Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 2.2e-156 555.8 340 100.0
QL02p029860 Quercus lobata HOM05D002255 ORTHO05D002288 3.8e-71 272.7 155 87.1
QL02p029889 Quercus lobata HOM05D002255 ORTHO05D002288 8.8e-60 235.0 219 61.6
CiPaw.11G118700 Carya illinoinensis HOM05D002255 ORTHO05D002288 1.5e-51 207.6 155 69.0
CiPaw.12G081200 Carya illinoinensis HOM05D002255 ORTHO05D002288 4.1e-49 199.5 157 66.2
Haze_09094 Corylus avellana HOM05D002255 ORTHO05D002288 5.7e-43 179.1 163 59.5
Cfa011979 Carpinus fangiana HOM05D002255 ORTHO05D002288 2.4e-41 173.7 156 59.6
Thecc.03G301000 Theobroma cacao HOM05D002255 ORTHO05D002288 3.2e-38 163.3 155 52.9
Ciclev10023315m.g Citrus clementina HOM05D002255 ORTHO05D002288 4.2e-38 162.9 157 56.7
Potri.001G089000 Populus trichocarpa HOM05D002255 ORTHO05D002288 7.2e-38 162.2 157 52.9
Sabra01G0065200 Salix brachista HOM05D002255 ORTHO05D002288 3.0e-36 156.8 157 51.6
Atru.chr9.1928 Acer truncatum HOM05D002255 ORTHO05D002288 1.2e-35 154.8 170 49.4
QL02p029876 Quercus lobata HOM05D002255 ORTHO05D002288 2.6e-35 153.7 165 57.0
QL02p029867 Quercus lobata HOM05D002255 ORTHO05D002288 7.5e-35 152.1 242 43.8
Duzib205G1099 Durio zibethinus HOM05D002255 ORTHO05D002288 2.4e-33 147.1 155 50.3
Prupe.5G123000 Prunus persica HOM05D002255 ORTHO05D002288 3.1e-33 146.7 157 56.7
COL.COLO4_10731 Corchorus olitorius HOM05D002255 ORTHO05D002288 5.9e-32 142.5 157 48.4
RcHm_v2.0_Chr7g0194121 Rosa chinensis HOM05D002255 ORTHO05D002288 5.9e-32 142.5 165 53.9
FvH4_5g04950 Fragaria vesca HOM05D002255 ORTHO05D002288 1.5e-30 137.9 165 52.1
Ca_17465_v3 Cicer arietinum L. HOM05D002255 ORTHO05D002288 1.9e-30 137.5 161 50.9
Medtr8g099655 Medicago truncatula HOM05D002255 ORTHO05D002288 3.3e-30 136.7 156 47.4
Phvul.002G300100 Phaseolus vulgaris HOM05D002255 ORTHO05D002288 4.3e-30 136.3 214 37.9
FAN18G0019 Fragaria x ananassa HOM05D002255 ORTHO05D002288 1.2e-29 134.8 165 52.1
FAN13G3015 Fragaria x ananassa HOM05D002255 ORTHO05D002288 1.6e-29 134.4 165 51.5
FAN08G1358 Fragaria x ananassa HOM05D002255 ORTHO05D002288 4.7e-29 132.9 165 52.1
TPR.G3449 Trifolium pratense HOM05D002255 ORTHO05D002288 4.7e-29 132.9 155 45.2
VMungo0251G1524 Vigna mungo HOM05D002255 ORTHO05D002288 4.7e-29 132.9 215 37.2
Gohir.A09G189700 Gossypium hirsutum HOM05D002255 ORTHO05D002288 3.0e-28 130.2 157 44.6
Gorai.006G206900 Gossypium raimondii HOM05D002255 ORTHO05D002288 4.0e-28 129.8 157 43.9
Glyma.05G218300 Glycine max HOM05D002255 ORTHO05D002288 5.2e-28 129.4 155 43.2
Glyma.08G024400 Glycine max HOM05D002255 ORTHO05D002288 6.8e-28 129.0 155 44.5
Gohir.D09G184400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 2.0e-27 127.5 157 43.9
Lj4g0026828 Lotus japonicus HOM05D002255 ORTHO05D002288 9.8e-27 125.2 156 45.5
CANSAT21G1974 Cannabis sativa HOM05D002255 ORTHO05D002288 1.3e-26 124.8 169 43.8
Hma1.2p1_0359F.1_g135100 Hydrangea macrophylla HOM05D002255 ORTHO05D002288 2.9e-26 123.6 157 48.4
MD14G1131100 Malus domestica HOM05D002255 ORTHO05D002288 2.9e-26 123.6 200 43.0
MD06G1110100 Malus domestica HOM05D002255 ORTHO05D002288 2.4e-25 120.6 201 40.8
Nn1g00261 Nelumbo nucifera HOM05D002255 ORTHO05D002288 4.1e-25 119.8 157 44.6
Manes.02G008000 Manihot esculenta HOM05D002255 ORTHO05D002288 5.4e-25 119.4 158 44.3
Psat7g024880 Pisum sativum HOM05D002255 ORTHO05D002288 9.2e-25 118.6 157 45.2
Lj2P163T54 Lonicera japonica HOM05D002255 ORTHO05D002288 4.6e-24 116.3 137 51.1
CSS0048832 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 7.8e-24 115.5 158 45.6
Gohir.A02G099300 Gossypium hirsutum HOM05D002255 ORTHO05D002288 7.8e-24 115.5 158 42.4
Eucgr.E00885 Eucalyptus grandis HOM05D002255 ORTHO05D002288 3.0e-23 113.6 163 44.8
Gohir.D03G084400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 3.9e-23 113.2 158 41.8
Gorai.003G078200 Gossypium raimondii HOM05D002255 ORTHO05D002288 3.9e-23 113.2 158 41.8
Actinidia22177 Actinidia chinensis HOM05D002255 ORTHO05D002288 1.9e-22 110.9 156 46.2
PGR042G2287 Punica granatum HOM05D002255 ORTHO05D002288 1.9e-22 110.9 163 43.6
MBI06_g13416_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 4.3e-22 109.8 155 40.0
Lalb_Chr05g0224011 Lupinus albus HOM05D002255 ORTHO05D002288 5.6e-22 109.4 157 42.0
Nn3g18976 Nelumbo nucifera HOM05D002255 ORTHO05D002288 1.4e-20 104.8 200 39.0
FAN18G0680 Fragaria x ananassa HOM05D002255 ORTHO05D002288 1.8e-20 104.4 162 43.2
ATR0602G057 Amborella trichopoda HOM05D002255 ORTHO05D002288 5.2e-20 102.8 155 38.1
Sed0012868 Sechium edule HOM05D002255 ORTHO05D002288 8.9e-20 102.1 157 41.4
Cpa.g.sc634.4 Carica papaya HOM05D002255 ORTHO05D002288 1.2e-19 101.7 162 38.3
DCAR_006522 Daucus carota HOM05D002255 ORTHO05D002288 1.2e-19 101.7 217 37.3
ClCG07G011470 Citrullus lanatus HOM05D002255 ORTHO05D002288 7.5e-19 99.0 157 38.9
CSS0015495 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 9.8e-19 98.6 159 40.9
TWI60G0014 Tripterygium wilfordii HOM05D002255 ORTHO05D002288 2.2e-18 97.4 157 38.2
PSO384G0536 Papaver somniferum HOM05D002255 ORTHO05D002288 2.9e-18 97.1 167 37.7
Peaxi162Scf00102g01853 Petunia axillaris HOM05D002255 ORTHO05D002288 2.9e-18 97.1 190 35.3
AUR62019868 Chenopodium quinoa HOM05D002255 ORTHO05D002288 4.9e-18 96.3 164 35.4
HanXRQChr17g0534981 Helianthus annuus HOM05D002255 ORTHO05D002288 6.4e-18 95.9 135 45.2
Lsat_1_v5_gn_3_11301 Lactuca sativa HOM05D002255 ORTHO05D002288 1.1e-17 95.1 157 41.4
CsaV3_4G006750 Cucumis sativus L. HOM05D002255 ORTHO05D002288 1.9e-17 94.4 157 40.1
EL10Ac5g12942 Beta vulgaris HOM05D002255 ORTHO05D002288 2.4e-17 94.0 158 38.0
MELO3C016274.2 Cucumis melo HOM05D002255 ORTHO05D002288 7.0e-17 92.4 157 38.9
SEGI_25160 Sequoiadendron giganteum HOM05D002255 ORTHO05D002288 1.3e-15 88.2 161 36.6
Sopen08g004240 Solanum pennellii HOM05D002255 ORTHO05D002288 3.0e-15 87.0 191 31.4
PGSC0003DMG400005843 Solanum tuberosum HOM05D002255 ORTHO05D002288 3.9e-15 86.7 191 31.9
Solyc08g008360.2 Solanum lycopersicum HOM05D002255 ORTHO05D002288 8.6e-15 85.5 191 31.4
ECA246G0612 Erigeron canadensis HOM05D002255 ORTHO05D002288 1.5e-14 84.7 135 40.0
AUR62010866 Chenopodium quinoa HOM05D002255 ORTHO05D002288 2.5e-14 84.0 140 36.4
Sc01g0010380 Simmondsia chinensis HOM05D002255 ORTHO05D002288 7.3e-14 82.4 74 55.4
Aqoxy7G00071 Aquilegia oxysepala HOM05D002255 ORTHO05D002288 1.6e-13 81.3 91 45.1
Dinv37512 Davidia involucrata HOM05D002255 ORTHO05D002288 2.1e-13 80.9 78 53.8
FAN04G2345 Fragaria x ananassa HOM05D002255 ORTHO05D002288 2.1e-13 80.9 165 41.8
Nitab4.5_0002231g0100 Nicotiana tabacum HOM05D002255 ORTHO05D002288 2.3e-12 77.4 156 35.3
Nitab4.5_0007367g0010 Nicotiana tabacum HOM05D002255 ORTHO05D002288 3.1e-12 77.0 139 34.5
Ah.12g052770 Amaranthus hybridus HOM05D002255 ORTHO05D002288 4.0e-12 76.6 136 34.6
MBI12_g16192_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 1.2e-11 75.1 158 36.7
ATR0078G028 Amborella trichopoda HOM05D002255 ORTHO05D002288 1.5e-11 74.7 164 31.1
Ciclev10022281m.g Citrus clementina HOM05D002255 ORTHO05D002288 4.4e-11 73.2 160 34.4
Glyma.19G259600 Glycine max HOM05D002255 ORTHO05D002288 5.8e-11 72.8 167 31.7
SalBow5G5501 Salvia bowleyana HOM05D002255 ORTHO05D002288 9.8e-11 72.0 157 33.1
Cfa018310 Carpinus fangiana HOM05D002879 ORTHO05D002930 1.3e-10 71.6 111 62.2
Eucgr.E02058 Eucalyptus grandis HOM05D002879 ORTHO05D002930 3.7e-10 70.1 94 75.5
THA.LOC104813045 Tarenaya hassleriana HOM05D012458 ORTHO05D014337 3.7e-10 70.1 156 32.1
Nn1g00427 Nelumbo nucifera HOM05D002255 ORTHO05D002288 1.1e-09 68.6 159 35.2
Haze_17772 Corylus avellana HOM05D002879 ORTHO05D002930 1.4e-09 68.2 101 57.4
Haze_17773 Corylus avellana HOM05D002879 ORTHO05D002930 2.4e-09 67.4 105 51.4
Cfa011907 Carpinus fangiana HOM05D002255 ORTHO05D002288 3.2e-09 67.0 157 32.5
MBI04_g15572_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 3.2e-09 67.0 159 34.6
Glyma.03G260700 Glycine max HOM05D002255 ORTHO05D002288 5.4e-09 66.2 167 31.1
Eucgr.E01061 Eucalyptus grandis HOM05D002255 ORTHO05D002288 7.1e-09 65.9 166 31.9
PSO170G1572 Papaver somniferum HOM05D002255 ORTHO05D002288 7.1e-09 65.9 204 28.4
Peaxi162Scf00074g10019 Petunia axillaris HOM05D002255 ORTHO05D002288 7.1e-09 65.9 172 30.2
Nitab4.5_0001187g0090 Nicotiana tabacum HOM05D002879 ORTHO05D002930 9.2e-09 65.5 92 58.7
Psat6g195880 Pisum sativum HOM05D002255 ORTHO05D002288 1.2e-08 65.1 167 28.1
PGSC0003DMG400006662 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.2e-08 65.1 97 66.0
FvH4_2g13410 Fragaria vesca HOM05D002879 ORTHO05D002930 1.6e-08 64.7 94 71.3
Gohir.A09G188100 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.6e-08 64.7 159 28.9
Nitab4.5_0002764g0010 Nicotiana tabacum HOM05D002879 ORTHO05D002930 1.6e-08 64.7 92 58.7
PSO063G2959 Papaver somniferum HOM05D002255 ORTHO05D002288 1.6e-08 64.7 206 27.7
Solyc04g071600.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 1.6e-08 64.7 96 69.8
Actinidia22215 Actinidia chinensis HOM05D002255 ORTHO05D002288 2.1e-08 64.3 123 35.0
EL10Ac1g01576 Beta vulgaris HOM05D002879 ORTHO05D002930 2.1e-08 64.3 101 64.4
Solyc04g071610.4 Solanum lycopersicum HOM05D002879 ORTHO05D002930 2.1e-08 64.3 97 62.9
Sopen04g027590 Solanum pennellii HOM05D002879 ORTHO05D002930 2.1e-08 64.3 97 62.9
Atru.chr5.759 Acer truncatum HOM05D002255 ORTHO05D002288 2.7e-08 63.9 160 33.8
Nitab4.5_0003419g0080 Nicotiana tabacum HOM05D002255 ORTHO05D002288 2.7e-08 63.9 181 28.7
FAN24G2761 Fragaria x ananassa HOM05D002879 ORTHO05D002930 3.5e-08 63.5 94 80.9
Lalb_Chr03g0035371 Lupinus albus HOM05D002879 ORTHO05D002930 3.5e-08 63.5 89 57.3
Manes.01G240600 Manihot esculenta HOM05D002255 ORTHO05D002288 3.5e-08 63.5 160 31.9
QL02p029929 Quercus lobata HOM05D002879 ORTHO05D002930 3.5e-08 63.5 91 67.0
CSS0018027 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 4.6e-08 63.2 160 31.9
CiPaw.15G015000 Carya illinoinensis HOM05D002879 ORTHO05D002930 4.6e-08 63.2 100 75.0
arahy.Tifrunner.gnm1.ann1.4FY7U3 Arachis hypogaea HOM05D002879 ORTHO05D002930 6.0e-08 62.8 88 79.5
TAR625G0538 Trochodendron aralioides HOM05D002879 ORTHO05D002930 6.0e-08 62.8 89 46.1
Gohir.D09G182900 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.0e-07 62.0 159 28.9
Gorai.006G205200 Gossypium raimondii HOM05D002255 ORTHO05D002288 1.0e-07 62.0 159 28.9
AUR62026685 Chenopodium quinoa HOM05D002879 ORTHO05D002930 1.3e-07 61.6 94 68.1
Ah.05g168050 Amaranthus hybridus HOM05D002879 ORTHO05D002930 1.7e-07 61.2 89 68.5
Hma1.2p1_0240F.1_g100350 Hydrangea macrophylla HOM05D002879 ORTHO05D002930 1.7e-07 61.2 67 82.1
Sc01g0010790 Simmondsia chinensis HOM05D002255 ORTHO05D002288 1.7e-07 61.2 157 33.1
Ciclev10024010m.g Citrus clementina HOM05D002255 ORTHO05D002288 2.3e-07 60.8 159 28.3
Duzib116G0596 Durio zibethinus HOM05D002879 ORTHO05D002930 2.3e-07 60.8 92 57.6
Manes.12G116600 Manihot esculenta HOM05D002255 ORTHO05D002288 2.3e-07 60.8 156 31.4
Rhsim02G0246900 Rhododendron simsii HOM05D002255 ORTHO05D002288 2.3e-07 60.8 102 41.2
TPR.G7743 Trifolium pratense HOM05D002255 ORTHO05D002288 2.3e-07 60.8 168 28.0
Dinv41066 Davidia involucrata HOM05D002879 ORTHO05D002930 3.0e-07 60.5 88 67.0
Manes.05G017000 Manihot esculenta HOM05D002255 ORTHO05D002288 3.9e-07 60.1 157 31.2
Solyc04g071590.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 3.9e-07 60.1 97 62.9
Sopen04g027570 Solanum pennellii HOM05D002879 ORTHO05D002930 3.9e-07 60.1 87 67.8
arahy.Tifrunner.gnm1.ann1.HS8YG8 Arachis hypogaea HOM05D002879 ORTHO05D002930 5.1e-07 59.7 89 60.7
Nitab4.5_0000479g0060 Nicotiana tabacum HOM05D002255 ORTHO05D002288 5.1e-07 59.7 179 26.8
Peaxi162Scf00599g00115 Petunia axillaris HOM05D002879 ORTHO05D002930 5.1e-07 59.7 88 61.4
Potri.014G104900 Populus trichocarpa HOM05D002255 ORTHO05D002288 5.1e-07 59.7 161 32.3
AUR62040595 Chenopodium quinoa HOM05D002879 ORTHO05D002930 6.6e-07 59.3 96 64.6
MBI09_g23868_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 6.6e-07 59.3 89 69.7
arahy.Tifrunner.gnm1.ann1.HFKS8W Arachis hypogaea HOM05D002879 ORTHO05D002930 8.6e-07 58.9 92 78.3
arahy.Tifrunner.gnm1.ann1.MR10IA Arachis hypogaea HOM05D002879 ORTHO05D002930 8.6e-07 58.9 92 79.3
Nn3g18858 Nelumbo nucifera HOM05D002255 ORTHO05D002288 8.6e-07 58.9 161 32.9
Potri.002G178900 Populus trichocarpa HOM05D002255 ORTHO05D002288 1.1e-06 58.5 161 31.7
Prupe.8G034100 Prunus persica HOM05D002879 ORTHO05D002930 1.1e-06 58.5 92 73.9
Sed0000936 Sechium edule HOM05D002255 ORTHO05D002288 1.1e-06 58.5 161 29.8
Thecc.03G218700 Theobroma cacao HOM05D002255 ORTHO05D002288 1.1e-06 58.5 156 31.4
Glyma.10G224300 Glycine max HOM05D002879 ORTHO05D002930 1.5e-06 58.2 89 65.2
Lj2g0004069 Lotus japonicus HOM05D002879 ORTHO05D002930 1.9e-06 57.8 97 72.2
PGSC0003DMG400006663 Solanum tuberosum HOM05D002879 ORTHO05D002930 1.9e-06 57.8 54 59.3
CDE12G0944 Ceratophyllum demersum HOM05D002255 ORTHO05D002288 2.5e-06 57.4 156 29.5
FAN15G0525 Fragaria x ananassa HOM05D002879 ORTHO05D002930 2.5e-06 57.4 94 78.7
Sabra11G0146400 Salix brachista HOM05D002255 ORTHO05D002288 2.5e-06 57.4 162 28.4
Sabra14G0077300 Salix brachista HOM05D002255 ORTHO05D002288 2.5e-06 57.4 161 28.6
Sopen04g027580 Solanum pennellii HOM05D002879 ORTHO05D002930 3.3e-06 57.0 96 66.7
THA.LOC104809205 Tarenaya hassleriana HOM05D002879 ORTHO05D002930 3.3e-06 57.0 91 52.7
CAN.G264.2 Capsicum annuum HOM05D002879 ORTHO05D002930 4.3e-06 56.6 53 56.6
CiPaw.01G082000 Carya illinoinensis HOM05D002255 ORTHO05D002288 4.3e-06 56.6 160 31.9
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 4.3e-06 56.6 74 39.2
COL.COLO4_06208 Corchorus olitorius HOM05D002255 ORTHO05D002288 4.3e-06 56.6 149 30.2
Lsat_1_v5_gn_0_45861 Lactuca sativa HOM05D002255 ORTHO05D002288 4.3e-06 56.6 156 28.2
Lsat_1_v5_gn_3_14761 Lactuca sativa HOM05D002255 ORTHO05D002288 4.3e-06 56.6 156 28.2
Oeu010729.1 Olea europaea HOM05D002255 ORTHO05D002288 4.3e-06 56.6 170 29.4
Oeu022736.1 Olea europaea HOM05D002255 ORTHO05D002288 4.3e-06 56.6 161 31.1
Potri.011G153000 Populus trichocarpa HOM05D002255 ORTHO05D002288 4.3e-06 56.6 166 30.7
vmacro01469 Vaccinium macrocarpon HOM05D002879 ORTHO05D002930 4.3e-06 56.6 93 68.8
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.6e-06 56.2 83 37.3
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 5.6e-06 56.2 83 37.3
MBI09_g20569_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 5.6e-06 56.2 89 80.9
MBI09_g23867_MAGBIO Magnolia biondii HOM05D002879 ORTHO05D002930 5.6e-06 56.2 89 80.9
QL02p029925 Quercus lobata HOM05D002879 ORTHO05D002930 5.6e-06 56.2 63 76.2
Atru.chr13.2082 Acer truncatum HOM05D002879 ORTHO05D002930 7.3e-06 55.8 96 63.5
Actinidia04758 Actinidia chinensis HOM05D002879 ORTHO05D002930 7.3e-06 55.8 52 76.9
CAN.G264.3 Capsicum annuum HOM05D002879 ORTHO05D002930 7.3e-06 55.8 53 54.7
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.3e-06 55.8 83 36.1
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.3e-06 55.8 83 36.1
Peaxi162Scf00599g00009 Petunia axillaris HOM05D002879 ORTHO05D002930 7.3e-06 55.8 50 58.0
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 9.5e-06 55.5 74 39.2
Cpa.g.sc141.2 Carica papaya HOM05D002255 ORTHO05D002288 9.5e-06 55.5 160 30.6
COL.COLO4_29859 Corchorus olitorius HOM05D002879 ORTHO05D002930 9.5e-06 55.5 89 75.3
Duzib205G0269 Durio zibethinus HOM05D002255 ORTHO05D002288 9.5e-06 55.5 156 30.1
Solyc04g071580.3 Solanum lycopersicum HOM05D002879 ORTHO05D002930 9.5e-06 55.5 83 53.0


User provided reference genes

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