Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 1.5e-49 199.1 93 100.0
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 9.9e-22 106.7 61 86.9
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 3.7e-21 104.8 60 88.3
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 4.9e-21 104.4 60 86.7
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 3.2e-20 101.7 60 83.3
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 7.1e-20 100.5 61 80.3
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 9.2e-20 100.1 60 81.7
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 2.1e-19 99.0 61 82.0
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 2.7e-19 98.6 61 80.3
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 6.0e-19 97.4 60 78.3
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 7.8e-19 97.1 60 78.3
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 7.8e-19 97.1 61 77.0
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 1.0e-18 96.7 60 78.3
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 1.7e-18 95.9 61 80.3
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 3.0e-18 95.1 60 75.0
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 3.0e-18 95.1 60 80.0
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 3.9e-18 94.7 60 75.0
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 5.1e-18 94.4 60 75.0
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 5.1e-18 94.4 60 75.0
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 6.6e-18 94.0 61 73.8
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 6.6e-18 94.0 60 76.7
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.9e-17 92.4 60 75.0
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 2.5e-17 92.0 60 71.7
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.5e-17 92.0 61 72.1
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 3.3e-17 91.7 60 71.7
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 5.6e-17 90.9 62 69.4
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 7.3e-17 90.5 60 73.3
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 9.6e-17 90.1 60 71.7
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 9.6e-17 90.1 61 75.4
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 1.2e-16 89.7 60 71.7
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.2e-16 89.7 60 73.3
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 1.6e-16 89.4 70 68.6
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 1.6e-16 89.4 60 71.7
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 2.1e-16 89.0 60 73.3
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 2.1e-16 89.0 60 73.3
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 2.8e-16 88.6 60 73.3
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 2.8e-16 88.6 60 70.0
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.7e-16 87.8 60 68.3
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.7e-16 87.8 60 68.3
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 4.7e-16 87.8 60 68.3
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 4.7e-16 87.8 60 73.3
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 4.7e-16 87.8 60 73.3
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 4.7e-16 87.8 60 71.7
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 6.2e-16 87.4 60 70.0
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 6.2e-16 87.4 60 71.7
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 6.2e-16 87.4 60 70.0
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 8.1e-16 87.0 60 70.0
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.1e-15 86.7 60 68.3
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.4e-15 86.3 60 73.3
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 2.4e-15 85.5 60 68.3
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 2.4e-15 85.5 60 68.3
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 3.1e-15 85.1 60 68.3
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 4.0e-15 84.7 61 68.9
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 4.0e-15 84.7 59 71.2
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 4.0e-15 84.7 60 68.3
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 6.8e-15 84.0 60 65.0
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 8.9e-15 83.6 60 68.3
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 8.9e-15 83.6 60 70.0
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.5e-14 82.8 60 65.0
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 1.5e-14 82.8 61 65.6
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 2.0e-14 82.4 60 71.7
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 2.6e-14 82.0 60 68.3
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 2.6e-14 82.0 60 66.7
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 3.4e-14 81.6 60 66.7
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.4e-14 81.6 60 66.7
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 3.4e-14 81.6 60 68.3
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 4.4e-14 81.3 60 70.0
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 4.4e-14 81.3 59 69.5
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.4e-14 81.3 60 70.0
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.4e-14 81.3 60 70.0
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 4.4e-14 81.3 60 66.7
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 4.4e-14 81.3 60 65.0
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 4.4e-14 81.3 60 68.3
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 4.4e-14 81.3 61 65.6
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 5.8e-14 80.9 60 66.7
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 5.8e-14 80.9 60 68.3
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 5.8e-14 80.9 61 65.6
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 7.6e-14 80.5 60 65.0
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 7.6e-14 80.5 60 66.7
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 9.9e-14 80.1 60 68.3
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 9.9e-14 80.1 60 66.7
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 1.3e-13 79.7 56 73.2
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 1.3e-13 79.7 60 65.0
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 1.7e-13 79.3 60 65.0
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 2.2e-13 79.0 60 65.0
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 2.2e-13 79.0 61 65.6
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.2e-13 79.0 61 63.9
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 2.2e-13 79.0 61 67.2
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.9e-13 78.6 60 63.3
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 3.8e-13 78.2 61 67.2
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 6.4e-13 77.4 61 62.3
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 6.4e-13 77.4 61 63.9
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 6.4e-13 77.4 60 63.3
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 6.4e-13 77.4 60 63.3
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 6.4e-13 77.4 55 70.9
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.1e-12 76.6 61 65.6
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.4e-12 76.3 60 65.0
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.9e-12 75.9 59 66.1
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 2.4e-12 75.5 61 63.9
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 2.4e-12 75.5 47 80.9
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 2.4e-12 75.5 54 70.4
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 3.2e-12 75.1 56 69.6
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 3.2e-12 75.1 54 66.7
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 3.2e-12 75.1 60 61.7
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 4.2e-12 74.7 60 60.0
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.2e-12 74.7 60 65.0
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 4.2e-12 74.7 61 63.9
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 5.4e-12 74.3 62 61.3
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 7.1e-12 73.9 61 62.3
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 9.3e-12 73.6 61 60.7
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 1.2e-11 73.2 61 62.3
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.6e-11 72.8 61 62.3
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 2.1e-11 72.4 61 60.7
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.1e-11 72.4 61 60.7
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 2.1e-11 72.4 60 61.7
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 2.1e-11 72.4 60 61.7
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 2.7e-11 72.0 56 66.1
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 4.6e-11 71.2 60 63.3
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.7e-10 69.3 59 61.0
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.3e-10 68.9 60 60.0
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.3e-10 68.9 60 60.0
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 5.1e-10 67.8 60 56.7
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 8.7e-10 67.0 56 58.9
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.5e-09 66.2 55 61.8
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 4.3e-09 64.7 53 62.3
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.6e-08 62.8 52 69.2
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.6e-08 62.8 52 67.3
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 2.1e-08 62.4 35 80.0
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.8e-07 59.3 63 50.8
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 9.0e-07 57.0 57 49.1
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 2.0e-06 55.8 57 52.6


User provided reference genes

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