Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 2.8e-135 485.7 338 100.0
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 1.7e-95 353.6 311 73.3
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 3.8e-95 352.4 311 71.7
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 4.6e-93 345.5 313 70.6
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 7.8e-93 344.7 311 73.0
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 5.6e-91 338.6 311 73.6
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.8e-90 336.3 311 81.0
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 3.4e-88 329.3 311 69.1
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 9.9e-88 327.8 337 64.4
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 1.4e-86 323.9 311 69.1
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 9.3e-86 321.2 311 69.1
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 1.7e-84 317.0 311 68.5
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 2.3e-84 316.6 309 69.6
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 2.3e-84 316.6 311 69.1
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 3.0e-84 316.2 311 69.5
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 3.9e-84 315.8 311 66.9
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 4.3e-83 312.4 310 67.4
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 2.1e-82 310.1 294 78.9
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 2.8e-82 309.7 311 65.9
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 3.6e-82 309.3 311 67.8
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 6.2e-82 308.5 310 65.5
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 8.1e-82 308.1 309 67.3
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 8.1e-82 308.1 311 75.9
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 3.1e-81 306.2 310 66.5
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 4.0e-81 305.8 309 66.0
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 4.0e-81 305.8 309 66.0
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 9.0e-81 304.7 310 66.5
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 2.0e-80 303.5 310 66.5
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 2.0e-80 303.5 337 64.1
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 2.6e-80 303.1 310 65.5
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 3.4e-80 302.8 310 66.5
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 1.7e-79 300.4 310 65.5
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 2.2e-79 300.1 310 64.5
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 2.2e-79 300.1 311 65.3
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.9e-79 299.7 341 61.0
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 2.9e-79 299.7 341 61.0
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 2.9e-79 299.7 327 63.9
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 4.9e-79 298.9 320 65.9
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 1.9e-78 297.0 310 65.5
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 1.9e-78 297.0 310 65.5
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 4.2e-78 295.8 327 63.6
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 7.1e-78 295.0 310 65.5
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 7.1e-78 295.0 356 58.7
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 1.6e-77 293.9 311 66.9
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 3.5e-77 292.7 310 63.9
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 3.5e-77 292.7 296 78.4
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 7.9e-77 291.6 311 62.7
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 7.9e-77 291.6 311 73.0
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 1.3e-76 290.8 310 64.2
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 3.9e-76 289.3 320 64.7
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 3.9e-76 289.3 327 60.2
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 8.7e-76 288.1 363 49.0
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.9e-75 287.0 311 64.0
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 3.3e-75 286.2 310 62.6
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 4.8e-74 282.3 338 60.7
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 6.2e-74 282.0 322 69.9
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 8.1e-74 281.6 309 64.7
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 1.1e-73 281.2 311 64.3
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.4e-73 280.0 311 62.7
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 5.8e-72 275.4 310 64.2
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 7.6e-72 275.0 310 61.3
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 1.7e-71 273.9 302 64.6
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.9e-71 273.1 337 59.9
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.8e-71 272.7 311 63.7
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.8e-71 272.7 311 62.1
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 3.8e-71 272.7 310 62.6
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.9e-71 272.3 311 63.7
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.9e-71 272.3 311 63.7
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 8.4e-71 271.6 311 63.3
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 8.4e-71 271.6 311 61.4
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 1.1e-70 271.2 310 62.3
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.4e-70 270.8 311 61.4
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 1.4e-70 270.8 311 61.7
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 2.4e-70 270.0 311 61.7
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 7.1e-70 268.5 333 58.6
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 1.6e-69 267.3 329 58.1
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.6e-69 267.3 311 61.1
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 2.7e-69 266.5 284 65.5
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 2.7e-69 266.5 329 58.1
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 7.9e-69 265.0 311 61.7
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 2.3e-68 263.5 311 60.1
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 3.0e-68 263.1 310 60.3
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 3.0e-68 263.1 310 60.3
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 3.9e-68 262.7 311 61.1
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 5.1e-68 262.3 311 59.5
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 1.9e-67 260.4 311 60.1
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 7.4e-67 258.5 310 59.7
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 1.6e-66 257.3 327 58.1
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 2.1e-66 256.9 311 60.1
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 3.7e-66 256.1 216 63.0
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.8e-66 255.8 311 59.5
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 4.5e-64 249.2 310 66.1
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 5.8e-64 248.8 333 56.2
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 1.3e-63 247.7 309 59.2
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 1.3e-63 247.7 309 59.5
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 2.2e-63 246.9 227 60.4
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 3.8e-63 246.1 309 58.3
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 6.5e-63 245.4 283 62.9
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 8.4e-63 245.0 308 59.7
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 1.9e-62 243.8 308 58.1
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 2.5e-62 243.4 228 61.4
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 4.2e-62 242.7 288 72.6
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 5.5e-62 242.3 310 65.5
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 9.3e-62 241.5 306 66.7
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 2.3e-60 236.9 311 55.9
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 6.7e-60 235.3 311 56.9
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 6.7e-60 235.3 337 52.5
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 1.5e-59 234.2 315 58.7
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 2.5e-59 233.4 216 59.7
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.5e-59 233.4 302 59.9
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 2.5e-59 233.4 315 59.0
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 1.3e-58 231.1 311 55.9
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.7e-58 229.6 285 60.4
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.4e-57 227.6 285 60.7
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 4.1e-57 226.1 309 54.4
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 5.3e-57 225.7 334 59.0
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 2.2e-55 220.3 285 57.9
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 5.0e-55 219.2 309 55.3
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 9.3e-54 214.9 285 58.6
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 9.3e-54 214.9 306 53.9
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 5.7e-51 205.7 309 52.4
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 3.1e-49 199.9 177 59.3
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-48 197.6 177 58.8
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.9e-46 190.7 173 63.6
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 5.5e-46 189.1 310 52.9
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 7.2e-46 188.7 184 57.6
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 3.9e-44 183.0 216 50.5
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-42 177.9 204 51.0
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 1.4e-41 174.5 216 49.1
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.8e-41 174.1 175 56.6
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 4.5e-40 169.5 184 53.8
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 5.9e-40 169.1 161 57.8
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.3e-39 167.9 115 76.5
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 5.0e-39 166.0 151 58.9
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 5.5e-38 162.5 177 52.5
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.2e-37 161.4 155 57.4
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.1e-37 160.6 117 72.6
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 3.6e-37 159.8 115 73.9
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 2.0e-35 154.1 308 48.1
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 4.4e-35 152.9 153 56.2
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 4.4e-35 152.9 105 74.3
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 5.7e-35 152.5 183 49.2
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 2.2e-31 140.6 156 51.9
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.9e-30 137.5 164 70.1
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 8.8e-28 128.6 308 39.6
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 5.7e-27 125.9 212 55.7
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.2e-26 124.0 207 57.5
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 6.3e-26 122.5 150 49.3
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 1.7e-23 114.4 78 70.5
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.2e-23 114.0 80 77.5
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.5e-23 112.1 80 76.2
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 8.5e-23 112.1 80 76.2
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.0e-20 103.2 73 76.7
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.8e-18 97.1 73 72.6
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 3.7e-18 96.7 117 52.1
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.1e-17 95.1 95 54.7
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 1.8e-17 94.4 67 76.1
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 4.1e-17 93.2 67 76.1
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 2.9e-15 87.0 154 44.8
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 9.5e-14 82.0 95 46.3
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.2e-13 81.6 116 44.0
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 1.2e-11 75.1 48 68.8
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 2.6e-11 73.9 329 26.1
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 3.4e-11 73.6 53 71.7
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 2.8e-10 70.5 47 74.5
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.1e-09 67.0 62 62.9
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 2.0e-08 64.3 42 66.7
C05p31220 Brassica napus HOM05D000252 ORTHO05D004664 2.3e-07 60.8 30 90.0
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.8e-07 60.1 144 34.7
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 9.5e-06 55.5 78 44.9


User provided reference genes

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