Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.9e-308 1061.6 520 100.0
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.7e-272 942.2 519 88.4
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 2.7e-270 934.9 519 86.9
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 6.7e-269 930.2 519 85.5
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 8.8e-269 929.9 519 84.8
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 1.3e-264 916.0 519 84.2
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 5.0e-264 914.1 519 84.0
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 9.4e-263 909.8 519 83.8
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.6e-262 909.1 519 83.8
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 2.1e-262 908.7 517 84.3
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 7.9e-262 906.7 519 83.0
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 3.0e-261 904.8 519 84.0
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 2.8e-259 898.3 519 82.9
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 8.2e-259 896.7 525 82.1
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 8.2e-259 896.7 517 83.2
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.1e-258 896.3 525 81.9
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 1.8e-258 895.6 519 82.5
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 5.3e-258 894.0 517 82.8
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 9.1e-258 893.3 525 81.7
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 4.5e-257 891.0 520 82.3
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 7.7e-257 890.2 525 81.3
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 5.0e-256 887.5 516 82.8
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 8.5e-256 886.7 520 82.3
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.1e-255 886.3 520 82.7
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 2.5e-255 885.2 520 82.5
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 9.4e-255 883.2 520 81.5
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 9.4e-255 883.2 520 81.2
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 1.2e-254 882.9 519 81.9
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.7e-254 881.7 542 79.2
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 6.1e-254 880.6 546 78.9
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 8.0e-254 880.2 520 80.8
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 3.9e-253 877.9 520 81.3
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 5.2e-253 877.5 514 81.5
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 6.7e-253 877.1 520 80.4
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 6.7e-253 877.1 519 80.5
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 8.8e-253 876.7 518 81.1
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 8.8e-253 876.7 518 80.9
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 2.0e-252 875.5 520 80.4
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 2.6e-252 875.2 519 80.7
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 4.4e-252 874.4 519 81.1
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 7.4e-252 873.6 519 79.2
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 7.4e-252 873.6 520 79.2
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 7.4e-252 873.6 519 80.3
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 2.2e-251 872.1 519 79.0
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 4.8e-251 870.9 515 80.6
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 6.3e-251 870.5 520 80.0
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.8e-250 869.0 520 79.4
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.8e-250 869.0 519 81.1
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 2.4e-250 868.6 520 80.8
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.4e-250 868.6 519 80.0
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.4e-250 868.6 519 80.0
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 3.1e-250 868.2 523 78.4
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 3.1e-250 868.2 520 79.6
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 7.0e-250 867.1 519 80.2
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 2.0e-249 865.5 519 79.2
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 2.0e-249 865.5 520 78.7
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 2.0e-249 865.5 520 78.8
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 2.0e-249 865.5 520 78.8
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 2.0e-249 865.5 520 78.7
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 2.6e-249 865.1 520 79.2
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 5.9e-249 864.0 520 78.7
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 5.9e-249 864.0 519 79.0
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 1.3e-248 862.8 520 78.7
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 1.3e-248 862.8 519 79.4
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 1.7e-248 862.4 523 78.2
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 2.2e-248 862.1 518 79.7
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 2.9e-248 861.7 519 80.0
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 3.2e-247 858.2 517 78.9
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 4.2e-247 857.8 529 78.3
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 4.2e-247 857.8 519 79.6
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.5e-247 857.4 553 76.1
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 5.5e-247 857.4 517 78.9
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.2e-246 856.3 520 78.8
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 1.2e-246 856.3 517 78.7
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 1.2e-246 856.3 517 78.7
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 2.1e-246 855.5 517 78.9
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 2.7e-246 855.1 517 78.7
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 2.7e-246 855.1 517 78.7
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 3.6e-246 854.7 519 79.2
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 6.1e-246 854.0 518 78.8
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 8.0e-246 853.6 523 78.4
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 3.0e-245 851.7 523 78.0
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 5.2e-245 850.9 519 77.8
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 8.8e-245 850.1 518 79.3
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 9.7e-244 846.7 519 77.6
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.2e-243 845.5 519 76.9
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 1.4e-242 842.8 521 77.7
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.8e-242 842.4 517 79.3
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 4.1e-242 841.3 527 76.1
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 3.5e-241 838.2 519 79.8
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 7.7e-241 837.0 519 78.0
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.3e-240 836.3 515 77.7
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 6.5e-240 833.9 517 78.9
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 6.5e-240 833.9 494 81.6
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 2.7e-238 828.6 466 84.5
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 8.0e-238 827.0 512 77.3
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.0e-237 826.6 519 77.8
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 2.3e-237 825.5 466 84.8
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 3.0e-237 825.1 516 75.8
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 8.8e-237 823.5 465 84.9
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 3.4e-236 821.6 467 82.0
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 3.4e-236 821.6 529 75.2
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 9.8e-236 820.1 519 76.1
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 4.8e-235 817.8 524 75.6
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 6.3e-235 817.4 476 79.8
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.4e-234 815.5 519 76.7
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 7.0e-234 813.9 516 76.0
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 3.5e-233 811.6 525 75.4
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 5.9e-233 810.8 524 75.0
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 2.9e-232 808.5 494 78.5
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 3.8e-232 808.1 520 74.0
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 8.6e-232 807.0 520 73.8
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 4.7e-230 801.2 521 75.4
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 2.3e-229 798.9 469 81.9
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 2.0e-228 795.8 519 74.6
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 7.5e-228 793.9 470 80.0
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 2.8e-227 792.0 513 74.1
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 4.9e-227 791.2 513 74.1
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 1.8e-226 789.3 520 73.1
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 5.4e-226 787.7 522 72.6
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 7.0e-226 787.3 514 74.3
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 9.2e-226 786.9 517 73.5
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 2.0e-225 785.8 520 73.1
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 3.5e-225 785.0 491 78.2
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 5.6e-223 777.7 574 67.9
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 8.9e-221 770.4 554 69.9
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 9.8e-220 766.9 519 71.3
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 1.7e-219 766.1 519 71.3
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 3.7e-219 765.0 549 69.6
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 6.4e-219 764.2 519 71.1
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 3.2e-218 761.9 559 69.2
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 5.4e-218 761.1 496 73.4
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 2.0e-217 759.2 496 73.2
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 3.1e-213 745.3 519 71.1
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 5.2e-213 744.6 519 70.1
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 6.8e-213 744.2 519 69.9
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.9e-207 726.1 519 69.0
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 1.7e-203 713.0 541 65.6
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 8.6e-200 700.7 519 66.9
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 1.8e-197 693.0 521 67.6
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 2.2e-195 686.0 377 85.1
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 2.7e-193 679.1 502 69.5
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 1.1e-191 673.7 380 83.7
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 2.1e-185 652.9 476 67.2
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 7.9e-185 651.0 384 81.8
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 1.6e-182 643.3 561 61.0
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 1.2e-177 627.1 481 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 7.4e-175 617.8 471 60.9
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 1.7e-171 606.7 446 63.0
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 2.8e-166 589.3 472 60.0
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 2.2e-158 563.1 512 55.7
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 5.9e-148 528.5 352 73.3
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 5.3e-133 478.8 292 79.5
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 1.7e-131 473.8 288 80.6
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.2e-131 473.4 265 82.3
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 8.0e-129 464.9 286 76.2
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 7.5e-127 458.4 291 74.9
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 2.5e-122 443.4 287 76.3
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 3.2e-109 399.8 250 74.4
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 5.4e-101 372.5 246 74.8
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 7.6e-79 298.9 204 70.1
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 1.4e-56 224.9 468 32.3
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 5.8e-55 219.5 132 75.8
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 4.2e-53 213.4 472 31.4
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.4e-40 171.8 199 47.7
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 2.0e-34 151.4 109 66.1
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 7.4e-34 149.4 133 54.1
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 7.7e-23 112.8 85 67.1
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.9e-21 108.2 142 50.7
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 1.6e-20 105.1 60 78.3
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 2.3e-19 101.3 60 73.3
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 4.8e-17 93.6 159 35.8
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.7e-14 85.1 167 38.3
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 6.3e-09 66.6 55 60.0


User provided reference genes

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