Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 9.8e-77 290.0 145 100.0
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 1.7e-68 262.7 136 97.8
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 9.2e-67 256.9 145 88.3
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 6.2e-55 217.6 144 79.2
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 3.7e-31 138.7 143 60.1
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 8.1e-31 137.5 145 57.2
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 4.9e-28 128.3 136 58.8
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 1.4e-27 126.7 141 56.0
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 7.1e-27 124.4 141 55.3
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 7.1e-27 124.4 141 55.3
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 7.1e-27 124.4 136 58.1
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.0e-25 120.6 130 60.8
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 6.5e-20 101.3 130 50.0
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 1.9e-19 99.8 120 49.2
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 4.2e-19 98.6 130 48.5
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 7.1e-19 97.8 134 50.7
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.1e-19 97.8 119 51.3
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.1e-19 97.8 119 52.1
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.1e-19 97.8 119 52.1
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.1e-19 97.8 119 52.1
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 1.2e-18 97.1 138 47.1
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.2e-18 97.1 119 52.1
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 1.6e-18 96.7 124 52.4
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 2.7e-18 95.9 127 51.2
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 4.6e-18 95.1 131 48.9
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.8e-17 93.2 131 48.1
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 2.3e-17 92.8 129 42.6
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 3.9e-17 92.0 135 43.0
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 1.1e-16 90.5 119 51.3
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 1.9e-16 89.7 125 49.6
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.9e-16 89.7 127 50.4
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 1.9e-16 89.7 127 50.4
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 2.5e-16 89.4 119 51.3
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.3e-15 87.0 125 46.4
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.6e-15 86.7 127 48.8
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 2.2e-15 86.3 106 49.1
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 2.8e-15 85.9 108 48.1
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 2.8e-15 85.9 106 48.1
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 3.7e-15 85.5 115 47.0
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 4.8e-15 85.1 130 41.5
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 8.2e-15 84.3 128 43.0
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 8.2e-15 84.3 119 46.2
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.8e-14 83.2 127 45.7
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 5.3e-14 81.6 122 43.4
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 5.3e-14 81.6 112 44.6
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 9.0e-14 80.9 127 45.7
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 2.0e-13 79.7 112 45.5
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 3.4e-13 79.0 124 48.4
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.4e-13 79.0 131 45.8
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.4e-13 79.0 131 45.8
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.4e-13 79.0 124 48.4
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 3.4e-13 79.0 123 45.5
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 4.5e-13 78.6 113 43.4
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 5.9e-13 78.2 102 51.0
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 5.9e-13 78.2 66 59.1
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 5.9e-13 78.2 66 59.1
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 7.7e-13 77.8 124 46.8
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 1.0e-12 77.4 83 53.0
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 1.0e-12 77.4 108 43.5
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.7e-12 76.6 102 46.1
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.7e-12 76.6 116 44.8
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.8e-12 75.5 102 49.0
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.8e-12 75.5 131 45.8
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 3.8e-12 75.5 134 36.6
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 6.5e-12 74.7 135 36.3
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 8.5e-12 74.3 114 42.1
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 1.4e-11 73.6 127 38.6
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 1.9e-11 73.2 64 60.9
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 3.2e-11 72.4 76 53.9
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 1.0e-09 67.4 135 35.6
PGSC0003DMG400012146 Solanum tuberosum HOM05D011491 ORTHO05D009078 1.0e-09 67.4 149 34.9
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 1.4e-09 67.0 116 42.2
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 2.3e-09 66.2 119 40.3
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 2.3e-09 66.2 110 40.0
PGSC0003DMG400012147 Solanum tuberosum HOM05D011491 ORTHO05D009078 3.9e-09 65.5 146 34.2
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 3.9e-09 65.5 106 37.7
ECA240G1351 Erigeron canadensis HOM05D007727 ORTHO05D009078 5.1e-09 65.1 62 56.5
Psat2g185360 Pisum sativum HOM05D007727 ORTHO05D009078 5.1e-09 65.1 145 36.6
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 6.7e-09 64.7 130 35.4
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 8.8e-09 64.3 100 37.0
AUR62019842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 1.3e-07 60.5 125 36.0
Medtr8g099485 Medicago truncatula HOM05D007727 ORTHO05D009078 1.3e-07 60.5 126 36.5
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 1.3e-07 60.5 128 32.0
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 1.3e-07 60.5 119 35.3
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 1.7e-07 60.1 54 50.0
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 1.7e-07 60.1 66 47.0
AUR62010842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 2.2e-07 59.7 45 62.2
Nitab4.5_0002782g0020 Nicotiana tabacum HOM05D011491 ORTHO05D009078 2.8e-07 59.3 102 37.3
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 2.8e-07 59.3 58 48.3
Sopen08g030640 Solanum pennellii HOM05D011491 ORTHO05D009078 3.7e-07 58.9 46 56.5
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 6.3e-07 58.2 106 37.7
Nitab4.5_0002782g0050 Nicotiana tabacum HOM05D011491 ORTHO05D009078 1.1e-06 57.4 107 33.6
CAN.G1804.6 Capsicum annuum HOM05D011491 ORTHO05D009078 1.4e-06 57.0 124 32.3
MELO3C016295.2 Cucumis melo HOM05D007727 ORTHO05D009078 1.4e-06 57.0 105 36.2
MSTRG.25674 Avicennia marina HOM05D007727 ORTHO05D009078 1.8e-06 56.6 123 32.5
Thhalv10026259m.g Eutrema salsugineum HOM05D009622 ORTHO05D011757 1.8e-06 56.6 55 45.5
Peaxi162Scf00074g00092 Petunia axillaris HOM05D011491 ORTHO05D009078 1.8e-06 56.6 104 35.6
CAN.G1804.7 Capsicum annuum HOM05D011491 ORTHO05D009078 3.1e-06 55.8 124 32.3
BcaNung04083 Brassica carinata HOM05D009622 ORTHO05D011757 5.3e-06 55.1 48 45.8
BcaNung04240 Brassica carinata HOM05D009622 ORTHO05D011757 5.3e-06 55.1 48 45.8
C07p53170 Brassica napus HOM05D009622 ORTHO05D011757 5.3e-06 55.1 48 45.8
BolC7t45813H Brassica oleracea HOM05D009622 ORTHO05D011757 5.3e-06 55.1 48 45.8
BcaC09g50936 Brassica carinata HOM05D009622 ORTHO05D011757 6.9e-06 54.7 55 45.5
A01p15180 Brassica napus HOM05D009622 ORTHO05D011757 6.9e-06 54.7 55 45.5
C01p19110 Brassica napus HOM05D009622 ORTHO05D011757 6.9e-06 54.7 55 45.5
BolC1t01837H Brassica oleracea HOM05D009622 ORTHO05D011757 6.9e-06 54.7 55 45.5
BraA01t01456Z Brassica rapa HOM05D009622 ORTHO05D011757 6.9e-06 54.7 55 45.5
CARHR231260 Cardamine hirsuta HOM05D009622 ORTHO05D011757 9.1e-06 54.3 48 47.9


User provided reference genes

Program Settings