Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 0.0e+00 1567.0 823 100.0
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 0.0e+00 1440.2 818 94.0
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 2.4e-260 902.5 861 62.3
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 4.3e-238 828.6 871 58.2
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 4.5e-235 818.5 865 58.0
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.9e-225 786.6 977 51.6
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 5.6e-177 625.5 863 46.9
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 9.5e-177 624.8 883 47.1
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 1.2e-176 624.4 879 46.6
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 3.6e-176 622.9 860 46.2
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 2.1e-163 580.5 892 44.6
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 8.1e-160 568.5 873 44.3
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 2.6e-158 563.5 894 44.4
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 4.9e-157 559.3 811 45.9
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 8.4e-149 531.9 870 44.1
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 6.2e-144 515.8 936 39.2
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 4.0e-143 513.1 697 48.8
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 6.9e-143 512.3 877 43.6
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 1.5e-142 511.1 895 40.4
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.0e-142 510.8 861 43.8
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 8.4e-141 505.4 896 39.7
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 4.2e-140 503.1 863 42.9
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 2.7e-139 500.4 914 40.8
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 7.9e-139 498.8 904 40.5
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.3e-133 481.5 863 42.4
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 7.9e-131 472.2 890 38.9
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 8.7e-130 468.8 909 38.3
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.1e-129 468.4 898 38.4
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 3.3e-129 466.8 879 40.8
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 2.7e-123 447.2 896 38.6
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.6e-123 446.8 986 37.4
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 6.7e-122 442.6 899 40.0
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 3.3e-121 440.3 865 38.7
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 2.2e-120 437.6 876 41.9
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 1.8e-111 407.9 899 35.5
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 4.1e-111 406.8 863 39.3
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 2.0e-110 404.4 866 38.8
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 3.5e-110 403.7 876 39.3
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 2.2e-109 401.0 864 37.2
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 2.2e-109 401.0 882 38.5
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 6.5e-109 399.4 872 39.3
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 6.5e-109 399.4 858 39.2
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.6e-107 394.8 908 36.1
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.0e-106 392.1 1035 32.5
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 5.7e-105 386.3 854 36.9
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 5.7e-105 386.3 871 37.3
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 5.7e-105 386.3 1038 32.9
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 8.2e-104 382.5 884 34.5
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 5.9e-102 376.3 916 34.3
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 5.5e-100 369.8 600 43.3
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.0e-98 364.0 983 33.9
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.6e-97 360.9 850 36.2
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.3e-96 358.6 850 35.9
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 4.5e-94 350.1 899 31.8
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.9e-92 344.7 897 33.1
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 2.6e-89 334.3 918 33.8
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 3.4e-89 334.0 778 35.9
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 4.4e-89 333.6 860 33.4
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 8.3e-88 329.3 871 34.2
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 7.0e-87 326.2 828 33.3
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 1.3e-85 322.0 853 32.7
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 2.9e-85 320.9 852 32.9
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.8e-85 320.5 972 30.8
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 5.0e-85 320.1 871 33.5
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 7.3e-84 316.2 631 38.2
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 6.8e-82 309.7 853 31.7
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 2.6e-81 307.8 848 33.7
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 9.8e-81 305.8 875 31.4
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 8.3e-80 302.8 970 29.9
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 5.4e-79 300.1 949 32.3
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 1.2e-78 298.9 845 32.3
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 5.0e-77 293.5 885 32.1
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 1.1e-76 292.4 956 31.6
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 9.5e-76 289.3 868 32.4
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 2.0e-73 281.6 833 33.7
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 4.4e-73 280.4 863 29.9
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 5.8e-73 280.0 952 30.0
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 1.1e-71 275.8 920 29.1
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 2.0e-70 271.6 880 31.4
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 6.6e-69 266.5 302 54.0
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.2e-67 262.3 835 30.3
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.2e-65 255.8 899 28.7
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 7.5e-65 253.1 843 29.8
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 3.5e-62 244.2 837 28.8
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 3.9e-61 240.7 894 30.3
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 4.3e-60 237.3 704 30.7
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 4.0e-58 230.7 586 34.5
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.5e-57 228.8 495 40.4
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 4.4e-57 227.3 871 29.0
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 7.6e-57 226.5 695 32.8
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 6.4e-56 223.4 847 29.3
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 5.4e-55 220.3 892 26.9
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 6.0e-54 216.9 877 29.4
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 5.6e-52 210.3 890 27.0
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 1.6e-51 208.8 859 28.9
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 3.6e-51 207.6 853 28.7
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 2.2e-48 198.4 930 27.6
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 2.1e-46 191.8 903 27.0
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 3.5e-46 191.0 732 29.9
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 6.0e-46 190.3 653 32.2
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 2.3e-45 188.3 608 32.6
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 3.9e-45 187.6 878 27.0
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 8.7e-45 186.4 653 31.9
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.2e-40 171.8 416 37.5
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 3.8e-40 171.0 877 26.9
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 3.8e-40 171.0 231 42.4
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 4.2e-39 167.5 869 27.8
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 7.6e-33 146.7 862 26.2
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 2.9e-32 144.8 603 28.7
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 3.2e-31 141.4 871 26.3
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 5.5e-31 140.6 865 26.0
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 7.9e-30 136.7 123 62.6
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 1.3e-29 136.0 859 26.2
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 1.1e-28 132.9 861 24.2
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.3e-28 131.3 559 25.4
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 4.3e-28 131.0 863 25.0
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 4.3e-28 131.0 158 46.2
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 7.4e-28 130.2 863 25.0
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 7.4e-28 130.2 864 25.5
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 1.4e-26 125.9 848 25.2
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 2.4e-26 125.2 866 25.1
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 2.6e-25 121.7 862 24.7
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 1.0e-24 119.8 855 24.9
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.8e-24 117.9 220 37.3
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 5.5e-23 114.0 186 40.3
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 3.0e-21 108.2 913 23.3
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 2.2e-19 102.1 333 30.9
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 3.7e-19 101.3 775 22.2
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 7.6e-17 93.6 504 25.4
Lalb_Chr16g0388151 Lupinus albus HOM05D005593 ORTHO05D006515 8.7e-13 80.1 101 43.6
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.8e-11 75.1 886 22.5
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 2.4e-10 72.0 956 22.1
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 6.9e-10 70.5 933 20.7
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 1.2e-09 69.7 267 29.6
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 1.5e-09 69.3 957 21.3
CDE02G1606 Ceratophyllum demersum HOM05D005593 ORTHO05D006515 2.0e-09 68.9 273 24.2
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 2.0e-09 68.9 834 21.6
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 3.4e-09 68.2 832 21.3
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 4.5e-09 67.8 908 23.5
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 5.9e-09 67.4 840 21.1
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.0e-08 66.6 939 21.9
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 1.7e-08 65.9 216 31.9
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 3.8e-08 64.7 223 28.7
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 5.0e-08 64.3 887 22.8
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 6.5e-08 63.9 269 27.5
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 8.5e-08 63.5 805 23.2
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.1e-07 63.2 841 22.6
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 1.1e-07 63.2 958 21.4
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 1.9e-07 62.4 230 28.3
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.9e-07 62.4 303 27.1
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 3.2e-07 61.6 214 27.1
Actinidia20383 Actinidia chinensis HOM05D005593 ORTHO05D006515 3.2e-07 61.6 45 60.0
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 3.2e-07 61.6 211 30.8
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 3.2e-07 61.6 308 27.3
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 5.5e-07 60.8 845 21.3
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 7.2e-07 60.5 43 67.4
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.2e-06 59.7 311 25.7
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 1.2e-06 59.7 222 27.0
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 3.6e-06 58.2 869 21.7
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 7.9e-06 57.0 312 26.0
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 7.9e-06 57.0 312 26.0
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 7.9e-06 57.0 197 28.9


User provided reference genes

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