Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 1.3e-51 206.1 103 100.0
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 2.9e-30 135.2 80 81.2
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 4.9e-30 134.4 80 78.8
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 6.4e-30 134.0 103 65.0
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 6.4e-30 134.0 84 77.4
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 8.3e-30 133.7 84 78.6
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 8.3e-30 133.7 84 78.6
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 8.3e-30 133.7 84 78.6
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 8.3e-30 133.7 81 81.5
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 8.3e-30 133.7 84 76.2
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 8.3e-30 133.7 83 73.5
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 1.1e-29 133.3 82 75.6
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 1.1e-29 133.3 83 75.9
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 1.4e-29 132.9 113 61.1
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 1.4e-29 132.9 80 78.8
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 1.9e-29 132.5 83 71.1
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 2.4e-29 132.1 82 74.4
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 2.4e-29 132.1 83 74.7
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 2.4e-29 132.1 80 77.5
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 3.2e-29 131.7 77 80.5
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 3.2e-29 131.7 84 75.0
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 3.2e-29 131.7 84 73.8
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 3.2e-29 131.7 84 76.2
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 3.2e-29 131.7 84 76.2
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 4.1e-29 131.3 83 77.1
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 4.1e-29 131.3 98 64.3
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 4.1e-29 131.3 80 77.5
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 4.1e-29 131.3 83 75.9
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 5.4e-29 131.0 83 74.7
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 5.4e-29 131.0 83 75.9
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 5.4e-29 131.0 83 74.7
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 5.4e-29 131.0 84 76.2
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 5.4e-29 131.0 81 79.0
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 7.1e-29 130.6 84 73.8
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 7.1e-29 130.6 84 73.8
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 7.1e-29 130.6 82 72.0
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 9.2e-29 130.2 84 72.6
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 9.2e-29 130.2 84 73.8
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 1.2e-28 129.8 82 73.2
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 1.2e-28 129.8 84 77.4
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 1.2e-28 129.8 96 67.7
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 1.2e-28 129.8 83 71.1
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 1.6e-28 129.4 83 73.5
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 1.6e-28 129.4 81 76.5
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 1.6e-28 129.4 99 64.6
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 2.1e-28 129.0 82 72.0
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 2.1e-28 129.0 82 72.0
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 2.1e-28 129.0 84 76.2
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 2.1e-28 129.0 82 70.7
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 2.1e-28 129.0 82 70.7
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 2.1e-28 129.0 81 74.1
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.1e-28 129.0 83 72.3
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 2.1e-28 129.0 83 72.3
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 2.1e-28 129.0 83 74.7
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 2.1e-28 129.0 83 74.7
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 2.1e-28 129.0 84 73.8
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 2.7e-28 128.6 102 61.8
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 2.7e-28 128.6 77 77.9
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 2.7e-28 128.6 84 75.0
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 2.7e-28 128.6 82 75.6
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 2.7e-28 128.6 82 70.7
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 2.7e-28 128.6 81 76.5
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 2.7e-28 128.6 83 74.7
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 3.5e-28 128.3 82 73.2
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 3.5e-28 128.3 100 65.0
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 4.6e-28 127.9 81 74.1
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 4.6e-28 127.9 84 73.8
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 4.6e-28 127.9 84 73.8
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 4.6e-28 127.9 84 72.6
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 6.0e-28 127.5 82 72.0
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 6.0e-28 127.5 82 72.0
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 6.0e-28 127.5 91 67.0
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 6.0e-28 127.5 82 74.4
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 6.0e-28 127.5 104 61.5
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 7.8e-28 127.1 83 69.9
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 7.8e-28 127.1 84 76.2
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 7.8e-28 127.1 82 70.7
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 7.8e-28 127.1 83 68.7
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 1.0e-27 126.7 83 68.7
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 1.0e-27 126.7 84 76.2
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 1.0e-27 126.7 84 73.8
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 1.0e-27 126.7 83 69.9
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.0e-27 126.7 82 72.0
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 1.0e-27 126.7 84 71.4
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 1.3e-27 126.3 85 69.4
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 1.3e-27 126.3 82 72.0
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 1.3e-27 126.3 84 72.6
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 1.3e-27 126.3 83 73.5
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.7e-27 125.9 82 74.4
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 1.7e-27 125.9 83 72.3
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 2.3e-27 125.6 82 70.7
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 2.3e-27 125.6 84 70.2
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 2.3e-27 125.6 83 69.9
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 3.0e-27 125.2 84 72.6
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 3.9e-27 124.8 83 69.9
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 3.9e-27 124.8 84 73.8
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 8.6e-27 123.6 83 67.5
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 8.6e-27 123.6 84 73.8
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 1.1e-26 123.2 83 68.7
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 1.1e-26 123.2 84 71.4
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 1.5e-26 122.9 104 59.6
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 1.5e-26 122.9 84 73.8
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 1.9e-26 122.5 86 70.9
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.9e-26 122.5 85 71.8
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.9e-26 122.5 83 67.5
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 2.5e-26 122.1 83 66.3
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 2.5e-26 122.1 84 69.0
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 4.3e-26 121.3 80 70.0
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 9.5e-26 120.2 84 72.6
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 1.6e-25 119.4 84 69.0
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 3.6e-25 118.2 80 68.8
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 1.1e-24 116.7 100 59.0
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 8.9e-24 113.6 83 68.7
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.2e-23 113.2 100 56.0
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 2.0e-23 112.5 94 60.6
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.6e-23 112.1 83 65.1
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 2.6e-23 112.1 83 65.1
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 9.9e-23 110.2 97 60.8
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 2.9e-22 108.6 85 61.2
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 8.4e-22 107.1 66 72.7
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 2.3e-19 99.0 80 57.5
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 2.3e-19 99.0 88 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 4.3e-18 94.7 80 57.5
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 7.3e-18 94.0 76 60.5
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 9.6e-18 93.6 60 76.7
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 1.6e-17 92.8 81 55.6
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 8.1e-17 90.5 94 43.6
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.2e-15 86.7 54 75.9
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 8.4e-14 80.5 53 71.7
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 2.4e-13 79.0 46 76.1
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 3.5e-12 75.1 53 64.2
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 6.0e-12 74.3 77 48.1
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.1e-10 70.1 47 70.2
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 9.6e-10 67.0 51 62.7
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 1.1e-08 63.5 89 42.7


User provided reference genes

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