Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 2.7e-165 585.5 349 100.0
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 2.2e-127 459.5 350 74.9
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 1.6e-125 453.4 350 73.1
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 6.3e-122 441.4 351 69.8
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 4.6e-112 408.7 351 66.1
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 2.0e-107 393.3 351 64.4
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 3.4e-107 392.5 351 63.8
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 5.8e-107 391.7 352 69.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 7.5e-107 391.3 351 65.0
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 1.7e-106 390.2 351 64.7
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.4e-106 388.3 351 64.1
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.1e-105 387.5 351 64.1
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.4e-105 387.1 351 64.7
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 2.4e-105 386.3 351 64.4
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 5.4e-105 385.2 351 64.4
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 2.0e-104 383.3 351 63.2
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 4.6e-104 382.1 352 63.4
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.0e-103 380.9 351 65.5
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 3.9e-103 379.0 352 63.1
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 3.9e-103 379.0 352 61.9
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 8.6e-103 377.9 352 62.8
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 1.5e-102 377.1 364 63.7
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 5.6e-102 375.2 351 63.0
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.6e-101 373.6 351 65.5
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 2.1e-101 373.2 351 62.7
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 3.6e-101 372.5 353 64.0
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 4.7e-101 372.1 351 63.2
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 6.2e-101 371.7 352 63.1
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 4.0e-100 369.0 351 62.1
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 8.9e-100 367.9 362 61.9
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 9.9e-99 364.4 351 63.2
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 4.9e-98 362.1 352 60.2
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 8.3e-98 361.3 351 62.4
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 1.9e-97 360.1 359 59.1
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 9.2e-97 357.8 351 61.5
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 2.7e-96 356.3 352 59.7
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 1.3e-95 354.0 353 60.3
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.3e-95 354.0 351 60.1
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 3.0e-95 352.8 355 59.4
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 3.9e-95 352.4 366 58.5
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 8.6e-95 351.3 352 58.8
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 4.3e-94 349.0 353 58.6
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 9.5e-94 347.8 351 58.7
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 2.1e-93 346.7 353 58.6
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 2.1e-93 346.7 351 58.4
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.6e-93 345.9 349 58.7
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.6e-93 345.9 349 58.7
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.6e-93 345.9 352 57.7
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 6.2e-93 345.1 352 57.4
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 1.8e-92 343.6 351 59.3
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 4.0e-92 342.4 352 58.2
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 4.0e-92 342.4 351 58.4
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 6.8e-92 341.7 351 58.1
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.5e-91 340.5 354 58.5
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 2.6e-91 339.7 351 58.4
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 3.4e-91 339.3 346 60.4
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 5.8e-91 338.6 351 58.4
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 1.7e-90 337.0 353 57.8
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 1.7e-90 337.0 354 61.6
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 6.4e-90 335.1 355 57.2
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 3.2e-89 332.8 351 58.1
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 4.1e-89 332.4 421 51.1
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 5.4e-89 332.0 351 56.7
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 5.4e-89 332.0 353 63.7
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 9.2e-89 331.3 351 57.8
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.2e-88 330.9 363 55.6
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 2.1e-88 330.1 351 57.8
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 2.1e-88 330.1 351 57.8
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 2.7e-88 329.7 351 56.4
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 3.5e-88 329.3 351 56.4
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 3.5e-88 329.3 351 56.4
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 6.0e-88 328.6 351 57.3
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 6.0e-88 328.6 351 57.3
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 7.8e-88 328.2 351 57.8
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 7.8e-88 328.2 351 57.3
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 1.0e-87 327.8 352 56.8
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 6.6e-87 325.1 351 57.0
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 5.6e-86 322.0 350 58.6
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 2.1e-85 320.1 354 56.5
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 2.1e-85 320.1 404 51.7
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 6.2e-85 318.5 353 55.5
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 1.1e-84 317.8 342 56.7
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 4.0e-84 315.8 355 55.8
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 5.2e-84 315.5 375 59.5
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 3.4e-83 312.8 351 56.7
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 7.6e-83 311.6 341 55.1
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 9.9e-83 311.2 350 55.1
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 6.0e-80 302.0 300 60.7
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.7e-79 300.4 345 54.8
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 1.1e-78 297.7 380 50.8
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.5e-78 297.4 340 54.7
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.5e-78 297.4 251 66.9
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 9.6e-78 294.7 354 54.5
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 3.1e-76 289.7 356 53.7
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 9.3e-73 278.1 326 54.6
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 7.9e-64 248.4 350 47.1
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.1e-62 244.6 354 48.9
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 5.3e-60 235.7 315 51.1
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 5.8e-59 232.3 201 65.2
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 5.8e-59 232.3 234 59.0
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.0e-58 231.5 353 49.0
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 7.9e-56 221.9 230 57.0
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 8.7e-55 218.4 195 65.1
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 1.8e-52 210.7 137 78.8
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 2.9e-50 203.4 331 43.2
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 7.2e-41 172.2 234 49.1
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 9.4e-41 171.8 203 54.2
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 2.6e-38 163.7 135 68.1
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 4.5e-35 152.9 189 51.9
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 3.2e-33 146.7 115 69.6
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 7.2e-33 145.6 98 73.5
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 6.7e-31 139.0 295 35.6
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 3.1e-28 130.2 378 32.0
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 4.5e-27 126.3 299 34.8
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.9e-26 123.6 235 39.6
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.5e-25 120.6 238 38.7
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 1.5e-22 111.3 190 42.6
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 8.2e-21 105.5 370 29.5
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 3.5e-19 100.1 94 58.5
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 7.7e-19 99.0 223 39.9
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 5.0e-18 96.3 292 33.9
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 5.7e-14 82.8 121 43.8
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 6.3e-13 79.3 76 57.9
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 6.3e-13 79.3 98 44.9
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 1.8e-12 77.8 322 28.6
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.9e-09 67.8 47 74.5
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 2.1e-08 64.3 121 43.0
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 2.8e-08 63.9 186 33.3
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 8.0e-08 62.4 71 54.9
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 1.4e-07 61.6 81 51.9
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 1.8e-07 61.2 140 35.0
FvH4_4g27140 Fragaria vesca HOM05D063885 ORTHO05D046237 7.5e-06 55.8 39 74.4


User provided reference genes

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