Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 9.8e-155 550.1 271 100.0
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 5.6e-142 507.7 340 78.8
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 5.5e-81 305.1 225 70.7
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 2.0e-75 286.6 223 67.3
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 4.5e-75 285.4 225 64.0
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.9e-73 280.0 226 64.6
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.2e-73 279.3 225 64.4
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 3.2e-73 279.3 218 64.7
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 4.2e-73 278.9 225 64.0
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.6e-72 276.9 225 63.6
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 6.1e-72 275.0 225 64.0
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 1.8e-71 273.5 231 61.9
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 2.3e-71 273.1 218 63.8
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 2.3e-71 273.1 228 61.8
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 5.2e-71 271.9 227 61.2
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 1.5e-70 270.4 225 64.9
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 1.5e-70 270.4 218 64.7
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.3e-70 269.2 218 64.2
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 5.7e-70 268.5 217 63.1
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 3.7e-69 265.8 222 62.6
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 8.2e-69 264.6 222 59.9
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 8.2e-69 264.6 227 59.5
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.1e-68 262.7 222 59.9
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 4.1e-68 262.3 218 62.4
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 4.1e-68 262.3 217 63.6
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 5.3e-68 261.9 225 59.6
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 7.0e-68 261.5 225 61.8
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 9.1e-68 261.2 218 62.8
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.2e-67 260.8 217 58.5
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 2.0e-67 260.0 245 57.6
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.7e-67 259.6 222 59.0
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 2.7e-67 259.6 225 60.9
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 4.5e-67 258.8 225 60.0
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.3e-66 257.3 245 57.1
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.8e-66 255.8 218 61.5
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 5.0e-66 255.4 217 61.8
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 5.0e-66 255.4 218 61.5
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 8.5e-66 254.6 225 56.0
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.1e-65 254.2 218 61.5
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 4.2e-65 252.3 225 56.4
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 5.5e-65 251.9 223 60.1
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 9.4e-65 251.1 245 56.3
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 9.4e-65 251.1 217 61.3
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.2e-64 250.8 225 54.2
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.2e-64 250.8 225 54.2
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 2.7e-64 249.6 224 54.5
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 4.7e-64 248.8 225 53.8
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 6.1e-64 248.4 218 58.7
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.0e-63 247.7 206 65.5
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 6.8e-63 245.0 278 51.8
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 3.4e-62 242.7 226 58.4
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 5.7e-62 241.9 252 50.4
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 9.8e-62 241.1 225 50.7
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 1.4e-60 237.3 217 56.7
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.8e-60 236.9 220 54.1
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 5.4e-60 235.3 227 52.0
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 1.7e-58 230.3 225 52.4
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.7e-58 230.3 196 60.2
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 5.0e-58 228.8 245 49.4
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.9e-57 226.9 255 47.5
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 7.2e-57 224.9 183 61.7
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 4.7e-56 222.2 206 53.9
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 4.7e-56 222.2 223 55.2
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 4.7e-56 222.2 183 63.4
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 6.1e-56 221.9 221 51.6
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 6.1e-56 221.9 227 51.5
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 6.1e-56 221.9 222 51.4
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 8.0e-56 221.5 227 51.1
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 1.4e-55 220.7 222 52.7
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 1.4e-55 220.7 222 52.7
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.8e-55 220.3 222 52.3
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 4.0e-55 219.2 222 51.8
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 4.0e-55 219.2 222 51.8
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 3.4e-54 216.1 216 50.5
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 2.2e-53 213.4 220 50.0
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.8e-53 213.0 225 50.2
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 3.7e-53 212.6 220 50.0
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 4.9e-53 212.2 228 53.5
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 1.4e-52 210.7 182 57.7
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 4.1e-52 209.1 220 50.5
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.2e-51 207.6 225 48.4
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 2.7e-51 206.5 225 48.0
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 8.6e-50 201.4 183 54.6
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.1e-49 201.1 226 47.3
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.9e-49 200.3 225 47.6
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.5e-49 199.9 263 43.0
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 9.5e-49 198.0 226 46.9
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.2e-48 197.6 182 52.7
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 4.9e-45 185.7 205 46.3
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 3.5e-43 179.5 225 43.1
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 2.3e-42 176.8 219 47.5
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 8.6e-42 174.9 233 47.2
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.2e-40 171.0 183 50.3
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 1.6e-40 170.6 179 46.9
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 3.1e-39 166.4 225 42.7
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 7.5e-38 161.8 217 41.5
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 7.5e-38 161.8 223 37.2
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 2.9e-37 159.8 225 39.1
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 3.7e-37 159.5 225 40.0
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.4e-36 157.5 219 41.6
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.9e-36 157.1 182 48.9
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 7.8e-35 151.8 225 40.4
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.3e-34 151.0 224 36.6
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 9.5e-33 144.8 167 47.3
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 2.2e-29 133.7 215 38.1
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 2.4e-28 130.2 218 35.8
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 4.1e-28 129.4 242 34.3
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.2e-27 127.9 223 31.8
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 2.7e-27 126.7 219 37.9
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 1.3e-26 124.4 116 53.4
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.7e-26 124.0 202 40.6
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 3.0e-26 123.2 227 33.0
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 4.3e-25 119.4 119 52.9
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 5.6e-25 119.0 224 34.4
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 1.6e-24 117.5 95 61.1
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 2.8e-24 116.7 149 44.3
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 8.1e-24 115.2 105 54.3
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 4.0e-23 112.8 229 32.3
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.5e-22 110.9 114 50.0
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 3.4e-22 109.8 103 50.5
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.4e-20 103.6 138 42.8
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 7.1e-20 102.1 118 47.5
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 4.3e-17 92.8 99 52.5
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 2.1e-16 90.5 127 40.9
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 2.1e-16 90.5 142 39.4
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 2.1e-16 90.5 142 39.4
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 2.8e-16 90.1 80 52.5
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.8e-15 87.4 184 35.9
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.9e-12 77.4 80 46.2
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 3.9e-10 69.7 113 33.6
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 1.1e-09 68.2 164 29.3
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 2.1e-08 63.9 59 45.8
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 8.1e-08 62.0 61 44.3
Lsat_1_v5_gn_3_108880 Lactuca sativa HOM05D002370 ORTHO05D022851 3.1e-07 60.1 93 37.6
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 6.9e-07 58.9 90 37.8


User provided reference genes

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