Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 8.1e-191 670.2 336 100.0
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.5e-157 559.7 322 83.9
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.9e-156 555.4 322 83.9
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.1e-150 537.0 324 79.0
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.1e-150 535.4 317 80.8
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 2.6e-149 532.3 392 69.1
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.3e-148 530.0 317 76.7
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 6.5e-148 527.7 317 76.7
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 2.1e-146 522.7 312 76.3
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.0e-145 520.4 319 77.1
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.4e-145 520.0 316 77.5
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.4e-145 520.0 321 76.6
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 5.1e-145 518.1 316 78.2
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 8.8e-145 517.3 317 75.7
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.1e-144 516.9 312 76.6
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.5e-144 515.8 321 75.4
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 2.5e-144 515.8 312 74.4
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 4.3e-144 515.0 320 76.2
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 5.7e-144 514.6 315 77.8
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 2.8e-143 512.3 312 76.6
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.8e-143 512.3 321 75.4
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 3.7e-143 511.9 312 75.6
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 8.2e-143 510.8 322 77.0
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 8.2e-143 510.8 321 75.1
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 1.8e-142 509.6 322 76.7
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.8e-142 509.6 322 76.7
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 6.9e-142 507.7 321 74.5
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 2.0e-141 506.1 311 75.6
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 5.9e-141 504.6 356 70.2
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 5.9e-141 504.6 322 75.8
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 7.7e-141 504.2 312 74.4
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.0e-140 503.8 315 75.2
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 2.9e-140 502.3 323 75.9
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 5.0e-140 501.5 313 75.1
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 5.5e-139 498.0 312 73.4
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 7.2e-139 497.7 368 66.8
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 6.1e-138 494.6 312 74.0
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 6.1e-138 494.6 334 71.6
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 7.9e-138 494.2 315 74.3
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.0e-137 493.8 321 73.2
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.0e-137 493.8 321 73.2
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 3.0e-137 492.3 337 71.8
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 8.8e-137 490.7 293 79.5
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.1e-136 490.3 312 71.5
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 2.6e-136 489.2 314 73.6
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 9.7e-136 487.3 319 72.1
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.8e-135 485.7 332 71.7
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 1.4e-134 483.4 316 75.3
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 5.3e-134 481.5 321 71.3
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 1.5e-133 479.9 323 73.1
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 2.6e-133 479.2 320 70.9
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.6e-133 479.2 328 72.9
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 4.5e-133 478.4 321 71.3
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 7.7e-133 477.6 312 72.4
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.7e-132 476.5 320 71.2
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.7e-132 476.5 364 64.8
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 2.1e-130 469.5 322 71.1
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 6.1e-130 468.0 306 74.5
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.0e-129 467.2 316 72.2
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 5.2e-129 464.9 323 70.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 8.8e-129 464.2 323 70.0
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.8e-129 464.2 338 65.4
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.8e-129 464.2 338 65.4
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 1.1e-128 463.8 323 70.0
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 4.4e-128 461.8 324 69.1
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 8.2e-127 457.6 313 70.3
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 8.2e-127 457.6 313 71.9
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.4e-126 456.8 313 71.6
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 5.3e-126 454.9 319 68.3
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 5.3e-126 454.9 312 69.9
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 7.0e-126 454.5 298 73.2
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 9.1e-126 454.1 319 68.0
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.3e-124 450.3 313 70.0
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 5.0e-124 448.4 320 66.2
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 2.7e-122 442.6 316 69.6
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 3.6e-122 442.2 315 68.3
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 2.3e-121 439.5 323 65.6
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.3e-121 439.5 316 69.0
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 5.2e-121 438.3 316 67.1
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 8.8e-121 437.6 298 71.1
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.2e-120 437.2 317 68.1
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.6e-120 436.0 277 74.0
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 1.4e-118 430.3 302 67.5
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.4e-118 429.5 262 76.0
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 5.3e-118 428.3 325 64.0
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.7e-116 423.3 306 68.0
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.5e-116 421.4 281 73.0
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 5.5e-115 418.3 363 60.3
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.8e-113 413.3 270 73.3
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.3e-113 412.9 270 74.1
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 3.0e-113 412.5 307 62.9
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 5.2e-113 411.8 261 74.7
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 6.3e-111 404.8 322 64.3
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 2.3e-108 396.4 307 62.9
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 7.2e-107 391.3 321 60.1
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 4.7e-106 388.7 251 73.7
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.4e-105 387.1 313 58.1
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 6.8e-105 384.8 321 59.2
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 7.5e-104 381.3 327 61.8
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 1.3e-103 380.6 248 73.8
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 2.8e-103 379.4 247 71.3
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 4.9e-103 378.6 316 59.5
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.8e-102 376.7 316 60.1
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.1e-102 375.9 247 70.4
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 5.4e-102 375.2 394 52.8
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.7e-100 370.2 211 80.6
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 8.6e-100 367.9 327 60.6
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.0e-97 360.9 328 55.8
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.8e-97 360.1 227 73.6
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.0e-96 356.7 321 61.1
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 3.4e-96 355.9 321 60.7
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.3e-95 354.0 332 57.8
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.9e-95 352.8 324 59.9
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.7e-95 352.4 322 54.7
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 8.3e-95 351.3 325 55.4
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.6e-93 345.5 323 59.8
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 1.7e-92 343.6 296 58.1
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 2.3e-92 343.2 325 59.7
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 1.2e-90 337.4 291 58.4
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 4.0e-89 332.4 384 47.4
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.1e-86 324.3 283 60.1
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 2.8e-82 309.7 307 52.4
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.0e-80 303.5 256 58.6
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 4.3e-67 259.2 318 43.7
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.8e-66 256.5 301 44.2
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.8e-63 246.1 302 43.4
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.2e-62 243.0 305 42.6
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 7.8e-61 238.4 153 74.5
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 8.7e-60 235.0 139 76.3
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.5e-59 234.2 251 48.6
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 4.5e-56 222.6 242 50.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 5.4e-54 215.7 113 88.5
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.2e-53 214.5 247 45.3
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 5.6e-51 205.7 153 66.0
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.8e-50 203.4 160 59.4
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 3.4e-48 196.4 254 41.7
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 4.9e-47 192.6 199 46.2
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 2.5e-46 190.3 329 38.6
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.5e-43 181.0 286 37.4
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.5e-40 171.0 242 40.9
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 6.1e-37 159.1 287 35.5
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 7.9e-37 158.7 101 69.3
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 9.7e-35 151.8 289 34.6
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.2e-29 134.8 247 35.6
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 2.3e-28 130.6 256 32.0
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.7e-28 129.0 222 34.7
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.1e-25 121.7 362 28.7
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 4.5e-24 116.3 72 77.8
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 4.5e-24 116.3 72 77.8
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.0e-23 115.2 72 76.4
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.7e-23 114.4 256 30.1
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 3.8e-23 113.2 113 44.2
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 3.8e-23 113.2 84 63.1
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.0e-23 112.8 153 39.9
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 8.5e-23 112.1 114 41.2
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 1.9e-22 110.9 300 29.7
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 3.7e-18 96.7 314 26.8
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 2.4e-17 94.0 324 25.6
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 4.1e-17 93.2 211 32.2
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 1.5e-16 91.3 60 70.0
Glyma.20G173800 Glycine max HOM05D004272 ORTHO05D005020 1.1e-14 85.1 100 51.0
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.1e-14 85.1 80 55.0
CARHR290880 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.2e-13 81.6 69 55.1
COL.COLO4_33299 Corchorus olitorius HOM05D004272 ORTHO05D005020 9.7e-11 72.0 45 68.9
PGR042G2939 Punica granatum HOM05D002901 ORTHO05D003183 8.2e-10 68.9 50 70.0


User provided reference genes

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