Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1493.0 731 100.0
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1397.1 733 93.3
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1390.9 733 92.6
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1373.6 748 90.8
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1346.6 733 88.1
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1343.9 732 87.7
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1337.8 733 88.4
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1337.4 733 87.6
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1335.1 730 87.1
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1333.9 730 87.0
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1333.9 730 87.0
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1333.5 731 86.9
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1332.8 743 86.8
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1332.4 730 87.8
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1332.4 731 88.2
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1332.0 731 87.0
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1331.6 731 86.9
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1327.4 730 87.5
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1327.0 733 86.9
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1327.0 732 87.4
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1327.0 731 87.8
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1326.6 733 87.4
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1325.8 733 87.4
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1325.8 730 86.4
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1325.8 733 86.9
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1324.7 731 87.3
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1323.9 732 87.3
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1322.8 733 87.7
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1321.6 732 87.0
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1318.5 730 86.8
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1318.5 733 87.2
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1317.8 731 87.4
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1317.8 731 87.4
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1316.2 733 86.9
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1313.9 731 86.0
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 731 86.3
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 733 86.9
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1312.4 733 85.9
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1311.6 731 86.7
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1311.2 733 86.1
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1309.3 732 85.8
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1308.5 730 86.2
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1308.5 731 87.0
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1307.7 731 85.1
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1307.7 730 86.2
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 731 86.7
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1305.8 734 84.6
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1305.0 732 86.1
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1305.0 731 86.0
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 776 82.6
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1300.8 732 85.1
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1300.4 735 84.6
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1298.9 731 85.9
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1298.9 731 85.8
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1298.9 732 85.8
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1297.7 730 85.5
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1296.6 730 85.2
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1295.4 732 84.7
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1292.7 731 85.4
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1291.9 730 84.8
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1291.2 731 85.2
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1290.4 724 86.0
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1289.2 730 84.5
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1287.7 732 84.7
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1286.6 775 81.3
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1284.6 723 85.2
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1283.1 730 84.8
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1281.9 730 84.0
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1279.6 731 84.7
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1278.5 732 84.3
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1278.5 780 80.3
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1278.5 780 80.3
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1275.8 731 83.2
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1275.8 732 83.9
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1275.0 829 77.1
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 732 84.3
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 782 79.9
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1273.5 703 86.2
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1271.5 731 83.4
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 731 82.6
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 731 83.0
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1262.7 731 82.8
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1262.7 731 82.9
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1261.5 731 83.0
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1261.1 731 82.8
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1261.1 731 82.6
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1259.6 731 82.5
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1259.2 731 82.5
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1258.8 731 82.6
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1256.5 731 82.8
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1254.6 733 84.0
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1254.2 731 82.6
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1253.0 729 82.0
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1252.3 731 82.2
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1234.2 733 81.4
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1230.3 698 83.1
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1223.8 748 79.5
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1220.7 733 79.3
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1217.6 731 81.8
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1217.2 732 81.7
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1214.1 742 79.9
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1213.4 743 79.8
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1212.6 743 79.8
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1206.0 663 86.7
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1203.7 733 79.7
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1202.6 734 79.6
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1199.5 659 87.6
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1198.7 720 79.4
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1198.0 666 86.6
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1190.3 730 79.9
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1175.6 731 77.7
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1173.3 740 75.9
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1157.9 705 78.2
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1154.8 616 90.1
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1131.7 705 77.0
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1131.3 734 74.5
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1129.4 616 88.5
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1096.6 731 74.4
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1092.0 585 89.6
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1088.2 734 71.8
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1079.3 703 74.8
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 2.1e-305 1052.0 750 71.6
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.5e-287 992.6 732 64.8
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 1.7e-286 989.2 725 65.7
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 1.2e-284 983.0 734 65.5
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.0e-283 979.9 701 70.0
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.2e-260 903.3 655 66.3
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.8e-259 899.4 690 62.2
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 4.0e-259 898.3 504 87.5
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 2.6e-258 895.6 567 77.4
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 2.8e-257 892.1 667 64.6
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 3.0e-246 855.5 696 59.5
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.2e-234 817.0 709 56.3
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 6.0e-231 804.7 783 53.5
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 1.2e-228 797.0 502 77.3
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 5.4e-216 755.0 417 86.3
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 9.9e-210 734.2 707 52.9
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.2e-186 657.5 422 75.1
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 3.3e-157 559.7 378 71.4
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 6.5e-153 545.4 303 88.4
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 4.8e-148 529.3 315 81.6
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.0e-145 521.5 356 72.2
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 5.5e-144 515.8 349 78.8
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 9.5e-144 515.0 311 82.0
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.7e-127 459.5 341 67.7
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.1e-114 417.5 292 70.9
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.8e-110 404.4 314 65.3
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 4.8e-95 353.2 183 85.8
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.1e-90 337.8 209 77.0
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 2.1e-87 327.8 429 47.8
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 4.6e-74 283.5 352 49.7
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 2.4e-70 271.2 220 63.6
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 6.5e-68 263.1 168 70.2
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 7.2e-67 259.6 212 60.8
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 4.3e-64 250.4 203 65.0
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.1e-46 192.6 219 43.8
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 4.1e-46 190.7 211 53.1
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-45 186.8 101 81.2
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 2.9e-44 184.5 206 52.9
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-43 182.6 101 81.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 8.8e-33 146.4 80 80.0
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-28 132.5 139 51.1
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 2.9e-28 131.3 161 49.7
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 2.0e-24 118.6 128 51.6
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.4e-22 112.5 128 44.5
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 9.2e-22 109.8 160 40.0
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.6e-21 109.0 160 40.0
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 1.6e-21 109.0 60 85.0
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 5.0e-20 104.0 130 50.8
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 1.6e-18 99.0 110 52.7
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 4.7e-18 97.4 111 48.6
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 8.9e-17 93.2 51 80.4
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 2.5e-11 75.1 73 52.1
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 3.3e-11 74.7 72 52.8
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 7.3e-11 73.6 50 74.0
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 3.4e-08 64.7 46 76.1
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 9.8e-08 63.2 40 70.0
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 1.7e-07 62.4 45 77.8
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 2.9e-07 61.6 34 85.3
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 3.7e-07 61.2 116 39.7
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 6.4e-07 60.5 44 75.0


User provided reference genes

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