Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 0.0e+00 1268.1 704 100.0
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.6e-289 999.2 705 81.0
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 2.9e-275 951.8 722 75.8
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 5.5e-266 921.0 711 74.7
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 1.6e-260 902.9 713 73.6
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 7.7e-260 900.6 650 80.2
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 5.2e-256 887.9 710 73.8
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 3.1e-253 878.6 756 70.5
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 1.2e-252 876.7 698 73.6
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 3.5e-252 875.2 710 72.4
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 4.2e-250 868.2 706 72.4
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 1.2e-249 866.7 717 72.2
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 6.1e-249 864.4 716 72.3
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 3.0e-248 862.1 711 71.9
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 2.0e-247 859.4 711 72.2
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.7e-247 857.8 711 70.7
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 8.3e-246 854.0 710 70.4
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 1.2e-244 850.1 709 70.2
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.6e-244 849.7 712 71.3
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.9e-243 845.5 698 71.8
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 2.1e-241 839.3 706 70.3
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 6.1e-241 837.8 711 71.2
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.3e-240 835.9 719 69.0
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.3e-238 830.1 711 69.8
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.4e-237 825.9 711 68.9
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 1.5e-234 816.6 712 69.1
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 2.5e-234 815.8 712 67.8
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 2.5e-234 815.8 710 69.2
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 7.3e-234 814.3 712 68.0
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 5.8e-231 804.7 719 67.5
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.8e-231 803.9 710 67.7
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 7.8e-228 794.3 736 64.8
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 3.0e-227 792.3 608 75.5
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.7e-225 785.0 711 66.9
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.1e-224 782.3 728 66.8
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 5.2e-224 781.6 615 73.2
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 1.3e-222 776.9 712 65.6
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 3.2e-221 772.3 715 66.6
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 2.7e-220 769.2 725 65.4
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 3.0e-219 765.8 713 66.1
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 8.6e-219 764.2 725 65.1
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 1.9e-218 763.1 712 64.9
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 6.2e-217 758.1 772 63.3
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 2.3e-216 756.1 709 64.5
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 4.0e-216 755.4 713 64.4
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 8.9e-216 754.2 713 64.7
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 2.0e-215 753.1 708 65.0
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 2.6e-215 752.7 719 64.0
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 7.5e-215 751.1 706 65.7
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 7.8e-212 741.1 716 63.5
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 1.5e-210 736.9 703 63.6
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 3.3e-210 735.7 711 64.7
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 5.6e-210 734.9 711 65.0
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 9.5e-210 734.2 712 62.9
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 1.2e-207 727.2 708 63.3
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 2.9e-206 722.6 706 62.6
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 3.8e-206 722.2 727 62.9
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.9e-205 719.9 740 61.4
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.6e-204 716.8 730 62.1
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 1.0e-203 714.1 716 62.2
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 1.5e-202 710.3 717 62.5
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 6.9e-200 701.4 728 60.4
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 9.0e-200 701.0 711 61.6
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 2.0e-199 699.9 728 60.4
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 4.4e-199 698.7 743 61.6
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 9.9e-199 697.6 726 60.3
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.7e-198 696.8 721 61.3
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 2.2e-198 696.4 726 60.2
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 7.1e-197 691.4 631 67.4
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.6e-196 690.3 744 59.1
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.6e-196 690.3 728 61.8
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.6e-196 690.3 724 60.9
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.6e-196 688.7 728 61.7
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 2.3e-195 686.4 710 60.6
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 2.5e-194 682.9 721 60.6
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 7.3e-194 681.4 718 60.7
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 7.3e-194 681.4 728 61.0
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 9.6e-194 681.0 707 60.4
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 2.8e-193 679.5 737 59.7
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 1.4e-192 677.2 717 60.3
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.3e-192 675.2 738 60.2
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 5.3e-192 675.2 716 59.4
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 2.0e-191 673.3 739 58.2
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 3.8e-190 669.1 725 58.6
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 5.1e-187 658.7 727 57.9
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 4.2e-181 639.0 797 54.7
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 4.2e-181 639.0 484 73.1
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 6.7e-179 631.7 738 57.9
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 1.6e-177 627.1 735 56.3
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 2.8e-177 626.3 715 57.3
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 3.7e-177 625.9 784 54.2
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 1.4e-176 624.0 721 56.4
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 1.4e-176 624.0 728 56.7
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 9.0e-176 621.3 725 55.2
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 1.0e-174 617.8 709 54.9
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 1.4e-173 614.0 761 55.1
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 3.2e-173 612.8 708 55.4
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 3.5e-172 609.4 719 56.5
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 2.5e-165 586.6 380 84.2
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 7.2e-165 585.1 728 53.6
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.3e-163 580.1 723 54.4
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 5.1e-163 578.9 761 52.3
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.4e-160 570.1 695 53.5
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 9.1e-160 568.2 727 51.7
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 7.7e-159 565.1 728 53.0
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 9.7e-154 548.1 618 58.6
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 5.5e-141 505.8 668 53.1
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 6.8e-139 498.8 534 59.0
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 1.5e-138 497.7 448 67.2
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.9e-117 427.6 506 58.7
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.6e-116 424.5 506 58.5
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.2e-105 387.5 430 57.4
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 1.4e-104 384.8 754 41.2
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.7e-97 361.3 228 85.5
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 2.3e-94 350.9 236 83.5
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 3.6e-92 343.6 436 54.1
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 6.6e-86 322.8 212 82.1
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 6.6e-86 322.8 212 82.1
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 6.2e-84 316.2 230 76.1
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 2.4e-83 314.3 440 49.3
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.6e-82 310.8 231 76.2
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 3.5e-79 300.4 185 85.9
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 1.7e-78 298.1 380 52.9
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.1e-75 288.9 517 42.7
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 5.6e-69 266.5 172 84.3
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 1.1e-64 252.3 418 41.6
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 6.9e-59 233.0 135 89.6
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 9.3e-56 222.6 410 45.4
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.0e-54 219.2 309 49.8
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 8.8e-46 189.5 517 34.4
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 2.0e-37 161.8 208 54.3
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 9.1e-35 152.9 243 44.4
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 1.1e-32 146.0 93 79.6
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 2.1e-31 141.7 86 91.9
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 3.0e-30 137.9 202 50.0
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 6.3e-28 130.2 211 46.9
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.2e-24 117.9 70 92.9
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.2e-24 117.9 70 92.9
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.2e-24 117.9 70 92.9
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 4.2e-24 117.5 297 36.4
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.1e-23 115.2 72 87.5
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.4e-21 107.8 70 90.0
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 6.5e-17 93.6 451 28.6
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.2e-13 82.8 65 69.2
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 3.1e-11 74.7 70 60.0
C07p01440 Brassica napus HOM05D004485 ORTHO05D005485 5.4e-11 73.9 97 49.5
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.3e-09 69.3 305 28.5
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.5e-08 65.9 50 76.0
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 1.5e-08 65.9 355 24.5
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 7.2e-08 63.5 332 25.9
Eucgr.B00942 Eucalyptus grandis HOM05D004897 ORTHO05D005928 1.2e-07 62.8 329 25.5
Gorai.008G289400 Gossypium raimondii HOM05D004897 ORTHO05D005928 1.2e-07 62.8 358 25.4
Oeu014377.2 Olea europaea HOM05D004897 ORTHO05D005928 1.6e-07 62.4 359 25.9
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 2.1e-07 62.0 355 25.1
ClCG06G014390 Citrullus lanatus HOM05D004897 ORTHO05D005928 3.6e-07 61.2 333 25.8
arahy.Tifrunner.gnm1.ann1.G8QSGL Arachis hypogaea HOM05D004485 ORTHO05D005485 4.7e-07 60.8 66 57.6
Gohir.A12G268700 Gossypium hirsutum HOM05D004897 ORTHO05D005928 6.1e-07 60.5 356 24.7
PGR083G0946 Punica granatum HOM05D004897 ORTHO05D005928 6.1e-07 60.5 277 28.2
BraA07t27870Z Brassica rapa HOM05D004485 ORTHO05D005485 8.0e-07 60.1 64 60.9
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 8.0e-07 60.1 522 25.1
Lalb_Chr16g0387081 Lupinus albus HOM05D004897 ORTHO05D005928 1.8e-06 58.9 336 25.0
CAN.G1129.49 Capsicum annuum HOM05D004897 ORTHO05D005928 4.0e-06 57.8 337 25.8
FAN08G3076 Fragaria x ananassa HOM05D004897 ORTHO05D005928 4.0e-06 57.8 357 25.2
Prupe.5G232100 Prunus persica HOM05D004897 ORTHO05D005928 4.0e-06 57.8 332 25.9
HanXRQChr03g0072061 Helianthus annuus HOM05D004485 ORTHO05D005485 6.8e-06 57.0 40 70.0
PGSC0003DMG400005743 Solanum tuberosum HOM05D004897 ORTHO05D005928 6.8e-06 57.0 336 25.0
CDE05G2998 Ceratophyllum demersum HOM05D004897 ORTHO05D005928 8.9e-06 56.6 362 25.1
Cc04_g06380 Coffea canephora HOM05D004897 ORTHO05D005928 8.9e-06 56.6 335 23.6


User provided reference genes

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