
Sp7g03200 Schrenkiella parvula HOM05D005159 ORTHO05D006237 3.2e-38 163.3 374 38.2
ECA240G3626 Erigeron canadensis HOM05D005159 ORTHO05D006237 5.4e-38 162.5 369 38.2
SalBow1G7987 Salvia bowleyana HOM05D005159 ORTHO05D006237 5.4e-38 162.5 349 38.4
PSO478G0642 Papaver somniferum HOM05D005159 ORTHO05D006237 9.3e-38 161.8 131 61.8
BolC6t37046H Brassica oleracea HOM05D005159 ORTHO05D006237 2.7e-37 160.2 265 42.3
SEGI_21798 Sequoiadendron giganteum HOM05D005159 ORTHO05D006237 3.5e-37 159.8 131 64.1
C06p18340 Brassica napus HOM05D005159 ORTHO05D006237 4.6e-37 159.5 268 42.2
Phvul.001G061500 Phaseolus vulgaris HOM05D005159 ORTHO05D006237 3.0e-36 156.8 225 48.0
VMungo1383G3720 Vigna mungo HOM05D005159 ORTHO05D006237 3.0e-36 156.8 328 38.4
TAR371G0967 Trochodendron aralioides HOM05D005159 ORTHO05D006237 5.1e-36 156.0 281 40.9
TAR629G0318 Trochodendron aralioides HOM05D005159 ORTHO05D006237 6.6e-36 155.6 110 72.7
CSS0013880 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 1.9e-35 154.1 203 47.8
AUR62011452 Chenopodium quinoa HOM05D005159 ORTHO05D006237 2.5e-35 153.7 324 38.3
Lj6g0020881 Lotus japonicus HOM05D005159 ORTHO05D006237 1.3e-34 151.4 224 46.4
Zm00001eb253420 Zea mays HOM05D005159 ORTHO05D006237 1.3e-34 151.4 132 59.1
CSS0007706 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 3.1e-33 146.7 205 46.3
CSS0044288 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 3.1e-33 146.7 205 46.3
Os02g0728700 Oryza sativa ssp. japonica HOM05D005159 ORTHO05D006237 3.1e-33 146.7 352 34.4
COL.COLO4_37042 Corchorus olitorius HOM05D005159 ORTHO05D006237 1.2e-32 144.8 203 44.8
Lalb_Chr18g0059201 Lupinus albus HOM05D005159 ORTHO05D006237 1.5e-32 144.4 338 37.0
ATR0691G244 Amborella trichopoda HOM05D005159 ORTHO05D006237 4.4e-32 142.9 132 59.1
TPR.G28602 Trifolium pratense HOM05D005159 ORTHO05D006237 7.6e-32 142.1 214 43.0
Pp3c10_24110 Physcomitrium patens HOM05D005159 ORTHO05D006237 8.4e-31 138.7 134 56.0
Nn8g41096 Nelumbo nucifera HOM05D005159 ORTHO05D006237 7.1e-30 135.6 132 59.1
Rhsim08G0081100 Rhododendron simsii HOM05D005159 ORTHO05D006237 2.7e-29 133.7 318 36.8
FAN14G1445 Fragaria x ananassa HOM05D005159 ORTHO05D006237 6.0e-29 132.5 99 72.7
vmacro18090 Vaccinium macrocarpon HOM05D005159 ORTHO05D006237 1.0e-28 131.7 231 40.7
CARHR291790 Cardamine hirsuta HOM05D005159 ORTHO05D006237 1.9e-27 127.5 136 55.1
TAR629G0746 Trochodendron aralioides HOM05D005159 ORTHO05D006237 2.5e-27 127.1 107 62.6
CSS0028445 Camellia sinensis var. sinensis HOM05D005159 ORTHO05D006237 7.3e-27 125.6 203 43.3
Sopen02g034320 Solanum pennellii HOM05D005159 ORTHO05D006237 9.6e-27 125.2 375 33.1
Mapoly0058s0026 Marchantia polymorpha HOM05D005159 ORTHO05D006237 8.1e-26 122.1 124 50.8
SMO196G0176 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 4.5e-24 116.3 150 44.7
AUR62013504 Chenopodium quinoa HOM05D000258 ORTHO05D006237 2.3e-20 104.0 89 61.8
CBR_g4867 Chara braunii HOM05D005159 ORTHO05D006237 3.0e-20 103.6 133 47.4
Lj7A7T32 Lonicera japonica HOM05D005159 ORTHO05D006237 8.1e-18 95.5 296 33.4
Medtr8g085830 Medicago truncatula HOM05D005159 ORTHO05D006237 2.0e-16 90.9 99 56.6
SMO234G0023 Selaginella moellendorffii HOM05D005159 ORTHO05D006237 7.6e-16 89.0 104 44.2
arahy.Tifrunner.gnm1.ann1.YDKP0V Arachis hypogaea HOM05D005159 ORTHO05D006237 2.2e-15 87.4 83 60.2
MCO13G254 Micromonas commoda HOM05D005159 ORTHO05D006237 2.9e-15 87.0 133 40.6
AagrBONN_evm.TU.Sc2ySwM_369.363 Anthoceros agrestis HOM05D005159 ORTHO05D006237 7.1e-14 82.4 106 47.2
QL06p007211 Quercus lobata HOM05D005159 ORTHO05D006237 1.0e-12 78.6 57 70.2
CBR_g52693 Chara braunii HOM05D005159 ORTHO05D006237 1.3e-10 71.6 132 34.1
Cre01.g052200 Chlamydomonas reinhardtii HOM05D005159 ORTHO05D006237 4.1e-09 66.6 137 32.8
Oeu062205.1 Olea europaea HOM05D005159 ORTHO05D006237 2.9e-07 60.5 135 34.8


User provided reference genes

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