Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 5.3e-262 907.1 457 100.0
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 1.0e-260 902.9 457 98.2
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 5.4e-230 800.8 461 88.1
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 2.6e-224 781.9 460 85.9
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.4e-222 776.2 461 85.7
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 2.7e-221 771.9 461 86.6
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 7.8e-221 770.4 464 86.4
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 5.1e-220 767.7 461 85.7
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 1.9e-219 765.8 461 84.6
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 4.3e-219 764.6 461 82.6
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 4.3e-219 764.6 461 83.5
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 9.5e-219 763.5 460 84.3
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.6e-218 762.7 463 85.3
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 2.1e-218 762.3 463 85.3
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 1.1e-217 760.0 459 83.7
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.1e-217 758.4 459 83.4
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 8.9e-217 756.9 461 82.9
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 1.2e-216 756.5 461 82.4
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 2.0e-216 755.7 461 83.9
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 2.6e-216 755.4 461 83.7
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 2.6e-216 755.4 479 80.4
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 4.4e-216 754.6 463 83.4
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 9.9e-216 753.4 461 81.8
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.3e-215 753.1 461 84.2
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 1.7e-215 752.7 527 77.6
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 1.7e-215 752.7 457 82.9
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 1.7e-215 752.7 461 82.6
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 2.2e-215 752.3 461 84.6
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 2.9e-215 751.9 462 81.8
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 3.8e-215 751.5 462 81.6
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 3.8e-215 751.5 461 82.0
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 3.8e-215 751.5 477 80.5
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 3.8e-215 751.5 461 81.3
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 4.9e-215 751.1 461 82.9
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 6.4e-215 750.7 461 82.6
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 6.4e-215 750.7 461 81.8
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.1e-214 750.0 479 80.6
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 1.9e-214 749.2 460 82.6
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 7.1e-214 747.3 461 82.4
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 7.1e-214 747.3 461 81.3
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 9.2e-214 746.9 458 82.3
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 1.2e-213 746.5 457 82.5
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 1.6e-213 746.1 455 82.2
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 2.1e-213 745.7 457 82.3
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 3.5e-213 745.0 458 82.1
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.7e-212 742.7 461 81.1
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 1.7e-212 742.7 477 80.9
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 3.0e-212 741.9 457 82.1
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 2.5e-211 738.8 461 80.7
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 2.5e-211 738.8 461 79.8
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 7.3e-211 737.3 460 81.5
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 1.2e-210 736.5 462 81.4
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 3.4e-208 728.4 462 81.0
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 5.8e-208 727.6 461 80.0
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 9.9e-208 726.9 455 80.9
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 8.4e-207 723.8 459 78.6
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 1.1e-206 723.4 455 79.8
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 1.4e-206 723.0 457 80.1
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 1.9e-206 722.6 456 79.6
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 5.4e-206 721.1 458 79.5
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 3.5e-205 718.4 456 80.0
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 4.6e-205 718.0 454 78.6
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 6.6e-204 714.1 462 79.4
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 1.5e-203 713.0 456 79.2
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 4.3e-203 711.4 432 83.1
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 2.1e-202 709.1 465 76.8
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 2.1e-202 709.1 445 79.8
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 4.8e-202 708.0 461 79.4
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 4.8e-202 708.0 445 79.6
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 1.8e-201 706.1 461 76.6
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 1.5e-200 703.0 461 76.1
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 2.0e-200 702.6 456 78.7
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 2.0e-200 702.6 404 85.1
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 3.4e-200 701.8 457 78.8
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 5.8e-200 701.0 456 78.3
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 1.3e-199 699.9 457 78.6
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 1.6e-197 693.0 455 76.3
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 5.1e-196 688.0 470 78.5
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 1.6e-194 682.9 468 76.3
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 3.6e-194 681.8 361 91.7
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 4.8e-194 681.4 388 85.3
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 3.1e-193 678.7 463 76.7
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 9.0e-193 677.2 460 76.3
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.9e-191 672.2 459 76.3
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 9.3e-190 667.2 356 91.6
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 4.6e-189 664.8 461 78.7
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 6.2e-186 654.4 465 73.8
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 3.8e-183 645.2 456 73.7
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 3.8e-183 645.2 357 86.8
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 4.8e-178 628.2 379 78.6
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 1.4e-177 626.7 331 92.4
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 8.7e-172 607.4 331 89.1
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 3.2e-166 589.0 385 73.8
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 1.3e-162 577.0 382 72.0
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 2.8e-162 575.9 364 79.9
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 1.1e-161 573.9 382 72.3
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 3.4e-160 568.9 363 80.2
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.1e-158 563.9 384 76.8
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 9.4e-158 560.8 461 66.6
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 3.1e-153 545.8 382 68.1
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 1.9e-150 536.6 283 90.5
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 1.2e-144 517.3 278 90.6
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 5.5e-142 508.4 316 79.1
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 2.8e-138 496.1 405 61.7
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 5.4e-137 491.9 320 80.3
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 5.7e-131 471.9 432 60.9
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 3.7e-130 469.2 321 73.5
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.0e-128 463.4 416 62.0
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 5.0e-127 458.8 236 91.9
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 5.0e-127 458.8 236 91.9
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.1e-126 457.6 331 71.9
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 1.0e-111 407.9 412 49.5
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 8.7e-95 351.7 242 76.9
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 3.7e-77 293.1 318 48.1
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 6.0e-64 249.2 337 42.1
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.2e-59 235.0 402 38.1
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.3e-53 214.9 380 36.3
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 1.0e-50 205.3 349 35.8
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 2.9e-50 203.8 369 35.0
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.4e-49 201.4 117 84.6
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 1.3e-45 188.3 156 64.1
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 4.8e-45 186.4 102 87.3
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 2.4e-44 184.1 363 32.2
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 1.0e-42 178.7 99 88.9
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 3.8e-42 176.8 155 65.8
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 2.0e-38 164.5 96 86.5
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 4.8e-21 106.7 51 90.2
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 3.4e-14 84.0 45 95.6
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 3.7e-13 80.5 101 56.4
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 2.1e-08 64.7 38 84.2
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 4.7e-08 63.5 42 76.2
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 1.0e-07 62.4 150 28.0


User provided reference genes

Program Settings