Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p030777 Quercus lobata HOM05D007071 ORTHO05D008677 1.0e-50 203.0 95 100.0
QL07p025881 Quercus lobata HOM05D007071 ORTHO05D008677 6.3e-16 87.4 47 85.1
Manes.08G038400 Manihot esculenta HOM05D007071 ORTHO05D008677 3.5e-14 81.6 48 75.0
Rhsim03G0057500 Rhododendron simsii HOM05D007071 ORTHO05D008677 1.7e-13 79.3 45 80.0
Actinidia37784 Actinidia chinensis HOM05D007071 ORTHO05D008677 2.9e-13 78.6 47 78.7
Dinv25088 Davidia involucrata HOM05D007071 ORTHO05D008677 6.5e-13 77.4 47 78.7
Cpa.g.sc222.1 Carica papaya HOM05D007071 ORTHO05D008677 8.6e-13 77.0 47 76.6
vmacro07528 Vaccinium macrocarpon HOM05D007071 ORTHO05D008677 1.1e-12 76.6 47 74.5
Nn2g14444 Nelumbo nucifera HOM05D007071 ORTHO05D008677 1.5e-12 76.3 47 76.6
TAR633G1119 Trochodendron aralioides HOM05D007071 ORTHO05D008677 1.9e-12 75.9 47 74.5
Aqoxy2G00613 Aquilegia oxysepala HOM05D007071 ORTHO05D008677 9.5e-12 73.6 47 70.2
Eucgr.A02532 Eucalyptus grandis HOM05D007071 ORTHO05D008677 9.5e-12 73.6 41 80.5
PSO339G2219 Papaver somniferum HOM05D007071 ORTHO05D008677 1.2e-11 73.2 47 72.3
GSVIVG01022502001 Vitis vinifera HOM05D007071 ORTHO05D008677 1.2e-11 73.2 45 73.3
MBI11_g24568_MAGBIO Magnolia biondii HOM05D007071 ORTHO05D008677 2.1e-11 72.4 47 68.1
Sp6g36270 Schrenkiella parvula HOM05D007071 ORTHO05D008677 2.8e-11 72.0 45 68.9
CARHR206610 Cardamine hirsuta HOM05D007071 ORTHO05D008677 6.1e-11 70.9 47 63.8
Ciclev10012576m.g Citrus clementina HOM05D007071 ORTHO05D008677 8.0e-11 70.5 47 68.1
Phvul.001G199700 Phaseolus vulgaris HOM05D007071 ORTHO05D008677 1.0e-10 70.1 47 66.0
ECA248G1335 Erigeron canadensis HOM05D007071 ORTHO05D008677 1.4e-10 69.7 40 80.0
TWI77G0807 Tripterygium wilfordii HOM05D007071 ORTHO05D008677 1.4e-10 69.7 45 73.3
AL6G16680 Arabidopsis lyrata HOM05D007071 ORTHO05D008677 2.3e-10 68.9 45 66.7
AT5G06590 Arabidopsis thaliana HOM05D007071 ORTHO05D008677 2.3e-10 68.9 45 66.7
Lj1g0020560 Lotus japonicus HOM05D007071 ORTHO05D008677 2.3e-10 68.9 45 66.7
TPR.G14411 Trifolium pratense HOM05D007071 ORTHO05D008677 2.3e-10 68.9 46 67.4
Aa31sc291G40 Aethionema arabicum HOM05D007071 ORTHO05D008677 4.0e-10 68.2 45 64.4
Eucgr.C00285 Eucalyptus grandis HOM05D007071 ORTHO05D008677 4.0e-10 68.2 40 75.0
Glyma.19G203500 Glycine max HOM05D007071 ORTHO05D008677 5.2e-10 67.8 45 66.7
PGR004G1089 Punica granatum HOM05D007071 ORTHO05D008677 5.2e-10 67.8 45 68.9
CiPaw.09G025100 Carya illinoinensis HOM05D007071 ORTHO05D008677 6.8e-10 67.4 48 70.8
arahy.Tifrunner.gnm1.ann1.B8MRUG Arachis hypogaea HOM05D007071 ORTHO05D008677 8.8e-10 67.0 48 68.8
arahy.Tifrunner.gnm1.ann1.P13BQJ Arachis hypogaea HOM05D007071 ORTHO05D008677 8.8e-10 67.0 48 68.8
Cfa020101 Carpinus fangiana HOM05D007071 ORTHO05D008677 8.8e-10 67.0 47 72.3
Haze_20090 Corylus avellana HOM05D007071 ORTHO05D008677 8.8e-10 67.0 48 72.9
Duzib093G1750 Durio zibethinus HOM05D007071 ORTHO05D008677 8.8e-10 67.0 47 63.8
Thhalv10014151m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 8.8e-10 67.0 45 66.7
VMungo1383G1243 Vigna mungo HOM05D007071 ORTHO05D008677 1.2e-09 66.6 47 63.8
Carub.0006s0547 Capsella rubella HOM05D007071 ORTHO05D008677 1.5e-09 66.2 45 64.4
HanXRQChr11g0347671 Helianthus annuus HOM05D007071 ORTHO05D008677 2.0e-09 65.9 45 66.7
Lalb_Chr25g0287781 Lupinus albus HOM05D007071 ORTHO05D008677 2.0e-09 65.9 41 68.3
COL.COLO4_29462 Corchorus olitorius HOM05D007071 ORTHO05D008677 2.6e-09 65.5 47 63.8
FvH4_6g21190 Fragaria vesca HOM05D007071 ORTHO05D008677 4.4e-09 64.7 45 66.7
FAN14G3447 Fragaria x ananassa HOM05D007071 ORTHO05D008677 4.4e-09 64.7 45 66.7
Thecc.05G182200 Theobroma cacao HOM05D007071 ORTHO05D008677 4.4e-09 64.7 45 62.2
Lsat_1_v5_gn_1_56481 Lactuca sativa HOM05D000137 ORTHO05D000503 5.7e-09 64.3 45 64.4
THA.LOC104809942 Tarenaya hassleriana HOM05D007071 ORTHO05D008677 5.7e-09 64.3 45 57.8
Thhalv10014358m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 7.5e-09 63.9 45 64.4
C09p70180 Brassica napus HOM05D007071 ORTHO05D008677 9.8e-09 63.5 47 59.6
BolC9t59762H Brassica oleracea HOM05D007071 ORTHO05D008677 9.8e-09 63.5 47 59.6
A10p29800 Brassica napus HOM05D007071 ORTHO05D008677 1.3e-08 63.2 45 60.0
BraA10t45019Z Brassica rapa HOM05D007071 ORTHO05D008677 1.3e-08 63.2 45 60.0
Medtr7g107150 Medicago truncatula HOM05D007071 ORTHO05D008677 1.3e-08 63.2 45 71.1
RcHm_v2.0_Chr3g0477671 Rosa chinensis HOM05D007071 ORTHO05D008677 1.3e-08 63.2 45 64.4
Sabra16G0066300 Salix brachista HOM05D007071 ORTHO05D008677 1.7e-08 62.8 47 59.6
Atru.chr8.1251 Acer truncatum HOM05D007071 ORTHO05D008677 2.2e-08 62.4 47 61.7
CDE10G1223 Ceratophyllum demersum HOM05D007071 ORTHO05D008677 2.2e-08 62.4 45 62.2
Potri.016G064200 Populus trichocarpa HOM05D007071 ORTHO05D008677 3.7e-08 61.6 47 55.3
Sed0020351 Sechium edule HOM05D007071 ORTHO05D008677 3.7e-08 61.6 47 61.7
ClCG10G017880 Citrullus lanatus HOM05D007071 ORTHO05D008677 6.3e-08 60.8 46 63.0
Sc01g0005210 Simmondsia chinensis HOM05D007071 ORTHO05D008677 6.3e-08 60.8 46 65.2
DCAR_020676 Daucus carota HOM05D007071 ORTHO05D008677 8.3e-08 60.5 40 67.5
FAN09G1879 Fragaria x ananassa HOM05D007071 ORTHO05D008677 8.3e-08 60.5 45 62.2
Glyma.03G206000 Glycine max HOM05D007071 ORTHO05D008677 8.3e-08 60.5 47 59.6
CANSAT64G1821 Cannabis sativa HOM05D007071 ORTHO05D008677 1.1e-07 60.1 47 61.7
MELO3C009585.2 Cucumis melo HOM05D007071 ORTHO05D008677 1.1e-07 60.1 45 60.0
CsaV3_3G038410 Cucumis sativus L. HOM05D007071 ORTHO05D008677 1.1e-07 60.1 45 60.0
ATR0697G054 Amborella trichopoda HOM05D007071 ORTHO05D008677 2.4e-07 58.9 40 65.0
Gohir.A09G131600 Gossypium hirsutum HOM05D007071 ORTHO05D008677 2.4e-07 58.9 47 57.4
Gorai.006G146400 Gossypium raimondii HOM05D007071 ORTHO05D008677 2.4e-07 58.9 47 57.4
SEGI_27522 Sequoiadendron giganteum HOM05D007071 ORTHO05D008677 5.4e-07 57.8 52 51.9
Solyc01g056990.3 Solanum lycopersicum HOM05D007071 ORTHO05D008677 5.4e-07 57.8 38 68.4
Sopen01g021160 Solanum pennellii HOM05D007071 ORTHO05D008677 5.4e-07 57.8 38 68.4
PGSC0003DMG400031498 Solanum tuberosum HOM05D007071 ORTHO05D008677 5.4e-07 57.8 38 68.4
Prupe.7G088000 Prunus persica HOM05D007071 ORTHO05D008677 1.2e-06 56.6 46 60.9
Psat3g026600 Pisum sativum HOM05D007071 ORTHO05D008677 4.5e-06 54.7 44 59.1
EL10Ac5g11787 Beta vulgaris HOM05D007071 ORTHO05D008677 7.8e-06 53.9 59 49.2


User provided reference genes

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