Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p030251 Quercus lobata HOM05D007126 ORTHO05D008974 0.0e+00 1148.3 597 100.0
CiPaw.11G120500 Carya illinoinensis HOM05D007126 ORTHO05D008974 3.6e-250 868.2 606 79.7
Haze_09075 Corylus avellana HOM05D007126 ORTHO05D008974 1.4e-249 866.3 633 76.0
Prupe.5G121000 Prunus persica HOM05D007126 ORTHO05D008974 1.2e-237 826.6 600 75.0
MD06G1108400 Malus domestica HOM05D007126 ORTHO05D008974 5.8e-232 807.7 603 73.0
GSVIVG01019542001 Vitis vinifera HOM05D007126 ORTHO05D008974 6.0e-229 797.7 601 72.2
Atru.chr9.1971 Acer truncatum HOM05D007126 ORTHO05D008974 2.5e-227 792.3 607 70.7
Atru.chr9.1985 Acer truncatum HOM05D007126 ORTHO05D008974 2.5e-227 792.3 607 70.7
CANSAT21G1075 Cannabis sativa HOM05D007126 ORTHO05D008974 1.3e-223 780.0 593 71.7
Manes.01G047820 Manihot esculenta HOM05D007126 ORTHO05D008974 2.2e-223 779.2 601 69.7
RcHm_v2.0_Chr7g0194681 Rosa chinensis HOM05D007126 ORTHO05D008974 3.7e-223 778.5 595 71.9
Thecc.03G299000 Theobroma cacao HOM05D007126 ORTHO05D008974 4.9e-223 778.1 613 69.2
Duzib205G0473 Durio zibethinus HOM05D007126 ORTHO05D008974 1.2e-221 773.5 610 69.7
Gorai.008G255000 Gossypium raimondii HOM05D007126 ORTHO05D008974 6.6e-220 767.7 606 69.1
Gohir.A12G236900 Gossypium hirsutum HOM05D007126 ORTHO05D008974 1.9e-219 766.1 606 68.8
Gohir.D12G238100 Gossypium hirsutum HOM05D007126 ORTHO05D008974 2.5e-219 765.8 606 69.0
Potri.003G140800 Populus trichocarpa HOM05D007126 ORTHO05D008974 3.3e-219 765.4 610 69.3
PGR031G2002 Punica granatum HOM05D007126 ORTHO05D008974 7.3e-219 764.2 598 69.1
Ciclev10019342m.g Citrus clementina HOM05D007126 ORTHO05D008974 3.6e-218 761.9 569 70.8
Potri.001G090800 Populus trichocarpa HOM05D007126 ORTHO05D008974 8.9e-217 757.3 612 69.1
Actinidia22167 Actinidia chinensis HOM05D007126 ORTHO05D008974 1.7e-215 753.1 614 68.1
Eucgr.D01749 Eucalyptus grandis HOM05D007126 ORTHO05D008974 1.4e-214 750.0 623 67.6
Sed0013130 Sechium edule HOM05D007126 ORTHO05D008974 7.1e-214 747.7 604 68.9
CSS0001738 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 1.6e-213 746.5 609 68.5
TWI15G1063 Tripterygium wilfordii HOM05D007126 ORTHO05D008974 3.9e-212 741.9 600 68.0
CsaV3_4G006650 Cucumis sativus L. HOM05D007126 ORTHO05D008974 5.1e-212 741.5 601 68.9
Lalb_Chr09g0332411 Lupinus albus HOM05D007126 ORTHO05D008974 2.8e-210 735.7 601 67.1
Lj4g0010714 Lotus japonicus HOM05D007126 ORTHO05D008974 8.1e-210 734.2 603 66.8
VMungo0251G2926 Vigna mungo HOM05D007126 ORTHO05D008974 7.6e-208 727.6 604 65.1
Glyma.08G023000 Glycine max HOM05D007126 ORTHO05D008974 9.9e-208 727.2 601 65.4
CSS0007498 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 1.7e-207 726.5 614 67.1
Hma1.2p1_0440F.1_g153370 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 1.7e-207 726.5 551 72.1
Medtr8g099525 Medicago truncatula HOM05D007126 ORTHO05D008974 1.1e-206 723.8 600 65.8
FvH4_5g04720 Fragaria vesca HOM05D007126 ORTHO05D008974 1.2e-205 720.3 549 71.6
PGSC0003DMG400004995 Solanum tuberosum HOM05D007126 ORTHO05D008974 5.1e-204 714.9 587 65.1
Nitab4.5_0000726g0050 Nicotiana tabacum HOM05D007126 ORTHO05D008974 8.7e-204 714.1 594 66.0
ECA246G3461 Erigeron canadensis HOM05D007126 ORTHO05D008974 5.6e-203 711.4 603 65.3
ClCG07G011560 Citrullus lanatus HOM05D007126 ORTHO05D008974 1.8e-201 706.4 610 65.6
BraA09t37117Z Brassica rapa HOM05D007126 ORTHO05D008974 3.1e-201 705.7 522 71.3
A09p14710 Brassica napus HOM05D007126 ORTHO05D008974 2.6e-200 702.6 526 70.7
BolC9t54678H Brassica oleracea HOM05D007126 ORTHO05D008974 2.6e-200 702.6 526 71.1
BcaB07g31464 Brassica carinata HOM05D007126 ORTHO05D008974 4.5e-200 701.8 527 70.6
Migut.A00631 Erythranthe guttata HOM05D007126 ORTHO05D008974 4.5e-200 701.8 541 68.4
CAN.G390.5 Capsicum annuum HOM05D007126 ORTHO05D008974 5.8e-200 701.4 601 65.1
HanXRQChr17g0534861 Helianthus annuus HOM05D007126 ORTHO05D008974 7.6e-200 701.0 607 62.9
Hund11386 Selenicereus undatus HOM05D007126 ORTHO05D008974 9.9e-200 700.7 614 62.4
Sc22g0004970 Simmondsia chinensis HOM05D007126 ORTHO05D008974 1.7e-199 699.9 617 62.9
THA.LOC104817626 Tarenaya hassleriana HOM05D007126 ORTHO05D008974 2.2e-199 699.5 521 69.7
BcaC04g22569 Brassica carinata HOM05D007126 ORTHO05D008974 4.9e-199 698.4 526 70.7
Sopen12g024410 Solanum pennellii HOM05D007126 ORTHO05D008974 1.1e-198 697.2 584 65.1
Solyc12g055940.3 Solanum lycopersicum HOM05D007126 ORTHO05D008974 3.2e-198 695.7 604 64.1
MBI06_g08479_MAGBIO Magnolia biondii HOM05D007126 ORTHO05D008974 1.6e-197 693.3 617 61.1
AL2G10420 Arabidopsis lyrata HOM05D007126 ORTHO05D008974 1.3e-196 690.3 522 69.2
AT1G64430 Arabidopsis thaliana HOM05D007126 ORTHO05D008974 2.3e-196 689.5 534 67.4
Sp2g00310 Schrenkiella parvula HOM05D007126 ORTHO05D008974 5.1e-196 688.3 526 69.4
TPR.G3456 Trifolium pratense HOM05D007126 ORTHO05D008974 5.1e-196 688.3 608 63.0
CARHR046500 Cardamine hirsuta HOM05D007126 ORTHO05D008974 6.7e-196 688.0 581 64.0
Aqoxy5G04057_Aqoxy5G04058 Aquilegia oxysepala HOM05D007126 ORTHO05D008974 2.5e-195 686.0 531 66.1
arahy.Tifrunner.gnm1.ann1.U3A0V6 Arachis hypogaea HOM05D007126 ORTHO05D008974 4.3e-195 685.3 606 63.7
Aa31LG2G1430 Aethionema arabicum HOM05D007126 ORTHO05D008974 7.4e-195 684.5 521 68.3
Thhalv10023389m.g Eutrema salsugineum HOM05D007126 ORTHO05D008974 1.6e-194 683.3 527 69.1
Cc08_g16150 Coffea canephora HOM05D007126 ORTHO05D008974 2.4e-193 679.5 586 64.0
Oeu009966.1 Olea europaea HOM05D007126 ORTHO05D008974 6.9e-193 677.9 582 64.1
PSO063G3961 Papaver somniferum HOM05D007126 ORTHO05D008974 6.9e-193 677.9 585 63.4
AUR62019847 Chenopodium quinoa HOM05D007126 ORTHO05D008974 1.5e-192 676.8 590 61.4
Sabra01G0067000 Salix brachista HOM05D007126 ORTHO05D008974 2.0e-192 676.4 466 76.2
Rhsim02G0244700 Rhododendron simsii HOM05D007126 ORTHO05D008974 2.2e-191 672.9 606 62.5
AUR62010848 Chenopodium quinoa HOM05D007126 ORTHO05D008974 1.1e-190 670.6 517 67.1
Lj2C166T10 Lonicera japonica HOM05D007126 ORTHO05D008974 1.5e-187 660.2 648 59.6
Nn1g08439 Nelumbo nucifera HOM05D007126 ORTHO05D008974 2.8e-186 656.0 614 60.4
C09p17800 Brassica napus HOM05D007126 ORTHO05D008974 6.9e-185 651.4 489 70.3
Nitab4.5_0004010g0090 Nicotiana tabacum HOM05D007126 ORTHO05D008974 1.0e-183 647.5 585 62.7
arahy.Tifrunner.gnm1.ann1.GEY0M8 Arachis hypogaea HOM05D007126 ORTHO05D008974 3.2e-182 642.5 615 61.1
DCAR_029908 Daucus carota HOM05D007126 ORTHO05D008974 5.5e-182 641.7 546 63.0
Lsat_1_v5_gn_3_10920 Lactuca sativa HOM05D007126 ORTHO05D008974 1.8e-180 636.7 604 60.1
MELO3C016299.2 Cucumis melo HOM05D007126 ORTHO05D008974 3.0e-180 636.0 550 65.1
Hma1.2p1_0440F.1_g153360 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 3.9e-180 635.6 684 56.0
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 7.2e-174 614.8 625 56.3
Cpa.g.sc79.28 Carica papaya HOM05D007126 ORTHO05D008974 5.7e-171 605.1 489 67.7
ATR0598G096 Amborella trichopoda HOM05D007126 ORTHO05D008974 2.8e-170 602.8 609 55.7
Peaxi162Scf00117g01130 Petunia axillaris HOM05D007126 ORTHO05D008974 1.5e-168 597.0 586 57.5
Psat7g210120 Pisum sativum HOM05D007126 ORTHO05D008974 2.9e-167 592.8 482 65.8
SalBow1G1535 Salvia bowleyana HOM05D007126 ORTHO05D008974 2.8e-162 576.2 607 56.8
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 3.8e-159 565.8 552 59.1
SGA_v2.0_scaffold305G47987 Striga asiatica HOM05D007126 ORTHO05D008974 8.5e-159 564.7 547 59.0
HPP92_007857 Vanilla planifolia HOM05D007126 ORTHO05D008974 2.5e-158 563.1 555 56.6
unitig_37.g12131 Utricularia gibba HOM05D007126 ORTHO05D008974 9.4e-158 561.2 549 57.4
vmacro11349 Vaccinium macrocarpon HOM05D007126 ORTHO05D008974 5.3e-145 518.8 662 49.5
TAR374G0215 Trochodendron aralioides HOM05D007126 ORTHO05D008974 3.0e-140 503.1 331 78.5
Phvul.002G298304 Phaseolus vulgaris HOM05D007126 ORTHO05D008974 1.2e-136 491.1 331 75.8
Mapoly0029s0043 Marchantia polymorpha HOM05D007126 ORTHO05D008974 1.1e-134 484.6 542 48.5
Pp3c15_17220 Physcomitrium patens HOM05D007126 ORTHO05D008974 4.7e-133 479.2 513 49.3
Zm00001eb028190 Zea mays HOM05D007126 ORTHO05D008974 9.8e-131 471.5 578 46.5
SMO367G1126 Selaginella moellendorffii HOM05D007126 ORTHO05D008974 1.6e-120 437.6 521 47.0
CDE08G1056 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 1.5e-118 431.0 434 53.9
CBR_g19104 Chara braunii HOM05D007126 ORTHO05D008974 3.8e-98 363.2 538 42.8
Carub.0002s0034 Capsella rubella HOM05D007126 ORTHO05D008974 2.1e-88 330.9 237 75.5
FAN18G3621 Fragaria x ananassa HOM05D007126 ORTHO05D008974 6.7e-79 299.3 260 66.5
FAN08G3578 Fragaria x ananassa HOM05D007126 ORTHO05D008974 2.2e-74 284.3 278 62.2
Dinv37525 Davidia involucrata HOM05D007126 ORTHO05D008974 3.3e-62 243.8 295 51.5
Carub.0002s0035 Capsella rubella HOM05D007126 ORTHO05D008974 1.2e-59 235.3 226 54.9
SEGI_23531 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 7.9e-56 222.6 199 54.8
Cre14.g611950 Chlamydomonas reinhardtii HOM05D007126 ORTHO05D008974 4.3e-54 216.9 526 32.5
SEGI_08908 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 8.2e-53 212.6 235 51.1
Os08g0332700 Oryza sativa ssp. japonica HOM05D007126 ORTHO05D008974 5.0e-50 203.4 182 57.1
Cfa021999 Carpinus fangiana HOM05D007126 ORTHO05D008974 3.2e-49 200.7 209 58.4
CDE08G0877 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 2.1e-48 198.0 158 68.4
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 3.0e-39 167.5 232 49.6
SEGI_34352 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 1.8e-28 131.7 120 60.0
Cpa.g.sc79.27 Carica papaya HOM05D007126 ORTHO05D008974 1.4e-23 115.5 76 85.5
FAN13G2101 Fragaria x ananassa HOM05D007126 ORTHO05D008974 1.1e-17 95.9 71 77.5
BcaC09g50327 Brassica carinata HOM05D017681 ORTHO05D019883 1.2e-06 59.3 136 30.9
BcaC04g20679 Brassica carinata HOM05D017681 ORTHO05D019883 2.6e-06 58.2 136 30.1


User provided reference genes

Program Settings