Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p043240 Quercus lobata HOM05D007452 ORTHO05D009375 2.2e-82 308.9 158 100.0
QL02p044487 Quercus lobata HOM05D007452 ORTHO05D009375 6.1e-80 300.8 155 99.4
Haze_25788 Corylus avellana HOM05D007452 ORTHO05D009375 4.4e-54 214.9 133 84.2
Prupe.7G224900 Prunus persica HOM05D007452 ORTHO05D009375 6.5e-50 201.1 135 77.0
MD15G1192300 Malus domestica HOM05D007452 ORTHO05D009375 5.5e-49 198.0 132 77.3
FvH4_1g05720 Fragaria vesca HOM05D007452 ORTHO05D009375 7.2e-49 197.6 131 77.9
MD02G1057900 Malus domestica HOM05D007452 ORTHO05D009375 9.4e-49 197.2 135 75.6
COL.COLO4_34802 Corchorus olitorius HOM05D007452 ORTHO05D009375 1.2e-48 196.8 133 77.4
Cfa003221 Carpinus fangiana HOM05D007452 ORTHO05D009375 1.6e-48 196.4 123 82.9
PGR102G0901 Punica granatum HOM05D007452 ORTHO05D009375 1.6e-48 196.4 132 77.3
FAN28G0080 Fragaria x ananassa HOM05D007452 ORTHO05D009375 2.1e-48 196.1 131 76.3
FAN26G0145 Fragaria x ananassa HOM05D007452 ORTHO05D009375 2.7e-48 195.7 131 76.3
FAN19G0597 Fragaria x ananassa HOM05D007452 ORTHO05D009375 3.6e-48 195.3 131 77.1
FAN26G2311 Fragaria x ananassa HOM05D007452 ORTHO05D009375 3.6e-48 195.3 131 75.6
Thecc.09G105200 Theobroma cacao HOM05D007452 ORTHO05D009375 1.0e-47 193.7 133 77.4
RcHm_v2.0_Chr2g0091331 Rosa chinensis HOM05D007452 ORTHO05D009375 2.6e-46 189.1 128 76.6
Cc06_g10100 Coffea canephora HOM05D007452 ORTHO05D009375 4.4e-46 188.3 129 75.2
Sed0023851 Sechium edule HOM05D007452 ORTHO05D009375 5.7e-46 188.0 128 76.6
CiPaw.04G161200 Carya illinoinensis HOM05D007452 ORTHO05D009375 9.8e-46 187.2 126 77.8
PGSC0003DMG400023982 Solanum tuberosum HOM05D007452 ORTHO05D009375 1.3e-45 186.8 129 72.1
Gohir.D06G063500 Gossypium hirsutum HOM05D007452 ORTHO05D009375 1.7e-45 186.4 133 75.2
Nitab4.5_0002165g0070 Nicotiana tabacum HOM05D007452 ORTHO05D009375 1.7e-45 186.4 129 72.1
Nitab4.5_0003331g0020 Nicotiana tabacum HOM05D007452 ORTHO05D009375 2.2e-45 186.0 129 72.1
TWI34G0936 Tripterygium wilfordii HOM05D007452 ORTHO05D009375 2.8e-45 185.7 134 72.4
Solyc11g006870.1 Solanum lycopersicum HOM05D007452 ORTHO05D009375 6.3e-45 184.5 129 70.5
Sopen11g002770 Solanum pennellii HOM05D007452 ORTHO05D009375 6.3e-45 184.5 129 70.5
Ciclev10009852m.g Citrus clementina HOM05D007452 ORTHO05D009375 1.8e-44 183.0 133 71.4
MELO3C024705.2 Cucumis melo HOM05D007452 ORTHO05D009375 4.1e-44 181.8 128 74.2
Nitab4.5_0000066g0140 Nicotiana tabacum HOM05D007452 ORTHO05D009375 4.1e-44 181.8 129 69.8
CAN.G645.18 Capsicum annuum HOM05D007452 ORTHO05D009375 5.4e-44 181.4 130 70.8
Oeu002255.1 Olea europaea HOM05D007452 ORTHO05D009375 1.6e-43 179.9 131 72.5
vmacro06236 Vaccinium macrocarpon HOM05D007452 ORTHO05D009375 1.6e-43 179.9 129 70.5
Gorai.010G074100 Gossypium raimondii HOM05D007452 ORTHO05D009375 1.0e-42 177.2 123 75.6
GSVIVG01015344001 Vitis vinifera HOM05D007452 ORTHO05D009375 1.7e-42 176.4 133 72.2
Atru.chr7.1416 Acer truncatum HOM05D007452 ORTHO05D009375 2.9e-42 175.6 140 66.4
Phvul.002G311100 Phaseolus vulgaris HOM05D007452 ORTHO05D009375 2.9e-42 175.6 126 73.8
Glyma.08G035800 Glycine max HOM05D007452 ORTHO05D009375 6.5e-42 174.5 126 73.8
PSO210G5570 Papaver somniferum HOM05D007452 ORTHO05D009375 1.5e-41 173.3 130 69.2
HanXRQChr10g0318511 Helianthus annuus HOM05D007452 ORTHO05D009375 2.5e-41 172.6 128 70.3
Nn2g11650 Nelumbo nucifera HOM05D007452 ORTHO05D009375 3.2e-41 172.2 132 68.9
MSTRG.19570 Avicennia marina HOM05D007452 ORTHO05D009375 4.2e-41 171.8 129 72.1
Duzib187G0798 Durio zibethinus HOM05D007452 ORTHO05D009375 4.2e-41 171.8 121 75.2
Potri.018G084400 Populus trichocarpa HOM05D007452 ORTHO05D009375 5.5e-41 171.4 136 67.6
Dinv41642 Davidia involucrata HOM05D007452 ORTHO05D009375 7.2e-41 171.0 120 74.2
Gohir.A06G065000 Gossypium hirsutum HOM05D007452 ORTHO05D009375 7.2e-41 171.0 123 73.2
Lsat_1_v5_gn_5_147400 Lactuca sativa HOM05D007452 ORTHO05D009375 9.5e-41 170.6 130 69.2
TAR636G3481 Trochodendron aralioides HOM05D007452 ORTHO05D009375 1.2e-40 170.2 132 68.2
Sabra18G0072700 Salix brachista HOM05D007452 ORTHO05D009375 2.1e-40 169.5 135 67.4
THA.LOC104799068 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 2.7e-40 169.1 135 66.7
THA.LOC104808980 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 2.7e-40 169.1 135 66.7
CARHR193330 Cardamine hirsuta HOM05D007452 ORTHO05D009375 3.6e-40 168.7 131 67.2
Ca_17318_v3 Cicer arietinum L. HOM05D007452 ORTHO05D009375 6.1e-40 167.9 131 67.2
SalBow6G2888 Salvia bowleyana HOM05D007452 ORTHO05D009375 6.1e-40 167.9 128 71.1
AUR62021449 Chenopodium quinoa HOM05D007452 ORTHO05D009375 8.0e-40 167.5 130 65.4
Migut.J01126 Erythranthe guttata HOM05D007452 ORTHO05D009375 1.0e-39 167.2 127 70.9
Eucgr.C01281 Eucalyptus grandis HOM05D007452 ORTHO05D009375 1.0e-39 167.2 134 69.4
ClCG06G008870 Citrullus lanatus HOM05D007452 ORTHO05D009375 1.4e-39 166.8 114 75.4
SGA_v2.0_scaffold10G05148 Striga asiatica HOM05D007452 ORTHO05D009375 1.4e-39 166.8 123 72.4
Medtr8g102920 Medicago truncatula HOM05D007452 ORTHO05D009375 1.8e-39 166.4 129 66.7
Peaxi162Scf00539g00066 Petunia axillaris HOM05D007452 ORTHO05D009375 1.8e-39 166.4 113 70.8
AL6G31080 Arabidopsis lyrata HOM05D007452 ORTHO05D009375 5.2e-39 164.9 132 63.6
AT5G19570 Arabidopsis thaliana HOM05D007452 ORTHO05D009375 8.8e-39 164.1 131 64.1
Thhalv10014912m.g Eutrema salsugineum HOM05D007452 ORTHO05D009375 1.2e-38 163.7 132 62.1
Psat7g014560 Pisum sativum HOM05D007452 ORTHO05D009375 1.2e-38 163.7 131 66.4
Ah.09g230860 Amaranthus hybridus HOM05D007452 ORTHO05D009375 1.5e-38 163.3 133 64.7
unitig_899.g15033 Utricularia gibba HOM05D007452 ORTHO05D009375 2.6e-38 162.5 129 69.0
Lalb_Chr05g0223071 Lupinus albus HOM05D007452 ORTHO05D009375 4.4e-38 161.8 122 67.2
Rhsim03G0239200 Rhododendron simsii HOM05D007452 ORTHO05D009375 4.4e-38 161.8 115 72.2
Glyma.05G228800 Glycine max HOM05D007452 ORTHO05D009375 2.2e-37 159.5 132 66.7
BcaC03g13689 Brassica carinata HOM05D007452 ORTHO05D009375 2.8e-37 159.1 131 60.3
BNapus_Darmor_BZH_scaffold_38p02290 Brassica napus HOM05D007452 ORTHO05D009375 2.8e-37 159.1 131 60.3
Aqoxy7G01521 Aquilegia oxysepala HOM05D007452 ORTHO05D009375 3.7e-37 158.7 128 64.8
A02p05660 Brassica napus HOM05D007452 ORTHO05D009375 3.7e-37 158.7 136 61.0
BcaB05g23392 Brassica carinata HOM05D007452 ORTHO05D009375 4.9e-37 158.3 135 59.3
DCAR_012055 Daucus carota HOM05D007452 ORTHO05D009375 4.9e-37 158.3 128 64.1
BraA02t05518Z Brassica rapa HOM05D007452 ORTHO05D009375 1.1e-36 157.1 135 60.0
HPP92_008140 Vanilla planifolia HOM05D007452 ORTHO05D009375 2.4e-36 156.0 129 62.8
Carub.0006s1792 Capsella rubella HOM05D007452 ORTHO05D009375 3.1e-36 155.6 132 59.8
ATR0315G055 Amborella trichopoda HOM05D007452 ORTHO05D009375 9.2e-36 154.1 125 63.2
Manes.03G024500 Manihot esculenta HOM05D007452 ORTHO05D009375 1.2e-35 153.7 121 66.9
Sopen08g027980 Solanum pennellii HOM05D007452 ORTHO05D009375 7.7e-35 151.0 123 65.0
Aa31LG5G13720 Aethionema arabicum HOM05D007452 ORTHO05D009375 2.3e-34 149.4 113 66.4
Sc08g0007740 Simmondsia chinensis HOM05D007452 ORTHO05D009375 8.6e-34 147.5 132 58.3
CiPaw.08G085300 Carya illinoinensis HOM05D007452 ORTHO05D009375 2.5e-33 146.0 121 68.6
CsaV3_1G020810 Cucumis sativus L. HOM05D007452 ORTHO05D009375 4.3e-33 145.2 149 59.1
Os05g0188300 Oryza sativa ssp. japonica HOM05D007452 ORTHO05D009375 5.6e-33 144.8 126 62.7
BolC2t06971H Brassica oleracea HOM05D007452 ORTHO05D009375 1.2e-32 143.7 127 57.5
HanXRQChr03g0087651 Helianthus annuus HOM05D007452 ORTHO05D009375 2.8e-32 142.5 121 63.6
CDE02G1573 Ceratophyllum demersum HOM05D007452 ORTHO05D009375 4.7e-32 141.7 130 58.5
Cfa001992 Carpinus fangiana HOM05D007452 ORTHO05D009375 1.4e-31 140.2 95 76.8
EL10Ac8g18425 Beta vulgaris HOM05D007452 ORTHO05D009375 6.8e-31 137.9 108 63.0
MBI04_g14927_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 6.8e-31 137.9 112 64.3
CSS0004194 Camellia sinensis var. sinensis HOM05D007452 ORTHO05D009375 3.4e-30 135.6 124 60.5
Zm00001eb089090 Zea mays HOM05D007452 ORTHO05D009375 1.3e-29 133.7 126 57.9
SEGI_20837 Sequoiadendron giganteum HOM05D007452 ORTHO05D009375 4.1e-28 128.6 132 55.3
HanXRQChr02g0047631 Helianthus annuus HOM05D007452 ORTHO05D009375 1.6e-24 116.7 109 63.3
Pp3c5_13600 Physcomitrium patens HOM05D007452 ORTHO05D009375 1.3e-21 107.1 126 46.8
SMO119G0523 Selaginella moellendorffii HOM05D007452 ORTHO05D009375 1.1e-20 104.0 123 47.2
AagrBONN_evm.TU.Sc2ySwM_117.3226 Anthoceros agrestis HOM05D007452 ORTHO05D009375 1.1e-17 94.0 134 44.0
Mapoly0005s0019 Marchantia polymorpha HOM05D007452 ORTHO05D009375 9.5e-17 90.9 128 39.8
MBI12_g37480_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 7.3e-09 64.7 51 70.6
MBI05_g24448_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 1.8e-07 60.1 68 54.4


User provided reference genes

Program Settings