Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 1.7e-117 426.0 213 100.0
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.2e-107 393.3 212 90.6
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 1.1e-103 380.2 212 87.3
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 2.4e-103 379.0 206 88.3
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 5.3e-103 377.9 211 86.3
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 9.0e-103 377.1 211 87.7
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 1.2e-102 376.7 206 87.9
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.5e-102 376.3 206 88.8
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 5.8e-102 374.4 213 86.9
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 7.6e-102 374.0 210 85.7
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 9.9e-102 373.6 210 84.3
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 1.3e-101 373.2 211 85.3
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 2.9e-101 372.1 213 86.4
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 6.4e-101 370.9 211 82.9
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 8.4e-101 370.5 208 83.7
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.1e-100 370.2 213 85.9
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 1.4e-100 369.8 206 85.9
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 1.9e-100 369.4 206 86.4
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 4.2e-100 368.2 213 82.6
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 7.1e-100 367.5 205 86.8
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 3.5e-99 365.2 206 83.5
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 3.5e-99 365.2 206 85.0
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.5e-99 365.2 210 84.3
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 6.0e-99 364.4 212 81.6
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 6.0e-99 364.4 210 83.3
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 1.0e-98 363.6 205 84.9
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 1.3e-98 363.2 210 83.8
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 1.3e-98 363.2 209 82.3
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 2.3e-98 362.5 210 83.3
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 3.9e-98 361.7 215 82.3
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 6.6e-98 360.9 211 82.9
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 6.6e-98 360.9 209 83.7
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 8.7e-98 360.5 208 83.2
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 8.7e-98 360.5 205 84.9
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 8.7e-98 360.5 213 82.2
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 8.7e-98 360.5 205 85.4
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.1e-97 360.1 209 82.3
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 1.5e-97 359.8 206 83.5
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.9e-97 359.4 209 83.3
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 4.3e-97 358.2 211 80.1
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 7.3e-97 357.5 206 83.0
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 2.8e-96 355.5 212 80.7
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 3.6e-96 355.1 212 80.2
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 3.6e-96 355.1 211 81.0
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 4.8e-96 354.8 209 82.3
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 6.2e-96 354.4 209 81.3
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 6.2e-96 354.4 205 81.0
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 1.1e-95 353.6 209 78.9
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 1.4e-95 353.2 209 82.3
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 2.4e-95 352.4 209 81.8
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 4.0e-95 351.7 209 80.9
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 6.9e-95 350.9 212 79.2
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 6.9e-95 350.9 233 74.7
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 2.0e-94 349.4 208 81.2
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 2.0e-94 349.4 208 81.7
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 3.4e-94 348.6 211 79.1
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 4.5e-94 348.2 212 78.3
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 4.5e-94 348.2 208 81.2
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 4.5e-94 348.2 208 81.2
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 4.5e-94 348.2 208 81.2
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 4.5e-94 348.2 208 81.2
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 4.5e-94 348.2 216 78.2
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 5.8e-94 347.8 208 81.2
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 5.8e-94 347.8 208 81.7
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 5.8e-94 347.8 209 78.9
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 7.6e-94 347.4 209 78.5
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 9.9e-94 347.1 208 79.8
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 9.9e-94 347.1 208 80.8
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 2.2e-93 345.9 208 80.8
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 2.2e-93 345.9 203 83.3
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 2.9e-93 345.5 208 80.8
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 3.8e-93 345.1 208 80.3
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 4.9e-93 344.7 206 81.6
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 6.4e-93 344.4 209 78.5
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.4e-92 343.2 209 78.5
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 3.2e-92 342.0 208 79.3
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 4.2e-92 341.7 213 77.9
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 5.4e-92 341.3 205 81.0
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 7.1e-92 340.9 206 80.6
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 9.3e-92 340.5 209 77.0
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 1.6e-91 339.7 211 83.4
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 6.0e-91 337.8 210 78.1
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 6.7e-90 334.3 209 77.5
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 6.7e-90 334.3 209 76.1
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 7.4e-89 330.9 205 76.6
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 6.2e-88 327.8 215 74.9
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 1.8e-87 326.2 206 76.2
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 3.1e-87 325.5 211 78.2
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 3.1e-87 325.5 213 74.2
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 9.0e-87 323.9 186 81.2
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 1.5e-86 323.2 209 75.6
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 2.7e-83 312.4 203 70.9
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 1.3e-82 310.1 212 69.3
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 5.1e-82 308.1 178 85.4
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 1.5e-81 306.6 192 82.3
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 9.6e-81 303.9 214 69.2
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 1.2e-78 297.0 176 80.7
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.5e-78 296.6 169 82.2
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 2.6e-78 295.8 203 67.0
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 3.8e-77 292.0 166 81.9
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 8.4e-77 290.8 203 69.0
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 1.4e-76 290.0 206 70.9
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 7.2e-76 287.7 203 69.0
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 4.6e-75 285.0 203 68.5
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.0e-69 267.3 157 82.8
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 1.4e-68 263.5 256 54.3
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 2.3e-66 256.1 157 79.0
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 2.2e-64 249.6 159 76.1
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 8.5e-61 237.7 193 62.2
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 7.9e-59 231.1 134 81.3
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 8.2e-56 221.1 211 52.1
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 3.8e-53 212.2 182 56.0
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.6e-51 206.8 208 50.5
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 8.0e-51 204.5 157 65.6
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 1.7e-48 196.8 142 69.0
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 2.4e-47 193.0 127 72.4
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 2.4e-47 193.0 127 72.4
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 8.5e-45 184.5 211 48.3
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 5.4e-39 165.2 95 83.2
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.0e-37 161.0 223 41.7
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.0e-37 161.0 223 41.7
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 4.4e-25 119.0 195 35.4
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 2.0e-22 110.2 104 58.7
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 4.6e-22 109.0 89 61.8
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 6.2e-19 98.6 64 67.2
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.5e-17 94.0 53 83.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.5e-17 94.0 52 84.6
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 4.4e-17 92.4 73 63.0
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 8.3e-16 88.2 53 81.1
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 5.4e-15 85.5 57 71.9
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 1.2e-14 84.3 65 64.6
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 4.7e-11 72.4 47 74.5
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 1.8e-10 70.5 50 66.0
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.2e-09 67.8 39 84.6
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 3.4e-09 66.2 134 38.1
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 8.3e-08 61.6 39 82.1
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.4e-07 60.8 33 87.9
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 1.9e-07 60.5 40 70.0
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 5.4e-07 58.9 36 66.7


User provided reference genes

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