Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p038810 Quercus lobata HOM05D006715 ORTHO05D008345 3.3e-144 515.0 254 100.0
QL09p013340 Quercus lobata HOM05D006715 ORTHO05D008345 1.4e-33 147.5 367 33.2
Cfa018312 Carpinus fangiana HOM05D006715 ORTHO05D008345 2.8e-18 96.7 169 39.6
Haze_17767 Corylus avellana HOM05D006715 ORTHO05D008345 8.1e-18 95.1 169 39.1
CiPaw.16G011000 Carya illinoinensis HOM05D006715 ORTHO05D008345 2.2e-15 87.0 169 38.5
Actinidia17784 Actinidia chinensis HOM05D006715 ORTHO05D008345 3.2e-14 83.2 169 38.5
CSS0020422 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 3.5e-13 79.7 125 44.8
CANSAT25G3857 Cannabis sativa HOM05D006715 ORTHO05D008345 1.0e-12 78.2 168 36.9
Prupe.8G033600 Prunus persica HOM05D006715 ORTHO05D008345 3.9e-12 76.3 189 36.5
GSVIVG01034549001 Vitis vinifera HOM05D006715 ORTHO05D008345 5.1e-12 75.9 130 44.6
Atru.chr13.2084 Acer truncatum HOM05D006715 ORTHO05D008345 6.7e-12 75.5 168 33.9
FvH4_2g13430 Fragaria vesca HOM05D006715 ORTHO05D008345 8.7e-12 75.1 169 32.5
FAN24G1213 Fragaria x ananassa HOM05D006715 ORTHO05D008345 8.7e-12 75.1 169 32.5
MD05G1027900 Malus domestica HOM05D006715 ORTHO05D008345 8.7e-12 75.1 189 37.0
Dinv41067 Davidia involucrata HOM05D006715 ORTHO05D008345 1.5e-11 74.3 163 36.2
Thecc.08G154500 Theobroma cacao HOM05D006715 ORTHO05D008345 1.9e-11 73.9 164 34.1
COL.COLO4_29857 Corchorus olitorius HOM05D006715 ORTHO05D008345 2.5e-11 73.6 164 36.6
CSS0028068 Camellia sinensis var. sinensis HOM05D006715 ORTHO05D008345 5.6e-11 72.4 100 46.0
Duzib093G1010 Durio zibethinus HOM05D006715 ORTHO05D008345 5.6e-11 72.4 102 42.2
Potri.005G193500 Populus trichocarpa HOM05D006715 ORTHO05D008345 7.4e-11 72.0 165 35.2
Nitab4.5_0001187g0100 Nicotiana tabacum HOM05D006715 ORTHO05D008345 1.3e-10 71.2 182 37.4
MELO3C025024.2 Cucumis melo HOM05D006715 ORTHO05D008345 1.6e-10 70.9 168 33.9
Lj2g0009741 Lotus japonicus HOM05D006715 ORTHO05D008345 1.6e-10 70.9 169 34.9
Lj2g0026984 Lotus japonicus HOM05D006715 ORTHO05D008345 1.6e-10 70.9 169 34.9
TPR.G23114 Trifolium pratense HOM05D006715 ORTHO05D008345 1.6e-10 70.9 169 33.1
ClCG08G002210 Citrullus lanatus HOM05D006715 ORTHO05D008345 2.1e-10 70.5 172 34.9
Glyma.16G166500 Glycine max HOM05D006715 ORTHO05D008345 2.1e-10 70.5 167 35.3
Ciclev10000601m.g Citrus clementina HOM05D006715 ORTHO05D008345 2.8e-10 70.1 164 33.5
MSTRG.24217 Avicennia marina HOM05D006715 ORTHO05D008345 3.6e-10 69.7 165 34.5
Migut.N03207 Erythranthe guttata HOM05D006715 ORTHO05D008345 3.6e-10 69.7 154 35.1
FAN27G2814 Fragaria x ananassa HOM05D006715 ORTHO05D008345 4.8e-10 69.3 100 41.0
VMungo0464G1764 Vigna mungo HOM05D006715 ORTHO05D008345 4.8e-10 69.3 166 34.9
Lalb_Chr01g0009561 Lupinus albus HOM05D006715 ORTHO05D008345 6.2e-10 68.9 100 44.0
RcHm_v2.0_Chr6g0275051 Rosa chinensis HOM05D006715 ORTHO05D008345 1.1e-09 68.2 172 33.7
Phvul.004G094200 Phaseolus vulgaris HOM05D006715 ORTHO05D008345 1.4e-09 67.8 166 34.9
Sopen04g027550 Solanum pennellii HOM05D006715 ORTHO05D008345 1.4e-09 67.8 169 33.7
TWI34G0194 Tripterygium wilfordii HOM05D006715 ORTHO05D008345 1.4e-09 67.8 98 40.8
CsaV3_6G002600 Cucumis sativus L. HOM05D006715 ORTHO05D008345 3.1e-09 66.6 171 32.7
Peaxi162Scf00599g00121 Petunia axillaris HOM05D006715 ORTHO05D008345 3.1e-09 66.6 169 33.1
RcHm_v2.0_Chr5g0050861 Rosa chinensis HOM05D006715 ORTHO05D008345 3.1e-09 66.6 172 32.6
Rhsim05G0181200 Rhododendron simsii HOM05D006715 ORTHO05D008345 4.0e-09 66.2 188 33.5
arahy.Tifrunner.gnm1.ann1.SG7PGU Arachis hypogaea HOM05D006715 ORTHO05D008345 5.3e-09 65.9 182 31.9
Psat1g102000 Pisum sativum HOM05D006715 ORTHO05D008345 5.3e-09 65.9 169 33.7
Potri.005G193701 Populus trichocarpa HOM05D006715 ORTHO05D008345 5.3e-09 65.9 97 42.3
PSO675G4790 Papaver somniferum HOM05D006715 ORTHO05D008345 6.9e-09 65.5 183 29.0
CAN.G1215.10 Capsicum annuum HOM05D006715 ORTHO05D008345 9.0e-09 65.1 192 32.3
Ca_26954_v3 Cicer arietinum L. HOM05D006715 ORTHO05D008345 9.0e-09 65.1 263 30.8
arahy.Tifrunner.gnm1.ann1.6MC3QX Arachis hypogaea HOM05D006715 ORTHO05D008345 2.0e-08 63.9 182 31.9
Gohir.A06G112504 Gossypium hirsutum HOM05D006715 ORTHO05D008345 2.0e-08 63.9 170 30.0
Manes.02G180601 Manihot esculenta HOM05D006715 ORTHO05D008345 2.0e-08 63.9 172 33.1
PGSC0003DMG400024094 Solanum tuberosum HOM05D006715 ORTHO05D008345 3.4e-08 63.2 189 32.8
Hund26691 Selenicereus undatus HOM05D006715 ORTHO05D008345 4.5e-08 62.8 98 40.8
Cpa.g.sc1027.1 Carica papaya HOM05D006715 ORTHO05D008345 5.8e-08 62.4 95 38.9
Medtr2g045070 Medicago truncatula HOM05D006715 ORTHO05D008345 5.8e-08 62.4 122 39.3
Gorai.010G134600 Gossypium raimondii HOM05D006715 ORTHO05D008345 1.3e-07 61.2 102 37.3
Nitab4.5_0002764g0020 Nicotiana tabacum HOM05D006715 ORTHO05D008345 1.3e-07 61.2 169 32.5
SGA_v2.0_scaffold25G11186 Striga asiatica HOM05D006715 ORTHO05D008345 1.7e-07 60.8 155 29.7
Lsat_1_v5_gn_9_41180 Lactuca sativa HOM05D006715 ORTHO05D008345 1.1e-06 58.2 140 32.1
vmacro20039 Vaccinium macrocarpon HOM05D006715 ORTHO05D008345 1.1e-06 58.2 168 32.1
AUR62026687 Chenopodium quinoa HOM05D006715 ORTHO05D008345 3.2e-06 56.6 97 40.2
Nn5g28769 Nelumbo nucifera HOM05D006715 ORTHO05D008345 3.2e-06 56.6 172 31.4
TAR381G1273 Trochodendron aralioides HOM05D006715 ORTHO05D008345 5.5e-06 55.8 96 39.6


User provided reference genes

Program Settings