Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p033307 Quercus lobata HOM05D003118 ORTHO05D003618 0.0e+00 1075.8 560 100.0
QL93p0326_0020 Quercus lobata HOM05D003118 ORTHO05D003618 2.6e-303 1044.6 545 99.8
Haze_08748 Corylus avellana HOM05D003118 ORTHO05D003618 6.3e-164 581.6 560 62.7
Cfa012251 Carpinus fangiana HOM05D003118 ORTHO05D003618 3.2e-160 569.3 549 62.5
Haze_08750 Corylus avellana HOM05D003118 ORTHO05D003618 9.4e-160 567.8 556 62.2
Dinv37591 Davidia involucrata HOM05D003118 ORTHO05D003618 2.3e-113 413.7 562 51.4
Dinv38896 Davidia involucrata HOM05D003118 ORTHO05D003618 2.4e-107 393.7 572 47.2
Prupe.5G107000 Prunus persica HOM05D003118 ORTHO05D003618 1.3e-100 371.3 562 48.4
Thecc.03G287000 Theobroma cacao HOM05D003118 ORTHO05D003618 1.6e-98 364.4 557 46.7
MD06G1091800 Malus domestica HOM05D003118 ORTHO05D003618 4.6e-98 362.8 554 48.2
CSS0022485 Camellia sinensis var. sinensis HOM05D003118 ORTHO05D003618 1.3e-97 361.3 559 46.3
TAR629G1012 Trochodendron aralioides HOM05D003118 ORTHO05D003618 3.0e-97 360.1 564 47.0
Duzib205G0707 Durio zibethinus HOM05D003118 ORTHO05D003618 3.9e-97 359.8 558 46.4
CiPaw.12G088800 Carya illinoinensis HOM05D003118 ORTHO05D003618 7.3e-96 355.5 552 48.2
MD14G1112600 Malus domestica HOM05D003118 ORTHO05D003618 2.1e-95 354.0 555 47.4
TAR375G0293 Trochodendron aralioides HOM05D003118 ORTHO05D003618 2.8e-95 353.6 562 45.7
Atru.chr9.2107 Acer truncatum HOM05D003118 ORTHO05D003618 5.1e-89 332.8 571 45.5
Manes.02G016600 Manihot esculenta HOM05D003118 ORTHO05D003618 3.1e-86 323.6 553 43.9
Nn6g32462 Nelumbo nucifera HOM05D003118 ORTHO05D003618 1.1e-83 315.1 568 43.1
RcHm_v2.0_Chr7g0196521 Rosa chinensis HOM05D003118 ORTHO05D003618 1.3e-81 308.1 530 45.3
Potri.003G133000 Populus trichocarpa HOM05D003118 ORTHO05D003618 1.8e-81 307.8 553 41.6
Ciclev10024541m.g Citrus clementina HOM05D003118 ORTHO05D003618 3.0e-81 307.0 550 41.8
Actinidia28342 Actinidia chinensis HOM05D003118 ORTHO05D003618 1.9e-80 304.3 571 40.3
Sabra03G0095300 Salix brachista HOM05D003118 ORTHO05D003618 5.6e-80 302.8 563 42.6
Gorai.004G137500 Gossypium raimondii HOM05D003118 ORTHO05D003618 9.6e-80 302.0 553 42.1
Lalb_Chr09g0320801 Lupinus albus HOM05D003118 ORTHO05D003618 5.8e-77 292.7 546 41.9
TWI81G0015 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 1.7e-76 291.2 556 41.9
Hma1.2p1_0216F.1_g091120 Hydrangea macrophylla HOM05D003118 ORTHO05D003618 1.1e-75 288.5 561 41.0
FAN13G0863 Fragaria x ananassa HOM05D003118 ORTHO05D003618 3.2e-75 287.0 530 42.6
MELO3C005717.2 Cucumis melo HOM05D003118 ORTHO05D003618 1.6e-74 284.6 539 42.3
FvH4_5g03250 Fragaria vesca HOM05D003118 ORTHO05D003618 1.6e-74 284.6 529 42.3
FAN18G4078 Fragaria x ananassa HOM05D003118 ORTHO05D003618 2.1e-74 284.3 529 42.0
Gohir.D08G134400 Gossypium hirsutum HOM05D003118 ORTHO05D003618 2.7e-74 283.9 547 41.1
Cc08_g15310 Coffea canephora HOM05D003118 ORTHO05D003618 6.0e-74 282.7 553 40.9
CsaV3_5G002370 Cucumis sativus L. HOM05D003118 ORTHO05D003618 1.3e-73 281.6 537 41.5
ClCG01G002310 Citrullus lanatus HOM05D003118 ORTHO05D003618 6.7e-73 279.3 539 41.7
Gohir.A08G114000 Gossypium hirsutum HOM05D003118 ORTHO05D003618 5.7e-72 276.2 546 41.6
Rhsim02G0236100 Rhododendron simsii HOM05D003118 ORTHO05D003618 5.3e-70 269.6 567 39.3
FAN04G2118 Fragaria x ananassa HOM05D003118 ORTHO05D003618 2.0e-69 267.7 524 41.2
FAN04G2035 Fragaria x ananassa HOM05D003118 ORTHO05D003618 2.6e-69 267.3 524 40.8
COL.COLO4_08355 Corchorus olitorius HOM05D003118 ORTHO05D003618 5.9e-69 266.2 573 40.7
Sed0011553 Sechium edule HOM05D003118 ORTHO05D003618 7.7e-69 265.8 534 41.4
Lj2A177T50 Lonicera japonica HOM05D003118 ORTHO05D003618 3.6e-66 256.9 434 44.7
vmacro11412 Vaccinium macrocarpon HOM05D003118 ORTHO05D003618 3.6e-66 256.9 558 39.8
FAN08G3653 Fragaria x ananassa HOM05D003118 ORTHO05D003618 6.7e-65 252.7 524 40.6
TWI14G1154 Tripterygium wilfordii HOM05D003118 ORTHO05D003618 5.3e-62 243.0 565 37.3
Sed0003885 Sechium edule HOM05D003118 ORTHO05D003618 6.9e-62 242.7 548 38.5
Aqoxy7G00197 Aquilegia oxysepala HOM05D003118 ORTHO05D003618 9.1e-62 242.3 552 39.7
LjContig00312_ERROPOS870357g0013212 Lotus japonicus HOM05D003118 ORTHO05D003618 1.3e-55 221.9 553 34.9
Glyma.11G020900 Glycine max HOM05D003118 ORTHO05D003618 2.8e-55 220.7 565 34.5
DCAR_004609 Daucus carota HOM05D003118 ORTHO05D003618 2.0e-53 214.5 550 36.2
MBI07_g11721_MAGBIO Magnolia biondii HOM05D003118 ORTHO05D003618 2.2e-52 211.1 555 34.4
Ca_24533_v3 Cicer arietinum L. HOM05D003118 ORTHO05D003618 1.4e-51 208.4 545 35.0
Glyma.01G222500 Glycine max HOM05D003118 ORTHO05D003618 1.9e-51 208.0 574 34.5
CiPaw.11G129400 Carya illinoinensis HOM05D003118 ORTHO05D003618 4.2e-51 206.8 264 54.2
VMungo1215G2430 Vigna mungo HOM05D003118 ORTHO05D003618 2.7e-50 204.1 562 33.6
Phvul.002G160400 Phaseolus vulgaris HOM05D003118 ORTHO05D003618 6.1e-50 203.0 555 34.8
Nitab4.5_0005339g0020 Nicotiana tabacum HOM05D003118 ORTHO05D003618 1.0e-49 202.2 566 35.7
Psat2g183920 Pisum sativum HOM05D003118 ORTHO05D003618 1.4e-49 201.8 548 33.9
Eucgr.E00782 Eucalyptus grandis HOM05D003118 ORTHO05D003618 3.9e-49 200.3 518 36.1
LjContig00312_ERROPOS870357g0002156 Lotus japonicus HOM05D003118 ORTHO05D003618 1.1e-48 198.7 525 34.5
arahy.Tifrunner.gnm1.ann1.78DXCF Arachis hypogaea HOM05D003118 ORTHO05D003618 2.8e-47 194.1 541 33.8
Peaxi162Scf00102g01644 Petunia axillaris HOM05D003118 ORTHO05D003618 2.8e-47 194.1 563 34.5
PGR042G1679 Punica granatum HOM05D003118 ORTHO05D003618 3.7e-47 193.7 554 34.5
MSTRG.13862 Avicennia marina HOM05D003118 ORTHO05D003618 7.0e-46 189.5 564 35.3
Solyc08g008130.4 Solanum lycopersicum HOM05D003118 ORTHO05D003618 1.2e-45 188.7 556 33.6
Medtr5g009920 Medicago truncatula HOM05D003118 ORTHO05D003618 5.9e-45 186.4 545 32.5
Sc01g0009900 Simmondsia chinensis HOM05D003118 ORTHO05D003618 1.7e-44 184.9 529 34.8
Sopen08g003990 Solanum pennellii HOM05D003118 ORTHO05D003618 5.0e-44 183.3 556 33.8
arahy.Tifrunner.gnm1.ann1.9S2WM4 Arachis hypogaea HOM05D003118 ORTHO05D003618 1.0e-41 175.6 540 32.2
Nitab4.5_0002231g0040 Nicotiana tabacum HOM05D003118 ORTHO05D003618 9.7e-40 169.1 558 33.3
TPR.G6616 Trifolium pratense HOM05D003118 ORTHO05D003618 9.7e-40 169.1 529 31.6
Ah.12g052020 Amaranthus hybridus HOM05D003118 ORTHO05D003618 1.7e-39 168.3 556 34.7
CANSAT21G1093 Cannabis sativa HOM05D003118 ORTHO05D003618 2.0e-37 161.4 561 33.0
EL10Ac5g12842 Beta vulgaris HOM05D003118 ORTHO05D003618 1.3e-36 158.7 556 31.8
AUR62010758 Chenopodium quinoa HOM05D003118 ORTHO05D003618 2.2e-36 157.9 568 32.6
Ah.12g051980 Amaranthus hybridus HOM05D003118 ORTHO05D003618 5.0e-36 156.8 553 32.2
DCAR_000636 Daucus carota HOM05D003118 ORTHO05D003618 5.0e-36 156.8 536 32.3
AUR62019759 Chenopodium quinoa HOM05D003118 ORTHO05D003618 6.5e-36 156.4 567 32.6
Hund14265 Selenicereus undatus HOM05D003118 ORTHO05D003618 6.5e-36 156.4 567 31.7
FAN20G1199 Fragaria x ananassa HOM05D000212 ORTHO05D003618 5.5e-35 153.3 534 32.4
Oeu040820.1 Olea europaea HOM05D003118 ORTHO05D003618 3.6e-34 150.6 457 35.2
Hund11431 Selenicereus undatus HOM05D003118 ORTHO05D003618 4.7e-34 150.2 598 29.1
PGSC0003DMG402005827 Solanum tuberosum HOM05D003118 ORTHO05D003618 6.1e-34 149.8 481 32.4
Haze_15568 Corylus avellana HOM05D003118 ORTHO05D003618 5.2e-33 146.7 552 31.7
Cfa003868 Carpinus fangiana HOM05D003118 ORTHO05D003618 3.4e-32 144.1 562 31.9
QL04p055623 Quercus lobata HOM05D003118 ORTHO05D003618 4.8e-31 140.2 639 29.0
PSO266G0031 Papaver somniferum HOM05D003118 ORTHO05D003618 5.4e-30 136.7 554 30.5
PSO384G4267 Papaver somniferum HOM05D003118 ORTHO05D003618 2.7e-29 134.4 576 30.4
SalBow8G1076 Salvia bowleyana HOM05D003118 ORTHO05D003618 2.3e-28 131.3 540 29.3
PSO266G0003 Papaver somniferum HOM05D003118 ORTHO05D003618 9.5e-27 125.9 556 29.3
Migut.E01210 Erythranthe guttata HOM05D003118 ORTHO05D003618 4.4e-24 117.1 550 28.5
SHI07074 Sapria himalayana HOM05D003118 ORTHO05D003618 5.7e-24 116.7 543 28.4
PSO384G4225 Papaver somniferum HOM05D003118 ORTHO05D003618 8.3e-23 112.8 551 29.6
Oeu042365.1 Olea europaea HOM05D003118 ORTHO05D003618 1.9e-19 101.7 408 30.4
GSVIVG01019423001 Vitis vinifera HOM05D003118 ORTHO05D003618 2.1e-18 98.2 91 58.2
CANSAT21G0202 Cannabis sativa HOM05D003118 ORTHO05D003618 3.6e-18 97.4 380 28.9
Lsat_1_v5_gn_3_11501 Lactuca sativa HOM05D003118 ORTHO05D003618 3.1e-17 94.4 547 27.4
PSO063G6388 Papaver somniferum HOM05D003118 ORTHO05D003618 1.2e-16 92.4 542 28.4
PSO170G3062 Papaver somniferum HOM05D003118 ORTHO05D003618 1.5e-16 92.0 543 27.8
SGA_v2.0_scaffold173G39132 Striga asiatica HOM05D003118 ORTHO05D003618 1.7e-15 88.6 273 34.1
CDE10G1109 Ceratophyllum demersum HOM05D003118 ORTHO05D003618 6.4e-15 86.7 574 26.3
HanXRQChr06g0166221 Helianthus annuus HOM05D003118 ORTHO05D003618 5.4e-14 83.6 546 24.2
HanXRQChr13g0416081 Helianthus annuus HOM05D003118 ORTHO05D003618 9.2e-14 82.8 560 25.2
GSVIVG01026971001 Vitis vinifera HOM05D003118 ORTHO05D003618 1.2e-13 82.4 540 27.6
HPP92_000528 Vanilla planifolia HOM05D003118 ORTHO05D003618 4.6e-13 80.5 560 26.8
THA.LOC104809363 Tarenaya hassleriana HOM05D003118 ORTHO05D003618 1.0e-12 79.3 567 26.6
SGA_v2.0_scaffold144G35901 Striga asiatica HOM05D003118 ORTHO05D003618 3.0e-12 77.8 520 26.7
THA.LOC104823601 Tarenaya hassleriana HOM05D003118 ORTHO05D003618 3.0e-12 77.8 560 25.4
ATR0721G124 Amborella trichopoda HOM05D003118 ORTHO05D003618 3.9e-12 77.4 678 25.1
Actinidia27618 Actinidia chinensis HOM05D003118 ORTHO05D003618 8.6e-12 76.3 91 46.2
PSO384G0103 Papaver somniferum HOM05D048025 ORTHO05D003618 1.1e-11 75.9 151 41.1
Cfa002220 Carpinus fangiana HOM05D003118 ORTHO05D003618 1.5e-11 75.5 124 41.9
Zm00001eb375680 Zea mays HOM05D003118 ORTHO05D003618 3.3e-11 74.3 540 25.6
Lsat_1_v5_gn_6_84940 Lactuca sativa HOM05D003118 ORTHO05D003618 5.6e-11 73.6 540 25.9
Psat7g004040 Pisum sativum HOM05D003118 ORTHO05D003618 9.5e-11 72.8 207 36.2
ECA246G2781 Erigeron canadensis HOM05D003118 ORTHO05D003618 1.2e-10 72.4 544 25.0
Psat5g132840 Pisum sativum HOM05D003118 ORTHO05D003618 1.1e-09 69.3 96 46.9
Actinidia27617 Actinidia chinensis HOM05D003118 ORTHO05D003618 1.4e-09 68.9 115 41.7
Sp1g07530 Schrenkiella parvula HOM05D003118 ORTHO05D003618 1.8e-09 68.6 98 38.8
SEGI_20510 Sequoiadendron giganteum HOM05D003118 ORTHO05D003618 2.3e-09 68.2 569 25.8
Ah.12g052000 Amaranthus hybridus HOM05D003118 ORTHO05D003618 3.1e-09 67.8 137 39.4
Os06g0164000 Oryza sativa ssp. japonica HOM05D003118 ORTHO05D003618 3.1e-09 67.8 522 25.9
CARHR008810 Cardamine hirsuta HOM05D003118 ORTHO05D003618 4.0e-09 67.4 169 33.7
C08p12330 Brassica napus HOM05D003118 ORTHO05D003618 2.0e-08 65.1 117 36.8
BolC8t48874H Brassica oleracea HOM05D003118 ORTHO05D003618 2.0e-08 65.1 117 36.8
BraA08t35403Z Brassica rapa HOM05D003118 ORTHO05D003618 5.8e-08 63.5 117 36.8
PSO266G0025 Papaver somniferum HOM05D048025 ORTHO05D003828 7.5e-08 63.2 150 38.7
HanXRQChr17g0533861 Helianthus annuus HOM05D003118 ORTHO05D003618 2.9e-07 61.2 535 23.7
A08p34920 Brassica napus HOM05D003118 ORTHO05D003618 6.4e-07 60.1 117 35.0
BraA06t23787Z Brassica rapa HOM05D003118 ORTHO05D003618 1.9e-06 58.5 73 47.9
BcaB03g13535 Brassica carinata HOM05D003118 ORTHO05D003618 3.2e-06 57.8 111 35.1
A06p05760 Brassica napus HOM05D003118 ORTHO05D003618 4.1e-06 57.4 75 46.7
AL1G19340 Arabidopsis lyrata HOM05D003118 ORTHO05D003618 7.0e-06 56.6 115 33.9
BraA09t41913Z Brassica rapa HOM05D003118 ORTHO05D003618 7.0e-06 56.6 88 37.5


User provided reference genes

Program Settings