Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 3.1e-59 231.5 110 100.0
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.7e-49 199.1 102 91.2
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.3e-49 198.7 102 90.2
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 2.1e-47 192.2 105 84.8
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 3.6e-47 191.4 102 88.2
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.6e-47 191.4 105 82.9
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 3.6e-47 191.4 102 87.3
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.4e-46 189.5 105 84.8
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.8e-46 189.1 102 86.3
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 1.8e-46 189.1 105 81.9
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 1.8e-46 189.1 105 81.9
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.3e-46 188.7 102 87.3
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 3.0e-46 188.3 105 83.8
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.0e-46 188.3 102 86.3
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.0e-46 188.3 102 87.3
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 4.0e-46 188.0 105 82.9
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 4.0e-46 188.0 102 84.3
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.2e-46 187.6 105 82.9
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 5.2e-46 187.6 102 85.3
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 6.8e-46 187.2 105 84.8
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 6.8e-46 187.2 105 80.0
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.9e-46 186.8 105 81.9
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 8.9e-46 186.8 105 82.9
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.5e-45 186.0 102 86.3
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.5e-45 186.0 102 85.3
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 2.0e-45 185.7 105 80.0
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.0e-45 185.7 105 84.8
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 3.4e-45 184.9 102 82.4
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 3.4e-45 184.9 102 85.3
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.4e-45 184.9 105 82.9
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 3.4e-45 184.9 102 84.3
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 4.4e-45 184.5 102 83.3
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 4.4e-45 184.5 102 85.3
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 4.4e-45 184.5 102 85.3
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 4.4e-45 184.5 102 82.4
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 5.8e-45 184.1 102 84.3
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 5.8e-45 184.1 102 84.3
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 7.5e-45 183.7 105 82.9
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 7.5e-45 183.7 101 84.2
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 9.8e-45 183.3 102 83.3
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.3e-44 183.0 105 81.0
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 1.7e-44 182.6 105 80.0
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 1.7e-44 182.6 105 80.0
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.7e-44 182.6 102 83.3
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.2e-44 182.2 105 80.0
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.9e-44 181.8 105 81.9
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 3.7e-44 181.4 105 81.0
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.7e-44 181.4 102 81.4
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 4.9e-44 181.0 105 80.0
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.9e-44 181.0 105 79.0
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 4.9e-44 181.0 105 80.0
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.4e-44 180.6 102 82.4
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 8.3e-44 180.3 105 80.0
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 8.3e-44 180.3 102 82.4
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 8.3e-44 180.3 105 77.1
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.1e-43 179.9 102 80.4
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.1e-43 179.9 102 80.4
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 1.4e-43 179.5 105 79.0
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.8e-43 179.1 102 82.4
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.4e-43 178.7 102 80.4
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 3.2e-43 178.3 101 83.2
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.2e-43 178.3 102 80.4
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 5.4e-43 177.6 105 79.0
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 7.0e-43 177.2 105 78.1
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 7.0e-43 177.2 102 79.4
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 7.0e-43 177.2 102 79.4
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 9.2e-43 176.8 105 77.1
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 9.2e-43 176.8 102 79.4
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 9.2e-43 176.8 102 82.4
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 9.2e-43 176.8 102 78.4
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 1.2e-42 176.4 102 79.4
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.2e-42 176.4 105 79.0
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 1.2e-42 176.4 100 85.0
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 1.2e-42 176.4 102 80.4
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.2e-42 176.4 102 79.4
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 1.2e-42 176.4 102 77.5
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 1.2e-42 176.4 102 77.5
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.6e-42 176.0 102 78.4
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 1.6e-42 176.0 105 77.1
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.6e-42 176.0 100 83.0
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.6e-42 176.0 102 80.4
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.6e-42 176.0 102 79.4
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 1.6e-42 176.0 105 79.0
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.6e-42 176.0 105 78.1
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.0e-42 175.6 105 77.1
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 2.7e-42 175.3 105 77.1
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.7e-42 175.3 105 79.0
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 3.5e-42 174.9 105 77.1
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 3.5e-42 174.9 102 79.4
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 3.5e-42 174.9 102 77.5
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 3.5e-42 174.9 102 77.5
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 3.5e-42 174.9 102 81.4
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 3.5e-42 174.9 102 77.5
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.5e-42 174.9 105 76.2
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 4.6e-42 174.5 102 79.4
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 6.0e-42 174.1 105 76.2
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 7.8e-42 173.7 102 80.4
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 7.8e-42 173.7 105 78.1
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 1.0e-41 173.3 102 81.4
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 1.3e-41 172.9 102 81.4
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 2.3e-41 172.2 105 74.3
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 2.3e-41 172.2 105 76.2
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 3.0e-41 171.8 105 75.2
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 5.0e-41 171.0 102 77.5
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.9e-40 169.1 130 65.4
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.5e-40 168.7 102 76.5
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.5e-40 168.7 102 74.5
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 3.3e-40 168.3 105 74.3
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.3e-40 167.9 105 79.0
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 5.6e-40 167.5 105 75.2
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 5.6e-40 167.5 102 74.5
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 5.6e-40 167.5 101 75.2
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 7.3e-40 167.2 101 75.2
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 7.3e-40 167.2 105 76.2
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 7.3e-40 167.2 105 76.2
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 1.2e-39 166.4 154 57.1
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 2.1e-39 165.6 102 71.6
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.1e-39 165.6 102 72.5
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 3.6e-39 164.9 102 74.5
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 3.6e-39 164.9 105 74.3
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 4.7e-39 164.5 105 73.3
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 4.7e-39 164.5 102 71.6
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 4.7e-39 164.5 102 76.5
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 1.4e-38 162.9 102 73.5
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.4e-38 162.9 102 75.5
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.3e-38 162.2 105 71.4
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 2.3e-38 162.2 102 73.5
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.0e-38 161.4 102 70.6
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 4.0e-38 161.4 102 71.6
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 3.4e-37 158.3 102 69.6
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 5.8e-37 157.5 99 73.7
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 1.3e-36 156.4 102 72.5
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.9e-36 155.2 105 71.4
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.7e-36 154.8 102 68.6
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 6.4e-36 154.1 102 67.6
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 4.1e-35 151.4 102 64.7
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.7e-34 148.7 102 65.7
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.3e-33 145.6 99 67.7
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 5.0e-33 144.4 87 78.2
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 7.3e-32 140.6 84 75.0
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 7.1e-27 124.0 101 58.4
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 1.2e-26 123.2 101 56.4
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 3.5e-26 121.7 105 51.4
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 6.0e-26 120.9 102 53.9
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.9e-24 115.9 89 69.7
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 1.4e-22 109.8 101 47.5
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 7.6e-21 104.0 62 72.6
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.8e-20 101.7 56 82.1
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 4.9e-20 101.3 60 81.7
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.9e-20 101.3 52 88.5
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 8.4e-20 100.5 70 71.4
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 3.2e-19 98.6 56 83.9
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 2.7e-18 95.5 52 84.6
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 6.0e-18 94.4 53 86.8
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 6.6e-17 90.9 48 87.5
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 6.4e-12 74.3 39 92.3
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.6e-10 69.7 49 71.4
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.6e-10 69.7 49 71.4
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.0e-09 67.0 45 71.1
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.1e-08 63.5 39 74.4


User provided reference genes

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