Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 7.0e-75 283.9 144 100.0
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 9.5e-56 220.3 144 79.2
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 1.4e-54 216.5 144 79.2
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 2.4e-51 205.7 135 80.0
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 3.6e-31 138.7 151 56.3
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 5.2e-30 134.8 153 54.2
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 7.6e-29 131.0 142 57.0
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 6.4e-28 127.9 148 56.1
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.4e-27 126.7 148 56.1
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 1.4e-27 126.7 148 56.1
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 7.1e-27 124.4 148 51.4
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 5.6e-24 114.8 130 58.5
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 3.2e-19 99.0 147 42.9
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.1e-19 97.8 118 52.5
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.1e-19 97.8 118 52.5
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.1e-19 97.8 118 52.5
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 2.7e-18 95.9 138 45.7
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 7.8e-18 94.4 118 49.2
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 1.7e-17 93.2 133 51.1
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 1.1e-16 90.5 139 46.0
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.5e-16 90.1 118 48.3
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 1.5e-16 90.1 118 48.3
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 3.3e-16 89.0 132 46.2
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 9.6e-16 87.4 104 51.9
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 9.6e-16 87.4 118 46.6
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 1.3e-15 87.0 118 49.2
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 1.6e-15 86.7 123 49.6
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.1e-15 86.3 130 42.3
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.1e-14 84.0 139 43.2
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 1.4e-14 83.6 125 45.6
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.8e-14 83.2 115 47.0
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 4.0e-14 82.0 114 45.6
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 4.0e-14 82.0 109 45.0
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 5.3e-14 81.6 125 44.8
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 6.9e-14 81.3 114 41.2
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 2.6e-13 79.3 142 41.5
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.6e-13 79.3 134 44.0
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 3.4e-13 79.0 117 45.3
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 4.5e-13 78.6 125 45.6
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 4.5e-13 78.6 131 45.0
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 4.5e-13 78.6 131 45.0
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 4.5e-13 78.6 111 45.0
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 5.8e-13 78.2 126 45.2
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 5.8e-13 78.2 66 62.1
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 5.8e-13 78.2 66 62.1
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 5.8e-13 78.2 106 49.1
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 9.9e-13 77.4 132 47.0
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 9.9e-13 77.4 128 46.1
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 9.9e-13 77.4 128 46.1
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.7e-12 76.6 101 48.5
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 1.7e-12 76.6 106 46.2
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.9e-12 75.9 127 44.1
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 6.4e-12 74.7 120 44.2
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 8.4e-12 74.3 110 42.7
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 8.4e-12 74.3 109 45.0
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 8.4e-12 74.3 123 39.8
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 8.4e-12 74.3 124 46.0
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 8.4e-12 74.3 124 46.0
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 8.4e-12 74.3 136 42.6
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 1.9e-11 73.2 107 44.9
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.9e-11 73.2 117 43.6
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 3.2e-11 72.4 122 43.4
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 7.1e-11 71.2 65 61.5
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 1.2e-10 70.5 76 51.3
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.2e-10 70.5 108 39.8
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.2e-10 70.5 105 40.0
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 3.5e-10 68.9 66 54.5
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 3.5e-10 68.9 108 41.7
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 4.6e-10 68.6 127 37.0
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 6.0e-10 68.2 101 48.5
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 7.9e-10 67.8 139 38.8
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 2.3e-09 66.2 106 43.4
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 2.3e-09 66.2 125 43.2
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 8.7e-09 64.3 118 39.0
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 1.5e-08 63.5 79 44.3
PGSC0003DMG400012146 Solanum tuberosum HOM05D011491 ORTHO05D009078 3.3e-08 62.4 167 31.7
PGSC0003DMG400012147 Solanum tuberosum HOM05D011491 ORTHO05D009078 4.3e-08 62.0 137 34.3
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 4.3e-08 62.0 109 39.4
Medtr8g099485 Medicago truncatula HOM05D007727 ORTHO05D009078 7.4e-08 61.2 97 38.1
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 9.6e-08 60.8 108 36.1
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 1.6e-07 60.1 71 43.7
ECA240G1351 Erigeron canadensis HOM05D007727 ORTHO05D009078 2.1e-07 59.7 72 47.2
Nitab4.5_0002782g0050 Nicotiana tabacum HOM05D011491 ORTHO05D009078 2.1e-07 59.7 106 37.7
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 2.8e-07 59.3 134 34.3
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 4.8e-07 58.5 107 40.2
Sopen08g030640 Solanum pennellii HOM05D011491 ORTHO05D009078 4.8e-07 58.5 54 51.9
Psat2g185360 Pisum sativum HOM05D007727 ORTHO05D009078 6.2e-07 58.2 113 36.3
MSTRG.25674 Avicennia marina HOM05D007727 ORTHO05D009078 1.1e-06 57.4 54 55.6
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 1.1e-06 57.4 105 37.1
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 1.1e-06 57.4 52 46.2
CAN.G1804.6 Capsicum annuum HOM05D011491 ORTHO05D009078 1.4e-06 57.0 120 35.8
AUR62010842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 1.8e-06 56.6 50 56.0
CAN.G1804.7 Capsicum annuum HOM05D011491 ORTHO05D009078 2.4e-06 56.2 120 36.7
Nitab4.5_0002782g0020 Nicotiana tabacum HOM05D011491 ORTHO05D009078 4.0e-06 55.5 102 39.2
MELO3C016295.2 Cucumis melo HOM05D007727 ORTHO05D009078 5.3e-06 55.1 111 36.0
TAR374G1217 Trochodendron aralioides HOM05D026466 ORTHO05D009078 6.9e-06 54.7 142 35.9
TAR374G1599 Trochodendron aralioides HOM05D026466 ORTHO05D009078 6.9e-06 54.7 130 37.7


User provided reference genes

Program Settings