Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p030286 Quercus lobata HOM05D000576 ORTHO05D000368 2.3e-173 612.1 300 100.0
GSVIVG01017697001 Vitis vinifera HOM05D000576 ORTHO05D000368 1.1e-29 134.8 291 36.1
Ciclev10013373m.g Citrus clementina HOM05D000576 ORTHO05D000368 3.9e-27 126.3 282 33.0
TAR633G1517 Trochodendron aralioides HOM05D000576 ORTHO05D000368 9.6e-26 121.7 291 32.0
Rhsim02G0214100 Rhododendron simsii HOM05D000576 ORTHO05D000368 2.1e-25 120.6 287 33.8
Dinv11451 Davidia involucrata HOM05D000576 ORTHO05D000368 1.4e-24 117.9 290 33.1
Atru.chr4.3172 Acer truncatum HOM05D000576 ORTHO05D000368 1.2e-23 114.8 281 32.7
CSS0001211 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 4.4e-23 112.8 280 29.6
RcHm_v2.0_Chr2g0167551 Rosa chinensis HOM05D000576 ORTHO05D000368 9.9e-23 111.7 286 31.8
Atru.chr4.3173 Acer truncatum HOM05D000576 ORTHO05D000368 1.3e-22 111.3 279 32.6
Aqoxy5G04185 Aquilegia oxysepala HOM05D000015 ORTHO05D002445 1.3e-22 111.3 287 31.0
Rhsim13G0226200 Rhododendron simsii HOM05D000576 ORTHO05D000368 2.9e-22 110.2 290 31.0
TAR636G0024 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.4e-21 107.8 290 30.3
vmacro11253 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 1.9e-21 107.5 281 29.9
FvH4_6g48151 Fragaria vesca HOM05D000576 ORTHO05D000368 3.2e-21 106.7 280 32.5
CSS0016406 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 5.4e-21 105.9 280 29.3
TAR633G1895 Trochodendron aralioides HOM05D000576 ORTHO05D000368 7.1e-21 105.5 279 30.5
vmacro02127 Vaccinium macrocarpon HOM05D000003 ORTHO05D000004 1.6e-20 104.4 288 29.9
FvH4_6g47821 Fragaria vesca HOM05D000576 ORTHO05D000368 2.1e-20 104.0 289 32.2
TAR633G2603 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.1e-20 104.0 287 30.7
FAN14G3739 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.0e-19 101.7 287 31.7
TAR371G0526 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.0e-19 101.7 286 29.7
CSS0035647 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 2.3e-19 100.5 285 33.3
MBI06_g04290_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D000368 3.9e-19 99.8 281 30.2
Aqoxy1G01400 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 6.6e-19 99.0 293 31.4
TAR633G2125 Trochodendron aralioides HOM05D000576 ORTHO05D000368 6.6e-19 99.0 279 29.7
TAR636G3326 Trochodendron aralioides HOM05D000576 ORTHO05D000368 6.6e-19 99.0 287 31.7
RcHm_v2.0_Chr2g0167641 Rosa chinensis HOM05D000576 ORTHO05D000368 1.1e-18 98.2 283 30.7
Sabra17G0081300 Salix brachista HOM05D000576 ORTHO05D000368 1.1e-18 98.2 287 30.7
FAN05G2407 Fragaria x ananassa HOM05D000576 ORTHO05D000368 2.5e-18 97.1 278 31.7
RcHm_v2.0_Chr3g0476161 Rosa chinensis HOM05D000576 ORTHO05D000368 4.3e-18 96.3 292 33.9
RcHm_v2.0_Chr2g0166621 Rosa chinensis HOM05D000576 ORTHO05D000368 5.6e-18 95.9 290 30.7
RcHm_v2.0_Chr2g0168251 Rosa chinensis HOM05D000576 ORTHO05D000368 3.6e-17 93.2 288 29.9
CSS0005465 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 4.8e-17 92.8 280 28.9
TAR629G0101 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.1e-16 91.7 280 30.4
TAR496G0003 Trochodendron aralioides HOM05D000576 ORTHO05D000368 4.0e-16 89.7 291 28.2
FAN14G2737 Fragaria x ananassa HOM05D000385 ORTHO05D000269 5.3e-16 89.4 221 33.5
Manes.17G000300 Manihot esculenta HOM05D000576 ORTHO05D000368 3.4e-15 86.7 283 29.3
TAR629G2683 Trochodendron aralioides HOM05D000576 ORTHO05D000368 3.4e-15 86.7 285 27.4
Aqoxy5G04063 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 4.5e-15 86.3 286 29.0
Actinidia07081 Actinidia chinensis HOM05D000576 ORTHO05D000368 5.8e-15 85.9 292 29.1
Os11g0533800 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D000368 7.6e-15 85.5 279 29.0
COL.COLO4_23025 Corchorus olitorius HOM05D000576 ORTHO05D000368 9.9e-15 85.1 286 30.4
Lj5A97T93 Lonicera japonica HOM05D000576 ORTHO05D000368 9.9e-15 85.1 281 29.5
Aqoxy7G03624 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 1.7e-14 84.3 269 31.2
DCAR_026934 Daucus carota HOM05D000576 ORTHO05D000368 1.7e-14 84.3 288 29.9
DCAR_026937 Daucus carota HOM05D000576 ORTHO05D000368 2.2e-14 84.0 288 29.5
Dinv41631 Davidia involucrata HOM05D000576 ORTHO05D000368 2.2e-14 84.0 281 31.0
Aqoxy5G02891 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 2.9e-14 83.6 282 28.7
Potri.017G092301 Populus trichocarpa HOM05D008175 ORTHO05D000368 2.9e-14 83.6 286 27.3
Prupe.3G259800 Prunus persica HOM05D000576 ORTHO05D000368 2.9e-14 83.6 282 29.8
Aqoxy3G00472 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 1.1e-13 81.6 285 27.0
FAN05G4147 Fragaria x ananassa HOM05D008847 ORTHO05D000368 1.1e-13 81.6 289 28.4
FAN14G2376 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.9e-13 80.9 225 32.9
MBI16_g01187_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D000368 2.4e-13 80.5 236 31.4
Prupe.8G038200 Prunus persica HOM05D000576 ORTHO05D000368 2.4e-13 80.5 282 31.2
RcHm_v2.0_Chr5g0047501 Rosa chinensis HOM05D008847 ORTHO05D000368 4.2e-13 79.7 285 28.1
Lj7A319T20 Lonicera japonica HOM05D000576 ORTHO05D000368 5.4e-13 79.3 284 28.9
QL11p001174 Quercus lobata HOM05D000576 ORTHO05D000368 5.4e-13 79.3 291 30.9
COL.COLO4_23029 Corchorus olitorius HOM05D000576 ORTHO05D000368 7.1e-13 79.0 285 29.1
Actinidia20536 Actinidia chinensis HOM05D000576 ORTHO05D000368 9.3e-13 78.6 287 29.3
Lj7A334T37 Lonicera japonica HOM05D000576 ORTHO05D000368 1.2e-12 78.2 281 28.8
Thecc.08G187100 Theobroma cacao HOM05D000576 ORTHO05D000368 1.2e-12 78.2 293 29.7
Lj1P336T14 Lonicera japonica HOM05D015521 ORTHO05D000368 2.7e-12 77.0 223 30.5
Haze_05695 Corylus avellana HOM05D000576 ORTHO05D000368 4.6e-12 76.3 291 28.2
Dinv21743 Davidia involucrata HOM05D000576 ORTHO05D000368 7.9e-12 75.5 278 29.1
Lj8A85G34 Lonicera japonica HOM05D000576 ORTHO05D000368 1.3e-11 74.7 254 26.8
Os11g0532600 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D000368 1.3e-11 74.7 277 27.1
Prupe.7G247200 Prunus persica HOM05D000576 ORTHO05D000368 2.3e-11 73.9 290 28.6
TWI63G0411 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 3.0e-11 73.6 288 25.7
QL10p040220 Quercus lobata HOM05D000576 ORTHO05D000368 3.9e-11 73.2 284 27.1
FAN05G3797 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.1e-11 72.8 290 27.6
FAN09G3608 Fragaria x ananassa HOM05D000576 ORTHO05D000368 6.7e-11 72.4 291 27.8
FvH4_7g27481 Fragaria vesca HOM05D008847 ORTHO05D000368 1.1e-10 71.6 291 29.6
Dinv29497 Davidia involucrata HOM05D000576 ORTHO05D000368 1.5e-10 71.2 209 29.7
TPR.G6938 Trifolium pratense HOM05D009500 ORTHO05D000368 1.5e-10 71.2 305 25.6
Haze_05669 Corylus avellana HOM05D000576 ORTHO05D000368 2.5e-10 70.5 180 30.6
RhsimUnG0214200 Rhododendron simsii HOM05D000576 ORTHO05D000368 2.5e-10 70.5 289 27.0
Os06g0161300 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 3.3e-10 70.1 291 25.1
RcHm_v2.0_Chr2g0160741 Rosa chinensis HOM05D008065 ORTHO05D010197 1.6e-09 67.8 288 28.5
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.1e-09 67.4 257 27.6
TAR371G1249 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.1e-09 67.4 126 36.5
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 2.8e-09 67.0 186 32.8
TWI32G0666 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 2.8e-09 67.0 275 25.5
FvH4_6g44000 Fragaria vesca HOM05D008065 ORTHO05D010197 3.6e-09 66.6 286 28.7
Lj6P729T22 Lonicera japonica HOM05D000576 ORTHO05D000368 3.6e-09 66.6 287 27.2
AUR62019267 Chenopodium quinoa HOM05D000576 ORTHO05D000368 4.8e-09 66.2 291 24.7
Medtr1g021820 Medicago truncatula HOM05D000312 ORTHO05D000221 4.8e-09 66.2 233 28.3
TWI63G1337 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 6.2e-09 65.9 198 28.8
FAN06G5009 Fragaria x ananassa HOM05D000576 ORTHO05D000368 8.1e-09 65.5 293 29.0
CiPaw.10G088400 Carya illinoinensis HOM05D000576 ORTHO05D000368 1.1e-08 65.1 292 27.4
MD15G1165800 Malus domestica HOM05D000576 ORTHO05D000368 1.1e-08 65.1 172 30.8
TAR629G2777 Trochodendron aralioides HOM05D003087 ORTHO05D003312 1.1e-08 65.1 274 25.9
Medtr1g013580 Medicago truncatula HOM05D000312 ORTHO05D000221 1.8e-08 64.3 211 29.9
Os09g0325220 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.8e-08 64.3 231 29.0
MD05G1360100 Malus domestica HOM05D000576 ORTHO05D000368 3.1e-08 63.5 203 28.6
FAN14G0812 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.0e-08 63.2 312 26.0
RcHm_v2.0_Chr7g0184471 Rosa chinensis HOM05D000576 ORTHO05D000368 4.0e-08 63.2 295 29.8
Aqoxy6G01747 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 9.0e-08 62.0 197 30.5
MBI18_g07602_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D008290 9.0e-08 62.0 181 29.8
Aqoxy6G01742 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 1.2e-07 61.6 197 30.5
Peaxi162Scf00445g00020 Petunia axillaris HOM05D000312 ORTHO05D000221 1.5e-07 61.2 223 28.7
AUR62029974 Chenopodium quinoa HOM05D000576 ORTHO05D000368 3.4e-07 60.1 255 27.1
FvH4_6g50840 Fragaria vesca HOM05D000576 ORTHO05D000368 3.4e-07 60.1 132 33.3
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 3.4e-07 60.1 132 34.1
Peaxi162Scf00179g00628 Petunia axillaris HOM05D000312 ORTHO05D000221 3.4e-07 60.1 192 28.6
Os06g0204600 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 4.5e-07 59.7 176 27.8
FvH4_2g27100 Fragaria vesca HOM05D000312 ORTHO05D000221 5.8e-07 59.3 229 27.5
MD09G1063900 Malus domestica HOM05D000576 ORTHO05D000368 5.8e-07 59.3 170 30.0
Potri.016G106600 Populus trichocarpa HOM05D016710 ORTHO05D015329 5.8e-07 59.3 227 31.7
Rhsim07G0244200 Rhododendron simsii HOM05D000576 ORTHO05D000368 5.8e-07 59.3 282 29.4
RcHm_v2.0_Chr3g0476181 Rosa chinensis HOM05D000576 ORTHO05D000368 5.8e-07 59.3 136 39.0
Os09g0506700 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 7.6e-07 58.9 157 31.2
Medtr5g090500 Medicago truncatula HOM05D009500 ORTHO05D000368 9.9e-07 58.5 223 25.6
TWI63G0418 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 9.9e-07 58.5 291 25.4
Os05g0575400 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.3e-06 58.2 159 29.6
EL10Ac4g09581 Beta vulgaris HOM05D000576 ORTHO05D000368 1.7e-06 57.8 302 25.8
Migut.F00694 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.7e-06 57.8 279 28.3
Hund11521 Selenicereus undatus HOM05D000576 ORTHO05D000368 1.7e-06 57.8 197 31.0
TWI63G0496 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.7e-06 57.8 291 25.4
vmacro03182 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 1.7e-06 57.8 214 29.4
FvH4_6g43950 Fragaria vesca HOM05D008065 ORTHO05D010197 2.2e-06 57.4 292 24.0
QL10p004689 Quercus lobata HOM05D000576 ORTHO05D000368 2.2e-06 57.4 291 25.1
Nitab4.5_0012908g0020 Nicotiana tabacum HOM05D000312 ORTHO05D000221 2.9e-06 57.0 230 27.0
Os06g0139000 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 2.9e-06 57.0 174 28.7
PGSC0003DMG400013766 Solanum tuberosum HOM05D000312 ORTHO05D000221 2.9e-06 57.0 220 28.6
ECA233G5551 Erigeron canadensis HOM05D003242 ORTHO05D003593 3.8e-06 56.6 108 32.4
FAN06G1177 Fragaria x ananassa HOM05D000576 ORTHO05D000368 3.8e-06 56.6 136 29.4
Medtr2g047872 Medicago truncatula HOM05D000312 ORTHO05D000221 3.8e-06 56.6 293 25.3
QL10p004694 Quercus lobata HOM05D000576 ORTHO05D000368 4.9e-06 56.2 291 25.1
QL03p058059 Quercus lobata HOM05D000576 ORTHO05D000368 6.4e-06 55.8 229 26.2
TWI63G0561 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 6.4e-06 55.8 188 27.7
FAN02G4373 Fragaria x ananassa HOM05D008847 ORTHO05D000368 8.4e-06 55.5 211 28.0
FAN24G1808 Fragaria x ananassa HOM05D000312 ORTHO05D000221 8.4e-06 55.5 229 27.1
Medtr2g047848 Medicago truncatula HOM05D000312 ORTHO05D000221 8.4e-06 55.5 234 26.1


User provided reference genes

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