Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 3.9e-72 274.6 132 100.0
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 7.3e-71 270.4 132 98.5
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 1.3e-40 169.9 141 67.4
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 2.5e-39 165.6 141 66.7
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 2.8e-38 162.2 132 66.7
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 5.0e-35 151.4 139 61.2
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 1.9e-34 149.4 141 56.7
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 3.2e-34 148.7 142 57.0
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 7.9e-33 144.1 142 57.0
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 2.3e-32 142.5 138 60.9
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 3.9e-32 141.7 147 53.1
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 8.7e-32 140.6 132 58.3
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 2.5e-31 139.0 132 59.1
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 3.3e-31 138.7 146 52.1
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 3.7e-30 135.2 132 57.6
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 1.4e-29 133.3 132 56.8
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 1.8e-29 132.9 138 55.1
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 1.8e-29 132.9 132 56.8
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 1.8e-29 132.9 132 57.6
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 1.8e-29 132.9 135 56.3
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 2.4e-29 132.5 121 59.5
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 4.1e-29 131.7 139 52.5
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 5.3e-29 131.3 132 53.8
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 6.9e-29 131.0 146 49.3
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 9.1e-29 130.6 136 56.6
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.2e-28 130.2 136 56.6
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 3.4e-28 128.6 132 54.5
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 1.0e-27 127.1 134 57.5
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 1.3e-27 126.7 134 53.7
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 1.7e-27 126.3 141 53.2
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.7e-27 126.3 133 56.4
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 2.9e-27 125.6 134 56.0
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 2.9e-27 125.6 134 56.0
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 2.9e-27 125.6 133 53.4
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 6.5e-27 124.4 140 52.9
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 1.1e-26 123.6 140 52.9
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 7.2e-26 120.9 136 52.9
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 1.2e-25 120.2 133 49.6
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 2.1e-25 119.4 141 47.5
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 4.7e-25 118.2 139 49.6
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 6.1e-25 117.9 134 54.5
Potri.002G062950 Populus trichocarpa HOM05D007964 ORTHO05D010090 1.0e-24 117.1 138 51.4
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 1.4e-24 116.7 120 50.0
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 5.1e-24 114.8 99 57.6
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 5.1e-24 114.8 135 51.1
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 6.7e-24 114.4 126 50.0
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 1.5e-23 113.2 137 48.9
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 2.0e-23 112.8 132 49.2
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 4.4e-23 111.7 134 50.0
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 7.4e-23 110.9 102 59.8
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 9.7e-23 110.5 119 50.4
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 1.7e-22 109.8 118 50.0
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 2.8e-22 109.0 102 57.8
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 3.7e-22 108.6 123 54.5
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 8.2e-22 107.5 127 51.2
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 1.1e-21 107.1 99 55.6
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 1.4e-21 106.7 133 45.9
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 1.4e-21 106.7 118 50.8
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 1.4e-21 106.7 100 57.0
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 2.4e-21 105.9 126 46.8
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 4.1e-21 105.1 127 47.2
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 5.3e-21 104.8 125 44.8
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 9.1e-21 104.0 116 50.9
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 9.1e-21 104.0 132 48.5
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 1.5e-20 103.2 122 46.7
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 4.5e-20 101.7 122 45.9
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 1.7e-19 99.8 121 44.6
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 1.7e-19 99.8 121 44.6
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 2.2e-19 99.4 137 43.8
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 2.9e-19 99.0 103 54.4
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 8.5e-19 97.4 124 44.4
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 5.5e-18 94.7 123 43.1
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 9.7e-15 84.0 62 69.4
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 2.4e-13 79.3 108 43.5
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 2.6e-12 75.9 98 38.8
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 4.5e-12 75.1 129 36.4
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 1.2e-07 60.5 46 60.9
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 1.5e-07 60.1 52 50.0
Lalb_Chr07g0178561 Lupinus albus HOM05D002803 ORTHO05D003089 5.7e-07 58.2 44 56.8
unitig_52.g17150 Utricularia gibba HOM05D002803 ORTHO05D003089 7.5e-07 57.8 109 35.8
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 9.7e-07 57.4 43 53.5
C08p04510 Brassica napus HOM05D002803 ORTHO05D003089 1.3e-06 57.0 100 32.0
AL1G55870 Arabidopsis lyrata HOM05D002803 ORTHO05D003089 1.7e-06 56.6 52 44.2
CiPaw.16G083600 Carya illinoinensis HOM05D002803 ORTHO05D003089 2.2e-06 56.2 42 57.1
Sopen06g026510 Solanum pennellii HOM05D002803 ORTHO05D003089 2.2e-06 56.2 53 49.1
THA.LOC104801662 Tarenaya hassleriana HOM05D002803 ORTHO05D003089 2.2e-06 56.2 49 53.1
Actinidia38399 Actinidia chinensis HOM05D002803 ORTHO05D003089 2.8e-06 55.8 43 53.5
BcaC07g37087 Brassica carinata HOM05D002803 ORTHO05D003089 2.8e-06 55.8 100 31.0
A08p04240 Brassica napus HOM05D002803 ORTHO05D003089 2.8e-06 55.8 100 31.0
BolC8t47256H Brassica oleracea HOM05D002803 ORTHO05D003089 2.8e-06 55.8 100 31.0
BraA08t32452Z Brassica rapa HOM05D002803 ORTHO05D003089 2.8e-06 55.8 100 31.0
CiPaw.16G083500 Carya illinoinensis HOM05D002803 ORTHO05D003089 2.8e-06 55.8 42 57.1
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.8e-06 55.8 43 51.2
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.8e-06 55.8 43 51.2
CANSAT80G1035 Cannabis sativa HOM05D002803 ORTHO05D003089 3.7e-06 55.5 51 49.0
Sed0004956 Sechium edule HOM05D002803 ORTHO05D003089 3.7e-06 55.5 43 55.8
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 4.8e-06 55.1 43 51.2
Sed0021519 Sechium edule HOM05D002803 ORTHO05D003089 4.8e-06 55.1 59 44.1
TAR374G0994 Trochodendron aralioides HOM05D002803 ORTHO05D003089 4.8e-06 55.1 43 51.2
Haze_17431 Corylus avellana HOM05D002803 ORTHO05D003089 6.3e-06 54.7 43 53.5
Dinv16513 Davidia involucrata HOM05D002803 ORTHO05D003089 6.3e-06 54.7 43 51.2
Glyma.17G121900 Glycine max HOM05D002803 ORTHO05D003089 6.3e-06 54.7 79 36.7
Gohir.A12G265300 Gossypium hirsutum HOM05D002803 ORTHO05D003089 6.3e-06 54.7 54 48.1
Gohir.D12G265500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 6.3e-06 54.7 54 48.1
Gorai.008G285200 Gossypium raimondii HOM05D002803 ORTHO05D003089 6.3e-06 54.7 54 48.1
HanXRQChr02g0042761 Helianthus annuus HOM05D002803 ORTHO05D003089 6.3e-06 54.7 39 59.0
Potri.004G088300 Populus trichocarpa HOM05D008294 ORTHO05D010468 6.3e-06 54.7 137 26.3
Aa31LG10G4930 Aethionema arabicum HOM05D002803 ORTHO05D003089 8.2e-06 54.3 46 47.8
AT1G49000 Arabidopsis thaliana HOM05D002803 ORTHO05D003089 8.2e-06 54.3 42 50.0
MSTRG.2266 Avicennia marina HOM05D002803 ORTHO05D003089 8.2e-06 54.3 118 31.4
BcaB04g17373 Brassica carinata HOM05D002803 ORTHO05D003089 8.2e-06 54.3 64 42.2
Carub.0001s3818 Capsella rubella HOM05D002803 ORTHO05D003089 8.2e-06 54.3 45 48.9
AUR62032184 Chenopodium quinoa HOM05D002803 ORTHO05D003089 8.2e-06 54.3 51 49.0
AUR62036944 Chenopodium quinoa HOM05D002803 ORTHO05D003089 8.2e-06 54.3 51 49.0
MD13G1047600 Malus domestica HOM05D002803 ORTHO05D003089 8.2e-06 54.3 68 38.2
PSO135G0167 Papaver somniferum HOM05D002803 ORTHO05D003089 8.2e-06 54.3 55 47.3
Solyc06g069250.2 Solanum lycopersicum HOM05D002803 ORTHO05D003089 8.2e-06 54.3 53 47.2
TAR622G0697 Trochodendron aralioides HOM05D002803 ORTHO05D003089 8.2e-06 54.3 43 51.2


User provided reference genes

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