Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 3.6e-45 184.5 91 100.0
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 1.2e-32 142.9 72 97.2
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 1.6e-24 115.9 72 77.8
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 3.5e-24 114.8 72 76.4
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 6.0e-24 114.0 72 76.4
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 3.7e-21 104.8 72 69.4
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 7.6e-19 97.1 72 63.9
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 1.3e-18 96.3 73 63.0
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 2.2e-18 95.5 73 64.4
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 2.2e-18 95.5 73 67.1
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 5.0e-18 94.4 72 61.1
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 6.5e-18 94.0 70 65.7
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 8.5e-18 93.6 74 64.9
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 8.5e-18 93.6 74 64.9
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 1.1e-17 93.2 72 61.1
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 1.1e-17 93.2 75 62.7
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 1.9e-17 92.4 72 61.1
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.9e-17 92.4 75 64.0
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 3.2e-17 91.7 80 55.0
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 3.2e-17 91.7 72 59.7
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 3.2e-17 91.7 72 62.5
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 5.5e-17 90.9 75 64.0
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 1.2e-16 89.7 75 61.3
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.2e-16 89.7 74 62.2
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.2e-16 89.7 74 62.2
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 1.2e-16 89.7 72 58.3
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 1.6e-16 89.4 70 62.9
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 2.1e-16 89.0 72 59.7
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 2.7e-16 88.6 72 61.1
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 2.7e-16 88.6 73 60.3
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 2.7e-16 88.6 72 58.3
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 3.6e-16 88.2 72 62.5
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 6.1e-16 87.4 72 61.1
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 7.9e-16 87.0 72 61.1
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 7.9e-16 87.0 68 63.2
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 7.9e-16 87.0 72 58.3
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 1.0e-15 86.7 75 58.7
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.4e-15 86.3 70 57.1
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.4e-15 86.3 70 57.1
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 1.4e-15 86.3 72 55.6
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 1.8e-15 85.9 72 58.3
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 1.8e-15 85.9 72 55.6
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 3.0e-15 85.1 69 59.4
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 3.0e-15 85.1 69 59.4
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 3.0e-15 85.1 70 55.7
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 3.0e-15 85.1 72 61.1
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 3.9e-15 84.7 70 58.6
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 3.9e-15 84.7 72 56.9
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 3.9e-15 84.7 69 60.9
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 5.1e-15 84.3 72 55.6
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 6.7e-15 84.0 70 58.6
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 8.8e-15 83.6 71 57.7
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 8.8e-15 83.6 70 58.6
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 8.8e-15 83.6 70 57.1
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 1.1e-14 83.2 73 58.9
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 1.9e-14 82.4 69 53.6
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 1.9e-14 82.4 73 60.3
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 4.3e-14 81.3 70 55.7
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 4.3e-14 81.3 69 58.0
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 7.4e-14 80.5 70 55.7
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 9.7e-14 80.1 72 56.9
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 9.7e-14 80.1 70 55.7
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 1.3e-13 79.7 70 54.3
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.2e-13 79.0 70 52.9
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 2.8e-13 78.6 72 51.4
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 2.8e-13 78.6 70 57.1
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 2.8e-13 78.6 72 55.6
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 3.7e-13 78.2 70 52.9
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 4.8e-13 77.8 70 54.3
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 4.8e-13 77.8 70 57.1
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 4.8e-13 77.8 72 54.2
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 6.3e-13 77.4 73 54.8
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 1.4e-12 76.3 73 57.5
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 1.4e-12 76.3 75 50.7
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 1.8e-12 75.9 77 55.8
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 5.3e-12 74.3 64 56.2
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 6.9e-12 73.9 77 51.9
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 6.9e-12 73.9 73 53.4
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 6.9e-12 73.9 73 52.1
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 9.1e-12 73.6 70 51.4
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 1.2e-11 73.2 64 53.1
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 5.9e-11 70.9 72 52.8
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 1.0e-10 70.1 72 50.0
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 1.0e-10 70.1 72 50.0
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 1.3e-10 69.7 75 46.7
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 2.2e-10 68.9 75 40.0
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 3.8e-10 68.2 66 53.0
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 5.0e-10 67.8 72 55.6
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.0e-10 67.8 58 62.1
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 6.5e-10 67.4 72 50.0
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 6.5e-10 67.4 72 50.0
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 1.1e-09 66.6 72 51.4
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.4e-09 66.2 58 60.3
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 1.9e-09 65.9 72 50.0
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 5.5e-09 64.3 72 50.0
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 5.5e-09 64.3 72 48.6
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 5.5e-09 64.3 72 48.6
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 9.4e-09 63.5 72 44.4
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 3.6e-08 61.6 72 47.2
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 3.6e-08 61.6 72 44.4
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 6.1e-08 60.8 38 78.9
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 7.9e-08 60.5 72 44.4
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 7.9e-08 60.5 72 44.4
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 8.8e-07 57.0 54 46.3
Psat0s1013g0040 Pisum sativum HOM05D006028 ORTHO05D007784 5.7e-06 54.3 54 50.0


User provided reference genes

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