Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.3e-134 483.0 242 100.0
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 3.0e-102 375.6 242 78.9
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.7e-97 359.8 241 75.9
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.2e-97 359.4 240 74.6
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 4.9e-97 358.2 248 75.0
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-96 357.1 250 72.4
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 6.0e-95 351.3 243 73.7
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 2.3e-94 349.4 243 72.0
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 3.3e-93 345.5 243 70.0
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 5.6e-93 344.7 243 71.2
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 5.6e-93 344.7 244 72.1
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.3e-93 344.4 244 72.1
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.6e-92 343.2 242 71.9
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 2.8e-92 342.4 239 72.4
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 6.2e-92 341.3 243 69.1
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 6.2e-92 341.3 218 79.4
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 6.2e-92 341.3 237 69.2
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.1e-91 340.5 244 70.1
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.8e-91 339.7 244 71.3
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.1e-91 339.0 244 70.1
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.0e-91 338.6 243 67.9
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.2e-91 338.2 243 67.9
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.9e-91 337.4 243 68.3
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 8.9e-91 337.4 243 69.5
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.9e-91 337.4 250 70.0
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.8e-90 334.7 254 69.3
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 5.8e-90 334.7 241 69.3
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 7.6e-90 334.3 244 68.9
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 2.2e-89 332.8 247 68.0
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 3.8e-89 332.0 256 67.2
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 8.4e-89 330.9 240 71.2
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 4.2e-88 328.6 249 65.9
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.6e-87 326.6 233 69.5
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.5e-87 325.5 239 68.2
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 6.0e-87 324.7 254 64.6
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.0e-86 323.9 241 67.2
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 2.3e-86 322.8 243 70.4
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 2.3e-86 322.8 243 70.4
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 2.3e-86 322.8 244 68.9
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 3.9e-86 322.0 242 66.9
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 3.9e-86 322.0 240 68.8
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 6.6e-86 321.2 245 67.8
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 6.6e-86 321.2 255 65.5
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 8.7e-86 320.9 254 63.8
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.5e-85 320.1 233 70.4
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.5e-85 319.3 243 66.7
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 3.3e-85 318.9 241 67.2
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 7.3e-85 317.8 249 64.7
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 7.3e-85 317.8 243 66.7
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 2.8e-84 315.8 241 66.8
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.1e-83 313.9 220 72.3
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 2.4e-83 312.8 236 68.2
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 9.0e-83 310.8 236 65.3
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.2e-82 310.5 210 71.0
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 2.0e-82 309.7 248 64.5
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 2.6e-82 309.3 240 65.4
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.4e-82 308.5 256 61.3
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 5.8e-82 308.1 237 66.2
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.8e-82 308.1 257 63.0
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.3e-81 307.0 252 64.3
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.7e-81 306.6 249 64.7
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 2.2e-81 306.2 246 64.6
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 8.4e-81 304.3 254 62.6
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 8.4e-81 304.3 252 63.5
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 8.4e-81 304.3 252 63.5
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 7.1e-80 301.2 238 67.2
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 9.3e-80 300.8 250 62.8
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.6e-79 300.1 242 63.2
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 3.5e-79 298.9 244 63.5
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 3.5e-79 298.9 244 63.5
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 3.5e-79 298.9 236 62.7
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 4.6e-79 298.5 186 77.4
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 6.0e-79 298.1 238 65.1
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 1.0e-78 297.4 238 65.5
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 1.7e-78 296.6 235 65.1
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 3.9e-78 295.4 241 61.4
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 3.9e-78 295.4 222 68.0
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 5.1e-78 295.0 183 78.7
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 5.1e-78 295.0 243 63.8
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 5.1e-78 295.0 269 60.6
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 6.6e-78 294.7 207 71.5
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.1e-77 293.9 238 62.2
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.9e-77 293.1 185 75.1
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.9e-77 293.1 243 62.1
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 4.3e-77 292.0 187 76.5
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 7.3e-77 291.2 238 62.6
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 2.1e-76 289.7 238 62.2
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 2.8e-76 289.3 237 62.4
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 3.6e-76 288.9 185 75.1
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.6e-76 288.9 186 76.3
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 4.8e-76 288.5 238 59.2
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 8.1e-76 287.7 243 63.4
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 1.1e-75 287.3 238 61.3
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.1e-75 287.3 240 58.3
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.8e-75 286.6 240 63.8
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.8e-75 286.6 237 63.3
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.4e-75 286.2 185 73.5
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 3.1e-75 285.8 269 56.9
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.1e-75 285.8 231 62.8
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 3.1e-75 285.8 238 62.2
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 4.0e-75 285.4 185 75.7
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.0e-75 285.4 263 60.1
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 9.0e-75 284.3 189 73.0
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.2e-74 283.9 238 64.3
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.2e-74 283.9 224 63.8
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 7.6e-74 281.2 193 71.0
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 2.9e-73 279.3 233 61.4
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 4.9e-73 278.5 240 60.4
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 4.9e-73 278.5 224 63.8
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 1.4e-72 276.9 235 57.4
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.9e-72 276.6 186 71.5
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 3.2e-72 275.8 187 71.1
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.1e-69 267.3 222 62.6
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.1e-69 267.3 233 57.1
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.9e-69 266.5 267 53.6
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 1.9e-69 266.5 185 70.8
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.5e-69 266.2 267 53.6
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 3.3e-69 265.8 267 53.9
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.3e-69 265.4 184 69.6
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 4.8e-68 261.9 220 62.3
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 8.1e-68 261.2 182 67.0
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.1e-67 260.8 186 70.4
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 4.0e-67 258.8 181 69.1
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 1.2e-66 257.3 235 57.4
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.0e-66 256.5 178 71.3
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 2.2e-65 253.1 184 65.2
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 8.4e-65 251.1 161 74.5
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 4.2e-64 248.8 324 46.3
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 7.1e-64 248.1 184 64.7
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.6e-63 246.9 184 64.1
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.6e-63 246.9 184 64.1
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 1.3e-62 243.8 188 65.4
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 3.9e-62 242.3 173 64.7
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 6.7e-62 241.5 173 68.2
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 1.9e-61 240.0 246 54.1
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.9e-61 240.0 197 64.5
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 3.7e-60 235.7 242 54.1
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 8.2e-60 234.6 162 67.9
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 9.0e-59 231.1 233 51.9
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 3.8e-57 225.7 223 57.0
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 3.8e-57 225.7 223 57.0
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 4.2e-56 222.2 228 53.9
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.1e-54 215.3 139 72.7
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.2e-52 209.9 137 73.7
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.8e-52 208.8 142 69.7
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.3e-52 208.4 126 77.0
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 8.2e-52 208.0 127 70.9
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 2.4e-51 206.5 168 62.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 9.7e-45 184.5 125 69.6
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 3.9e-38 162.5 159 50.9
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 4.7e-31 139.0 214 41.1
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-30 137.5 116 59.5
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 2.0e-21 107.1 76 68.4
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 1.7e-20 104.0 109 56.0
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.0e-18 97.1 169 37.9
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 7.7e-18 95.1 142 42.3
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 1.0e-17 94.7 67 68.7
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 4.7e-15 85.9 235 27.7
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 4.0e-14 82.8 48 70.8
QL09p009017 Quercus lobata HOM05D004225 ORTHO05D004728 1.3e-12 77.8 42 92.9


User provided reference genes

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