Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 1.0e-145 520.0 255 100.0
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 2.3e-145 518.8 255 99.6
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 3.9e-137 491.5 254 93.3
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 1.9e-136 489.2 255 93.7
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 1.9e-136 489.2 255 93.7
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 5.6e-136 487.6 255 92.9
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.1e-134 483.4 254 92.5
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 3.1e-134 481.9 255 91.8
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 9.0e-134 480.3 255 91.0
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 3.8e-132 474.9 255 89.8
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 1.4e-131 473.0 256 89.8
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 2.5e-131 472.2 256 90.2
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 3.2e-131 471.9 256 89.8
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.2e-131 471.5 256 89.1
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 4.2e-131 471.5 256 89.8
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 1.6e-130 469.5 256 89.5
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 2.1e-130 469.2 256 90.2
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 3.5e-130 468.4 255 88.6
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 3.5e-130 468.4 255 88.6
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 3.5e-130 468.4 255 88.6
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 3.5e-130 468.4 256 89.5
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 6.0e-130 467.6 256 88.3
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 2.3e-129 465.7 256 89.1
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 3.9e-129 464.9 255 88.2
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 3.9e-129 464.9 256 88.7
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 3.9e-129 464.9 256 88.7
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 6.7e-129 464.2 256 88.3
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 8.7e-129 463.8 255 86.7
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 8.7e-129 463.8 253 88.5
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.1e-128 463.4 256 88.3
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.1e-128 463.4 256 88.3
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 1.1e-128 463.4 256 88.7
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 1.1e-128 463.4 256 87.9
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 1.1e-128 463.4 256 87.9
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 1.5e-128 463.0 256 87.5
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 1.9e-128 462.6 256 87.5
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 2.5e-128 462.2 255 87.8
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 9.6e-128 460.3 256 86.3
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 9.6e-128 460.3 253 87.7
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 1.3e-127 459.9 256 88.7
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 2.1e-127 459.1 256 87.9
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 2.8e-127 458.8 256 86.7
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 6.2e-127 457.6 256 86.7
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 6.2e-127 457.6 255 86.7
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 6.2e-127 457.6 256 87.1
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 6.2e-127 457.6 256 87.1
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 1.4e-126 456.4 256 88.3
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 2.4e-126 455.7 263 85.2
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 3.1e-126 455.3 255 86.7
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 5.3e-126 454.5 256 86.3
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 1.2e-125 453.4 256 86.3
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 7.6e-125 450.7 256 86.7
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 8.4e-124 447.2 256 84.4
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 1.1e-123 446.8 256 85.5
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 1.9e-123 446.0 256 84.8
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 1.9e-123 446.0 256 85.5
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 3.2e-123 445.3 256 85.5
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 1.2e-122 443.4 254 83.5
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.6e-122 443.0 255 86.7
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 2.1e-122 442.6 256 84.8
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 2.1e-122 442.6 256 84.8
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 2.1e-122 442.6 256 84.8
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 2.1e-122 442.6 256 84.8
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 2.1e-122 442.6 256 84.8
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.5e-122 441.8 256 85.2
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 3.5e-122 441.8 256 84.4
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 4.6e-122 441.4 301 74.4
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.0e-121 440.3 256 84.8
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 1.3e-121 439.9 256 83.6
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 1.8e-121 439.5 256 83.6
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 1.8e-121 439.5 256 83.6
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 3.9e-121 438.3 256 83.6
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 5.1e-121 438.0 256 83.6
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 5.1e-121 438.0 256 83.6
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.9e-120 436.0 270 80.0
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 4.3e-120 434.9 249 84.3
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 9.7e-120 433.7 258 80.6
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 1.6e-119 433.0 249 83.9
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 1.6e-119 433.0 262 82.1
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 2.2e-119 432.6 270 78.9
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 8.2e-119 430.6 256 83.2
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 8.2e-119 430.6 256 83.2
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 8.2e-119 430.6 256 83.2
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 1.1e-118 430.3 256 82.4
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 1.8e-118 429.5 256 83.6
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 2.6e-117 425.6 257 79.4
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 4.5e-117 424.9 255 81.6
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 7.7e-117 424.1 255 80.4
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 1.0e-116 423.7 256 80.5
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 1.7e-116 422.9 230 89.6
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 1.9e-115 419.5 255 80.0
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 4.3e-112 408.3 249 79.5
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 3.7e-111 405.2 253 78.3
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 6.9e-110 401.0 256 76.6
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 7.7e-109 397.5 213 88.3
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.2e-108 396.0 250 76.8
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 6.5e-108 394.4 281 73.7
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 1.5e-104 383.3 255 77.3
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 4.4e-104 381.7 221 83.7
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 1.7e-103 379.8 231 78.4
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 1.8e-102 376.3 256 75.4
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 3.1e-102 375.6 214 84.6
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 2.6e-96 355.9 249 70.7
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 1.4e-94 350.1 247 70.0
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.7e-92 343.2 198 84.8
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 2.2e-92 342.8 251 67.7
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 9.4e-91 337.4 250 66.8
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 4.0e-89 332.0 203 78.3
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 9.7e-88 327.4 251 65.7
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 1.4e-78 297.0 159 89.3
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 1.8e-70 270.0 169 76.3
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 5.4e-70 268.5 152 85.5
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 4.3e-67 258.8 132 92.4
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 1.4e-65 253.8 141 87.2
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 3.2e-62 242.7 254 50.8
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 7.0e-62 241.5 248 48.8
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 1.0e-60 237.7 198 65.2
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 3.1e-57 226.1 130 84.6
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.1e-54 215.7 116 83.6
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 8.6e-52 208.0 267 42.7
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 5.6e-51 205.3 112 87.5
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 9.5e-51 204.5 156 64.7
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 2.1e-50 203.4 114 86.8
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 1.5e-48 197.2 105 90.5
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 1.3e-47 194.1 105 86.7
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 7.8e-45 184.9 105 84.8
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 8.6e-44 181.4 105 83.8
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 5.6e-43 178.7 256 45.3
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 1.5e-40 170.6 104 81.7
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 1.3e-34 151.0 91 72.5
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 3.6e-34 149.4 116 66.4
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.5e-27 127.5 102 62.7
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 3.3e-27 126.3 67 91.0
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 4.0e-25 119.4 96 63.5
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 8.4e-23 111.7 58 89.7
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.4e-14 84.3 55 72.7
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 1.0e-12 78.2 60 68.3
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 2.6e-08 63.5 40 80.0


User provided reference genes

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