Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p037589 Quercus lobata HOM05D004894 ORTHO05D005689 4.5e-95 351.3 184 100.0
QL02p038558 Quercus lobata HOM05D004894 ORTHO05D005689 3.0e-86 322.0 184 94.0
QL02p038562 Quercus lobata HOM05D004894 ORTHO05D005689 2.1e-60 236.1 179 69.8
QL02p037592 Quercus lobata HOM05D004894 ORTHO05D005689 4.8e-60 235.0 179 69.3
CiPaw.16G009500 Carya illinoinensis HOM05D004894 ORTHO05D005689 4.5e-42 175.3 182 55.5
Haze_17777 Corylus avellana HOM05D004894 ORTHO05D005689 7.6e-42 174.5 183 53.6
Haze_17792 Corylus avellana HOM05D004894 ORTHO05D005689 9.3e-40 167.5 175 53.7
Cfa018298 Carpinus fangiana HOM05D004894 ORTHO05D005689 1.6e-39 166.8 175 54.9
MD10G1032700 Malus domestica HOM05D004894 ORTHO05D005689 3.5e-39 165.6 170 54.7
CiPaw.15G014000 Carya illinoinensis HOM05D004894 ORTHO05D005689 2.2e-33 146.4 162 52.5
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 6.5e-33 144.8 151 50.3
Ciclev10003770m.g Citrus clementina HOM05D004894 ORTHO05D005689 2.7e-31 139.4 169 47.9
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 2.7e-31 139.4 165 48.5
RcHm_v2.0_Chr6g0274541 Rosa chinensis HOM05D004894 ORTHO05D009560 7.9e-31 137.9 173 49.7
Ciclev10003123m.g Citrus clementina HOM05D004894 ORTHO05D005689 4.8e-28 128.6 151 47.0
FAN24G3270 Fragaria x ananassa HOM05D004894 ORTHO05D005689 5.0e-25 118.6 153 45.1
FvH4_2g13220 Fragaria vesca HOM05D004894 ORTHO05D005689 8.5e-25 117.9 153 44.4
MD10G1032400 Malus domestica HOM05D004894 ORTHO05D005689 1.4e-24 117.1 124 52.4
Sabra13G0011900 Salix brachista HOM05D004894 ORTHO05D009560 5.5e-24 115.2 181 41.4
TWI34G1211 Tripterygium wilfordii HOM05D004894 ORTHO05D005689 9.4e-24 114.4 150 45.3
SHI09078 Sapria himalayana HOM05D004894 ORTHO05D005689 1.6e-23 113.6 167 41.3
Haze_17791 Corylus avellana HOM05D004894 ORTHO05D009560 3.6e-23 112.5 163 41.1
Medtr4g062290 Medicago truncatula HOM05D004894 ORTHO05D005689 7.9e-23 111.3 156 42.9
Cfa018299 Carpinus fangiana HOM05D004894 ORTHO05D005689 1.0e-22 110.9 169 40.2
Psat1g100960 Pisum sativum HOM05D004894 ORTHO05D005689 2.0e-21 106.7 151 42.4
FAN24G0571 Fragaria x ananassa HOM05D004894 ORTHO05D005689 2.5e-21 106.3 132 47.7
FAN27G2788 Fragaria x ananassa HOM05D004894 ORTHO05D009560 1.3e-20 104.0 132 46.2
FAN20G3174 Fragaria x ananassa HOM05D004894 ORTHO05D005689 4.8e-20 102.1 169 42.0
Lalb_Chr03g0035461 Lupinus albus HOM05D004894 ORTHO05D005689 4.8e-20 102.1 165 38.2
Medtr6g038010 Medicago truncatula HOM05D004894 ORTHO05D005689 6.3e-20 101.7 151 39.7
Psat6g191360 Pisum sativum HOM05D004894 ORTHO05D005689 6.3e-20 101.7 167 37.1
TPR.G12635 Trifolium pratense HOM05D004894 ORTHO05D005689 1.1e-19 100.9 153 39.2
arahy.Tifrunner.gnm1.ann1.P5DTJP Arachis hypogaea HOM05D004894 ORTHO05D005689 2.4e-19 99.8 157 36.9
Lalb_Chr03g0035451 Lupinus albus HOM05D004894 ORTHO05D005689 2.4e-19 99.8 150 38.0
Ciclev10002638m.g Citrus clementina HOM05D004894 ORTHO05D005689 4.1e-19 99.0 171 35.7
Psat6g191520 Pisum sativum HOM05D004894 ORTHO05D005689 1.2e-18 97.4 167 34.1
Psat6g191960 Pisum sativum HOM05D004894 ORTHO05D005689 1.2e-18 97.4 167 34.1
TPR.G9011 Trifolium pratense HOM05D004894 ORTHO05D005689 1.2e-18 97.4 172 35.5
Glyma.16G164600 Glycine max HOM05D004894 ORTHO05D005689 2.6e-18 96.3 167 36.5
Glyma.20G168700 Glycine max HOM05D004894 ORTHO05D005689 3.4e-18 95.9 171 37.4
Atru.chr13.2013 Acer truncatum HOM05D004894 ORTHO05D005689 4.5e-18 95.5 148 39.2
arahy.Tifrunner.gnm1.ann1.VH20NJ Arachis hypogaea HOM05D004894 ORTHO05D005689 1.0e-17 94.4 146 37.7
Lj2g0017521 Lotus japonicus HOM05D004894 ORTHO05D005689 1.3e-17 94.0 152 35.5
VMungo0647G0768 Vigna mungo HOM05D004894 ORTHO05D005689 1.3e-17 94.0 165 35.2
Phvul.007G082200 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 1.7e-17 93.6 160 36.9
Cfa018297 Carpinus fangiana HOM05D004894 ORTHO05D005689 2.2e-17 93.2 153 35.3
Glyma.10G223100 Glycine max HOM05D004894 ORTHO05D005689 3.8e-17 92.4 165 37.0
Lj5g0011961 Lotus japonicus HOM05D004894 ORTHO05D005689 3.8e-17 92.4 163 34.4
Psat7g222760 Pisum sativum HOM05D004894 ORTHO05D005689 3.8e-17 92.4 166 36.1
Lalb_Chr03g0035551 Lupinus albus HOM05D004894 ORTHO05D005689 5.0e-17 92.0 148 40.5
arahy.Tifrunner.gnm1.ann1.56TCJ2 Arachis hypogaea HOM05D004894 ORTHO05D005689 8.5e-17 91.3 148 34.5
Psat6g191440 Pisum sativum HOM05D004894 ORTHO05D005689 1.4e-16 90.5 131 35.9
Glyma.10G223000 Glycine max HOM05D004894 ORTHO05D005689 1.9e-16 90.1 172 34.9
VMungo0464G0707 Vigna mungo HOM05D004894 ORTHO05D005689 2.5e-16 89.7 160 36.2
Lalb_Chr02g0141491 Lupinus albus HOM05D004894 ORTHO05D005689 3.2e-16 89.4 165 34.5
VMungo0720G1196 Vigna mungo HOM05D004894 ORTHO05D005689 3.2e-16 89.4 139 38.8
Lalb_Chr03g0035581 Lupinus albus HOM05D004894 ORTHO05D005689 5.5e-16 88.6 156 39.1
Lalb_Chr19g0130051 Lupinus albus HOM05D004894 ORTHO05D005689 5.5e-16 88.6 173 33.5
Lalb_Chr19g0130071 Lupinus albus HOM05D004894 ORTHO05D005689 5.5e-16 88.6 173 33.5
Potri.013G013300 Populus trichocarpa HOM05D004894 ORTHO05D005689 5.5e-16 88.6 170 38.8
TPR.G12614 Trifolium pratense HOM05D004894 ORTHO05D005689 5.5e-16 88.6 147 38.1
Lalb_Chr19g0130151 Lupinus albus HOM05D004894 ORTHO05D005689 7.2e-16 88.2 170 34.1
Lalb_Chr19g0130161 Lupinus albus HOM05D004894 ORTHO05D005689 7.2e-16 88.2 170 34.1
Lalb_Chr14g0362611 Lupinus albus HOM05D004894 ORTHO05D005689 2.1e-15 86.7 167 32.3
Cfa018296 Carpinus fangiana HOM05D004894 ORTHO05D005689 2.7e-15 86.3 142 43.7
Phvul.004G091800 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 2.7e-15 86.3 163 34.4
Thecc.08G156900 Theobroma cacao HOM05D007679 ORTHO05D009560 4.7e-15 85.5 176 33.5
VMungo0720G2185 Vigna mungo HOM05D004894 ORTHO05D005689 4.7e-15 85.5 159 33.3
Ca_10673_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 7.9e-15 84.7 156 32.7
TPR.G12588 Trifolium pratense HOM05D000036 ORTHO05D005689 1.0e-14 84.3 140 36.4
Glyma.02G080000 Glycine max HOM05D004894 ORTHO05D005689 1.4e-14 84.0 172 33.1
Manes.02G182301 Manihot esculenta HOM05D004894 ORTHO05D005689 1.8e-14 83.6 172 32.6
Phvul.008G271200 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 5.1e-14 82.0 166 32.5
Duzib041G0061 Durio zibethinus HOM05D007679 ORTHO05D009560 8.8e-14 81.3 156 34.0
Ciclev10003694m.g Citrus clementina HOM05D004894 ORTHO05D005689 1.1e-13 80.9 156 34.0
Phvul.007G082100 Phaseolus vulgaris HOM05D004894 ORTHO05D005689 1.5e-13 80.5 161 32.9
Psat4g130720 Pisum sativum HOM05D004894 ORTHO05D005689 1.5e-13 80.5 154 37.0
Glyma.10G140100 Glycine max HOM05D004894 ORTHO05D005689 3.3e-13 79.3 168 31.0
Cpa.g.sc49.92 Carica papaya HOM05D007679 ORTHO05D009560 7.4e-13 78.2 178 31.5
Duzib041G0498 Durio zibethinus HOM05D007679 ORTHO05D009560 9.7e-13 77.8 185 34.6
Thecc.08G157300 Theobroma cacao HOM05D007679 ORTHO05D009560 2.2e-12 76.6 173 32.4
TPR.G36349 Trifolium pratense HOM05D004894 ORTHO05D005689 3.7e-12 75.9 144 35.4
Lalb_Chr19g0130061 Lupinus albus HOM05D004894 ORTHO05D005689 4.8e-12 75.5 165 36.4
PGR042G1870 Punica granatum HOM05D027166 ORTHO05D022406 1.1e-11 74.3 159 34.6
Peaxi162Scf00079g00202 Petunia axillaris HOM05D011489 ORTHO05D014472 1.8e-11 73.6 170 32.4
Medtr1g098410 Medicago truncatula HOM05D004894 ORTHO05D005689 3.1e-11 72.8 165 30.9
TPR.G36348 Trifolium pratense HOM05D004894 ORTHO05D005689 3.1e-11 72.8 178 33.1
COL.COLO4_34260 Corchorus olitorius HOM05D007679 ORTHO05D009560 5.3e-11 72.0 194 28.9
Gohir.D05G247000 Gossypium hirsutum HOM05D007679 ORTHO05D009560 5.3e-11 72.0 184 33.2
Manes.02G182200 Manihot esculenta HOM05D004894 ORTHO05D009560 5.3e-11 72.0 171 31.0
Migut.C00970 Erythranthe guttata HOM05D011489 ORTHO05D005689 1.2e-10 70.9 158 31.0
SGA_v2.0_scaffold108G30878 Striga asiatica HOM05D011489 ORTHO05D014472 1.2e-10 70.9 177 29.9
Gohir.A05G245500 Gossypium hirsutum HOM05D007679 ORTHO05D009560 2.0e-10 70.1 184 32.6
Ciclev10003802m.g Citrus clementina HOM05D004894 ORTHO05D005689 5.9e-10 68.6 170 30.6
Psat6g191560 Pisum sativum HOM05D004894 ORTHO05D005689 5.9e-10 68.6 103 34.0
Cpa.g.sc49.90 Carica papaya HOM05D007679 ORTHO05D009560 1.0e-09 67.8 153 32.0
Gorai.009G257700 Gossypium raimondii HOM05D007679 ORTHO05D009560 1.0e-09 67.8 148 33.8
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 1.0e-09 67.8 152 32.9
Psat7g222800 Pisum sativum HOM05D004894 ORTHO05D005689 1.0e-09 67.8 104 37.5
Oeu046059.1 Olea europaea HOM05D011489 ORTHO05D014472 1.3e-09 67.4 178 30.9
Cpa.g.sc49.91 Carica papaya HOM05D007679 ORTHO05D009560 1.7e-09 67.0 172 31.4
Medtr1g098200 Medicago truncatula HOM05D004894 ORTHO05D005689 2.2e-09 66.6 170 28.8
Medtr1g098400 Medicago truncatula HOM05D004894 ORTHO05D005689 2.2e-09 66.6 170 28.8
PGR042G2832 Punica granatum HOM05D027166 ORTHO05D005689 2.2e-09 66.6 159 27.0
Lj6g0020324 Lotus japonicus HOM05D008403 ORTHO05D010317 2.9e-09 66.2 142 35.2
Duzib093G1264 Durio zibethinus HOM05D007679 ORTHO05D009560 6.5e-09 65.1 175 30.9
Gorai.009G264900 Gossypium raimondii HOM05D007679 ORTHO05D009560 6.5e-09 65.1 179 30.7
Medtr1g098430 Medicago truncatula HOM05D004894 ORTHO05D005689 6.5e-09 65.1 170 27.1
Gohir.A05G251500 Gossypium hirsutum HOM05D007679 ORTHO05D009560 1.5e-08 63.9 149 29.5
Potri.013G012733 Populus trichocarpa HOM05D010921 ORTHO05D013092 1.5e-08 63.9 157 33.1
Oeu061438.1 Olea europaea HOM05D011489 ORTHO05D014472 1.9e-08 63.5 179 30.7
Potri.013G012800 Populus trichocarpa HOM05D010921 ORTHO05D013092 2.5e-08 63.2 149 30.9
Gohir.D05G252300 Gossypium hirsutum HOM05D007679 ORTHO05D009560 4.2e-08 62.4 179 30.2
Potri.003G122000 Populus trichocarpa HOM05D023468 ORTHO05D022406 5.5e-08 62.0 172 29.1
TPR.G14508 Trifolium pratense HOM05D004894 ORTHO05D005689 5.5e-08 62.0 164 27.4
MSTRG.1100 Avicennia marina HOM05D011489 ORTHO05D014472 7.2e-08 61.6 159 31.4
Potri.005G195200 Populus trichocarpa HOM05D010921 ORTHO05D013092 9.4e-08 61.2 181 28.7
Rhsim02G0087900 Rhododendron simsii HOM05D008403 ORTHO05D010317 9.4e-08 61.2 164 30.5
Sabra05G0148700 Salix brachista HOM05D010921 ORTHO05D013092 1.2e-07 60.8 184 29.9
Sp6g11920 Schrenkiella parvula HOM05D007751 ORTHO05D009813 1.2e-07 60.8 120 34.2
Migut.C00973 Erythranthe guttata HOM05D011489 ORTHO05D014472 1.6e-07 60.5 159 28.9
Sabra01G0083000 Salix brachista HOM05D023468 ORTHO05D022406 1.6e-07 60.5 182 30.8
Ca_26810_v3 Cicer arietinum L. HOM05D004894 ORTHO05D005689 2.1e-07 60.1 98 33.7
THA.LOC104800050 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 2.1e-07 60.1 107 35.5
SGA_v2.0_scaffold355G49762 Striga asiatica HOM05D004113 ORTHO05D005233 2.7e-07 59.7 119 35.3
COL.COLO4_08899 Corchorus olitorius HOM05D007679 ORTHO05D009560 4.7e-07 58.9 194 26.8
COL.COLO4_13382 Corchorus olitorius HOM05D007679 ORTHO05D009560 8.0e-07 58.2 76 36.8
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 8.0e-07 58.2 180 32.8
PSO675G4416 Papaver somniferum HOM05D008403 ORTHO05D010317 1.0e-06 57.8 188 29.8
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 1.4e-06 57.4 179 32.4
PSO732G0094 Papaver somniferum HOM05D008403 ORTHO05D010317 1.8e-06 57.0 182 28.6
SHI09077 Sapria himalayana HOM05D010921 ORTHO05D013092 1.8e-06 57.0 150 32.7
CSS0042410 Camellia sinensis var. sinensis HOM05D007679 ORTHO05D009560 2.3e-06 56.6 198 29.3
DCAR_028534 Daucus carota HOM05D004113 ORTHO05D005233 2.3e-06 56.6 146 34.9
Potri.001G109700 Populus trichocarpa HOM05D023468 ORTHO05D022406 2.3e-06 56.6 173 29.5
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 2.3e-06 56.6 166 28.9
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 3.0e-06 56.2 124 33.9
MBI09_g40718_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 3.0e-06 56.2 182 29.7
THA.LOC104824471 Tarenaya hassleriana HOM05D001445 ORTHO05D001261 3.0e-06 56.2 169 29.6
MBI09_g02146_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 4.0e-06 55.8 143 32.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 5.2e-06 55.5 166 28.9
MBI09_g01820_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 5.2e-06 55.5 149 29.5
PSO732G0597 Papaver somniferum HOM05D008403 ORTHO05D010317 5.2e-06 55.5 165 24.8
Thecc.10G106100 Theobroma cacao HOM05D015467 ORTHO05D001819 5.2e-06 55.5 166 28.3
COL.COLO4_13383 Corchorus olitorius HOM05D007679 ORTHO05D009560 6.7e-06 55.1 65 40.0
PSO675G0961 Papaver somniferum HOM05D008403 ORTHO05D010317 6.7e-06 55.1 181 27.1
THA.LOC104799810 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 6.7e-06 55.1 141 31.2
CAN.G1163.3 Capsicum annuum HOM05D004113 ORTHO05D005233 8.8e-06 54.7 148 29.7


User provided reference genes

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