Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 1.0e-79 300.1 157 100.0
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.8e-55 219.5 157 74.5
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 3.9e-55 218.4 157 73.9
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 4.1e-52 208.4 159 67.9
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 9.1e-52 207.2 157 70.1
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.0e-42 174.9 153 64.1
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.0e-42 174.9 153 64.1
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 6.5e-42 174.5 153 64.1
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 3.2e-41 172.2 153 63.4
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 3.2e-41 172.2 162 61.7
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 4.2e-41 171.8 170 60.0
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.8e-39 166.4 162 59.3
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.8e-39 166.4 140 62.1
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 5.2e-39 164.9 159 56.6
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 6.7e-39 164.5 169 57.4
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 7.4e-38 161.0 178 56.7
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 7.4e-38 161.0 164 56.7
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 4.8e-37 158.3 166 58.4
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 6.3e-37 157.9 162 57.4
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 8.2e-37 157.5 148 60.8
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.1e-36 157.1 154 57.8
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.1e-36 157.1 154 57.8
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 1.8e-36 156.4 162 56.2
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 9.1e-36 154.1 171 55.0
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 9.1e-36 154.1 171 55.0
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 9.1e-36 154.1 161 55.9
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 4.5e-35 151.8 158 58.2
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 1.3e-34 150.2 174 58.0
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.7e-34 149.8 159 51.6
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.2e-34 149.4 140 60.0
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.2e-34 149.4 140 60.0
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 2.2e-34 149.4 175 54.9
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 1.5e-33 146.7 150 60.7
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.5e-33 146.0 153 56.2
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 3.2e-33 145.6 160 55.0
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 4.2e-33 145.2 171 53.8
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 5.5e-33 144.8 166 53.6
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 5.5e-33 144.8 169 53.3
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 7.2e-33 144.4 147 58.5
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 9.4e-33 144.1 153 54.9
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.2e-32 143.7 185 51.9
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.1e-32 142.9 141 57.4
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.7e-32 142.5 185 48.6
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.7e-32 142.5 185 48.6
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.7e-32 142.5 178 48.9
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 6.1e-32 141.4 177 50.8
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 6.1e-32 141.4 174 51.1
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 8.0e-32 141.0 177 50.8
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 1.4e-31 140.2 164 54.9
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.4e-31 140.2 158 52.5
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 1.8e-31 139.8 189 49.2
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 1.8e-31 139.8 189 49.2
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 3.0e-31 139.0 169 51.5
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 3.0e-31 139.0 141 56.7
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 4.0e-31 138.7 154 53.2
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 4.0e-31 138.7 181 50.3
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.0e-31 138.7 167 52.1
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 4.0e-31 138.7 166 53.6
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 5.2e-31 138.3 177 48.6
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 6.7e-31 137.9 180 48.3
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 6.7e-31 137.9 195 46.2
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 8.8e-31 137.5 147 56.5
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 2.0e-30 136.3 181 51.9
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 2.0e-30 136.3 173 49.7
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 2.6e-30 136.0 145 57.9
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 3.3e-30 135.6 181 49.7
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.4e-30 135.2 172 48.8
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 5.7e-30 134.8 153 55.6
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 5.7e-30 134.8 190 46.8
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 1.3e-29 133.7 169 48.5
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 2.2e-29 132.9 158 50.6
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 2.8e-29 132.5 168 53.0
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.1e-28 130.6 150 56.7
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.4e-28 130.2 166 53.6
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.4e-28 130.2 191 49.2
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 4.1e-28 128.6 164 46.3
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 4.1e-28 128.6 159 50.3
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 4.1e-28 128.6 162 47.5
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 4.1e-28 128.6 168 53.0
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 9.1e-28 127.5 151 51.0
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 9.1e-28 127.5 148 51.4
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 7.7e-27 124.4 192 44.3
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 1.0e-26 124.0 176 48.3
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.7e-26 123.2 182 46.7
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 8.5e-26 120.9 164 49.4
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 8.5e-26 120.9 160 49.4
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.9e-25 119.8 149 49.0
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 2.5e-25 119.4 179 46.4
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 2.5e-25 119.4 178 47.2
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 2.5e-25 119.4 182 46.7
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.2e-25 119.0 163 50.3
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 5.5e-25 118.2 131 55.7
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 7.2e-25 117.9 165 45.5
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 2.1e-24 116.3 143 50.3
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 2.1e-24 116.3 148 49.3
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 2.7e-24 115.9 157 49.7
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 3.6e-24 115.5 167 48.5
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 3.6e-24 115.5 156 48.7
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 6.1e-24 114.8 162 46.3
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 1.0e-23 114.0 170 46.5
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.4e-23 113.6 166 46.4
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 2.3e-23 112.8 159 47.2
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 4.0e-23 112.1 172 45.3
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.6e-22 109.4 161 41.6
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 4.4e-22 108.6 151 45.7
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 1.7e-21 106.7 160 44.4
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 2.2e-21 106.3 160 46.2
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 3.7e-21 105.5 149 47.0
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 4.8e-21 105.1 157 45.9
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 6.3e-21 104.8 159 45.9
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 8.3e-21 104.4 160 43.8
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 8.3e-21 104.4 160 43.8
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.1e-20 104.0 90 63.3
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.1e-20 104.0 90 63.3
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.1e-20 104.0 90 63.3
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 1.1e-20 104.0 157 42.0
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.4e-20 103.6 176 44.3
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 4.1e-20 102.1 154 40.9
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.7e-19 99.4 165 45.5
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.7e-18 96.7 152 44.7
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.7e-18 96.7 152 45.4
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 6.5e-18 94.7 160 44.4
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 8.0e-16 87.8 162 42.0
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 4.0e-15 85.5 90 60.0
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 8.9e-15 84.3 91 54.9
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 8.9e-15 84.3 91 54.9
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.2e-14 84.0 162 39.5
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.6e-14 82.8 91 54.9
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.5e-14 81.3 122 49.2
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 7.5e-14 81.3 122 49.2
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 1.3e-13 80.5 78 52.6
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.2e-13 79.7 122 49.2
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.1e-12 77.4 81 54.3
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 4.1e-12 75.5 96 47.9
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 5.4e-12 75.1 166 36.1
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 7.8e-11 71.2 89 46.1
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 1.0e-10 70.9 89 46.1
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.9e-09 66.6 103 46.6
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 1.9e-09 66.6 149 36.9
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 3.3e-09 65.9 79 51.9
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 7.3e-09 64.7 149 36.2
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.2e-08 63.9 78 55.1
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 1.6e-08 63.5 124 37.1
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 1.6e-08 63.5 125 40.8
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 3.6e-08 62.4 151 37.1
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 6.1e-08 61.6 153 35.3
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 5.2e-07 58.5 122 38.5
AUR62019816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 3.4e-06 55.8 93 38.7
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 5.8e-06 55.1 36 63.9


User provided reference genes

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